BAC Information

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BAC

Clone NameB6Ng01-124M21
Chromosome9 (Build37)1 (Build37)
Map Location 5,944,390 - 5,944,498136,517,575 - 136,518,366
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG664889, Casp1, Casp4, Casp12, LOC547033, LOC100039361
Downstream geneLOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124M21.bB6Ng01-124M21.g
ACCDH927614DH927615
length734792
definitionDH927614|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M21, 5' end.DH927615|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,944,390 - 5,944,498)(136,517,575 - 136,518,366)
sequence
gaattcatgaaattcttagacaaatggatggatctggaggatatcatcct
gagcgaggtaacccaatcacaaaagaacacacatgatatgcactcactta
taagtggatattagcccagaaactcagaataccaaagatacaatttgtaa
aacacatgaaactcaagaagaaggaagaccaaagtgtagatactttgatc
cttcttagaagggggaacaaaatacccatggaaggagttacagagacaaa
gttctgagcagagactaaaggcatgactatccagagactgctccacctgg
ggatccatcccacaaacaaccacagaacctagatactattgcagatgcca
acaagagcttgctgacaggagcctgatatagctgtctcctgagaggctct
gccagtgcctgactaatacagaagtgtatgctcacagtcatccattagac
agagcacagggtcctcaatgaaggagctagagaaagtacccaaggagctg
atggggtttgcagccccctagaaggaacaacaatatgaactaaccagtag
ccccagagctcctggggactaaaccaccaatcaaagcacacggaaagact
catggctctagctgcatatgtagctgaggatggcctagttggtcatcaat
gggaggagaggcccttggtcctgtgaaggctctatgccccagtatagggg
aatgacagggccaggaagcgggagtgggtgggtt
gaattctacatattctctgttagaggtaagtttgcaatgagcttgtgtgc
aggaactttgatctctagtttgaatgagtttatagcaagcaaaagtgacc
tcattggatctaattgtgagtagtttttaagcaacctttgaatgttttct
ggcttcatttaggatatagttgagaacatttttttcattaggttttgtgt
atgtgtgtaagataagtctctctgttctcagggattcttgaattgtggca
gtcttctgccctgcctcttcagttcagggcttgcaggtgtgtgcacctcc
gcagctggctgtgtaacagtttctatttatgctcaaattagactccagtc
ctggctatgattcaccacctttgtttcatgtgtatggctggcttgcctgc
atgtatgtctgggtaccatttgtgttcagtgcccatggaatctaaagttt
gtcccttagaattggagtttgatagctgtgaaccttatgggtgctgggaa
ttggaatctggaagacagttgatgctcttaagcactgagccatctctagc
cctactgcccgcatttttagtaaacctgagatgtgacctcactgagtttt
cataaaaagcttaagagtatttttatattttttgtaagctgtccattatc
attggaatcagtatatccttttaaccgatttcattaaatctggaacaaaa
ggctatgtttttggagcctgcttttcctcctgtcactttttctcttgttt
aatcattggtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5944390_5944498
seq2: B6Ng01-124M21.b_671_779 (reverse)

seq1  AACCCACCCACTCCCACTTCCTGGCCCTGACATTGCCCTATACTGGGGCA  50
      ||||||||||||||| ||||||||||||| |||| |||||||||||||||
seq2  AACCCACCCACTCCCGCTTCCTGGCCCTGTCATTCCCCTATACTGGGGCA  50

seq1  TAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATTGATGACCAACTAG  100
      |||| ||||| || ||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACCAACTAG  100

seq1  GCCATCCTC  109
      |||||||||
seq2  GCCATCCTC  109

seq1: chr1_136517575_136518366
seq2: B6Ng01-124M21.g_70_861

seq1  GAATTCTACATATTCTCTGTTAGAGGTAAGTTTGCAATGAGCTTGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATATTCTCTGTTAGAGGTAAGTTTGCAATGAGCTTGTGTGC  50

seq1  AGGAACTTTGATCTCTAGTTTGAATGAGTTTATAGCAAGCAAAAGTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTTGATCTCTAGTTTGAATGAGTTTATAGCAAGCAAAAGTGACC  100

seq1  TCATTGGATCTAATTGTGAGTAGTTTTTAAGCAACCTTTGAATGTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGATCTAATTGTGAGTAGTTTTTAAGCAACCTTTGAATGTTTTCT  150

seq1  GGCTTCATTTAGGATATAGTTGAGAACATTTTTTTCATTAGGTTTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATTTAGGATATAGTTGAGAACATTTTTTTCATTAGGTTTTGTGT  200

seq1  ATGTGTGTAAGATAAGTCTCTCTGTTCTCAGGGATTCTTGAATTGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTAAGATAAGTCTCTCTGTTCTCAGGGATTCTTGAATTGTGGCA  250

seq1  GTCTTCTGCCCTGCCTCTTCAGTTCAGGGCTTGCAGGTGTGTGCACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGCCCTGCCTCTTCAGTTCAGGGCTTGCAGGTGTGTGCACCTCC  300

seq1  GCAGCTGGCTGTGTAACAGTTTCTATTTATGCTCAAATTAGACTCCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGCTGTGTAACAGTTTCTATTTATGCTCAAATTAGACTCCAGTC  350

seq1  CTGGCTATGATTCACCACCTTTGTTTCATGTGTATGGCTGGCTTGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATGATTCACCACCTTTGTTTCATGTGTATGGCTGGCTTGCCTGC  400

seq1  ATGTATGTCTGGGTACCATTTGTGTTCAGTGCCCATGGAATCTAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTCTGGGTACCATTTGTGTTCAGTGCCCATGGAATCTAAAGTTT  450

seq1  GTCCCTTAGAATTGGAGTTTGATAGCTGTGAACCTTATGGGTGCTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTAGAATTGGAGTTTGATAGCTGTGAACCTTATGGGTGCTGGGAA  500

seq1  TTGGAATCTGGAAGACAGTTGATGCTCTTAAGCACTGAGCCATCTCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCTGGAAGACAGTTGATGCTCTTAAGCACTGAGCCATCTCTAGC  550

seq1  CCTACTGCCCGCATTTTTAGTAAACCTGAGATGTGACCTCACTGAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCCCGCATTTTTAGTAAACCTGAGATGTGACCTCACTGAGTTTT  600

seq1  CATAAAAAGCTTAAGAGTATTTTTATATTTTTTGTAAGCTGTCCATTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAGCTTAAGAGTATTTTTATATTTTTTGTAAGCTGTCCATTATC  650

seq1  ATTGGAATCAGTATATCCTTTTAACCGATTTCATTAAATCTGGAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATCAGTATATCCTTTTAACCGATTTCATTAAATCTGGAACAAAA  700

seq1  GGCTATGTTTTTGGAGCCTGCTTTTCCTCCTGTCACTTTTTCTCTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTTTTTGGAGCCTGCTTTTCCTCCTGTCACTTTTTCTCTTGTTT  750

seq1  AATCATTGGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTTG  792
      |||||||||||||||||||||||||||||||||||||||| |
seq2  AATCATTGGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGG  792