BAC Information

Click to search

BAC

Clone NameB6Ng01-124N07
Chromosome9 (Build37)
Map Location 43,751,610 - 43,905,759
singlet/doubletdoublet
Overlap geneLOC100042548, Thy1, Usp2
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1
Downstream geneMfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124N07.bB6Ng01-124N07.g
ACCDH927634DH927635
length1,018871
definitionDH927634|Mus musculus domesticus DNA, BAC clone: B6Ng01-124N07, 5' end.DH927635|Mus musculus domesticus DNA, BAC clone: B6Ng01-124N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,904,735 - 43,905,759)(43,751,610 - 43,752,477)
sequence
gaattctgccaagagtcctgccaaatgctgtcaccaattcaaccagaatt
gtttcaaccagatggagcaagaactaggtgagatctgtcctgtctcaggc
atggccaggtggtgcggcctttgacaggtctcgaaccctcactgtcaata
agacagtagggatgaggcggcttctaaaggctcaagtctaaacattcaaa
aaatatgaattgggttacttaattctgaggctggaaagatagctagcacg
gtaccaaatccccagcacaaggtctgtccctgcatttttaattttatttt
ttatgtgcatcggtgttctgcctgcatgtctgtgtgagggtgtcagatct
tggagttacagagagttgtaaggtctatgtgggtactgggaattgaactc
aggacctcaggaagagcagtcagtgttgtaaaccattgagccatctctct
agctggtgcgattgctactgctttggtaagggaacttgctataaaaccca
tgacttgaatttcattcctgaaaatggaggaaagagagaattgactctca
aaagttccatatgtatgtatgtcatggtgtccacatgctgtcctagaata
aatgtagaaaaccaacaaaacaaactataaactgggccagggaagtatgg
gtgtgtaagtcccaattcaaatgtgtgtttggaggacgtgagcagagaga
gccctttggtttaaacgaggccttgaaggcctacccagagggagctcttg
ttcaaggtcaactgcaaaggcagcaccttctctcagtgagggcctgcagg
cctgcaggaacaccagctaagaacaggcggaataatccaagttgctagga
ggcgacagatcacaaagaatcgcctgcctgcgacagactgcttgtgtttt
ggggttggtgcagtgctagggaccgtttctatgggggatgagatgcgcca
cagctaggcaaaaaacggaagctgctacaaggccaaagctgattcagtcc
ctaattccttagtctgtc
gaattcaggttgccagacgtggccacaggacctttaccagatgagccaaa
atgactaatctttctgtgtataagctcttaaagggacctcattttcacgt
ctcctggccacctccatcctaccagctccaagagcagcatgtgcctgcat
aggcggctccctcctcaaatctctagcccctgcctctgcacactgcccct
cccatgcccgccttgtagcgggaatgtaattaggcctttcccaggatggc
aacccctcctcacagttgggctgcccgtccaaaggggataatttatggaa
atgggtaaaggtgttttaaattattcaatttaaatgtaaataggggagat
ggtttctctgaataaattgtcttatttatgttcctcccagctcccctccc
agggaaacagggagaagtttggagccctctggaacacaaggccctccctc
ctctttaaataatgtggaagcagggaatggtgtttggagacacaacaatg
tcctcaacaaccaatgtgccatttggaatcacagacatgcaagagttcgc
tgacacccagcctcaggaggactttggcctggtggaacaagagaacagga
agcctgtcccacccatctgggtgtccttgaagacagtgccctggggttga
catgccctgccatcctcctgttctactctggctctctttccagctgagtt
ccaagtgtttggtagccagcttaaaatttcccttgaatgtgtcttgtgct
ctgagacaataaagccatgggacacctactctttgagaatcttatccagc
cagatgctggggtctgcgaggaataaacttacttcaaaggaaggctcctc
tgtgtgtgtgtgtcgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43904735_43905759
seq2: B6Ng01-124N07.b_48_1065 (reverse)

seq1  GACAGACTAAGGAATTAGGGACTGGAGTCAAGCCTTTGCCCTTGCTAGCA  50
      ||||||||||||||||||||||| || |||   ||||| ||||| |||||
seq2  GACAGACTAAGGAATTAGGGACT-GAATCA--GCTTTGGCCTTG-TAGCA  46

seq1  GCTTTCCGTTCTCTGCCTAGCCTGTGGCGCCATCTCAT-CCCCATGGTAA  99
      || ||||||| | ||||||| |||||||| |||||||| |||||| | ||
seq2  GC-TTCCGTTTTTTGCCTAG-CTGTGGCG-CATCTCATCCCCCATAGAAA  93

seq1  CAGTCCCTAGCACTGCACCAAACCCCAAACACAAGCAGGTCTGTCGCAGG  149
      | ||||||||||||||||||| ||| ||||||||||| ||||||||||||
seq2  CGGTCCCTAGCACTGCACCAACCCCAAAACACAAGCA-GTCTGTCGCAGG  142

seq1  CAGGCGTTTCTTTGTGATCTGTCGCCTCCTAGCAACTTGGATTATTCCGC  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGATTCTTTGTGATCTGTCGCCTCCTAGCAACTTGGATTATTCCGC  192

seq1  CTGTTCTTAGCTGGTGTTCCTGCAGGCCTGCAGGCCCTCACTGAGAGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTAGCTGGTGTTCCTGCAGGCCTGCAGGCCCTCACTGAGAGAAG  242

seq1  GTGCTGCCTTTGCAGTTGACCTTGAACAAGAGCTCCCTCTGGGTAGGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCTTTGCAGTTGACCTTGAACAAGAGCTCCCTCTGGGTAGGCCT  292

seq1  TCAAGGCCTCGTTTAAACCAAAGGGCTCTCTCTGCTCACGTCCTCCAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCTCGTTTAAACCAAAGGGCTCTCTCTGCTCACGTCCTCCAAAC  342

seq1  ACACATTTGAATTGGGACTTACACACCCATACTTCCCTGGCCCAGTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTGAATTGGGACTTACACACCCATACTTCCCTGGCCCAGTTTAT  392

seq1  AGTTTGTTTTGTTGGTTTTCTACATTTATTCTAGGACAGCATGTGGACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTTGTTGGTTTTCTACATTTATTCTAGGACAGCATGTGGACAC  442

seq1  CATGACATACATACATATGGAACTTTTGAGAGTCAATTCTCTCTTTCCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATACATACATATGGAACTTTTGAGAGTCAATTCTCTCTTTCCTC  492

seq1  CATTTTCAGGAATGAAATTCAAGTCATGGGTTTTATAGCAAGTTCCCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGGAATGAAATTCAAGTCATGGGTTTTATAGCAAGTTCCCTTA  542

seq1  CCAAAGCAGTAGCAATCGCACCAGCTAGAGAGATGGCTCAATGGTTTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAGTAGCAATCGCACCAGCTAGAGAGATGGCTCAATGGTTTACA  592

seq1  ACACTGACTGCTCTTCCTGAGGTCCTGAGTTCAATTCCCAGTACCCACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACTGCTCTTCCTGAGGTCCTGAGTTCAATTCCCAGTACCCACAT  642

seq1  AGACCTTACAACTCTCTGTAACTCCAAGATCTGACACCCTCACACAGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTACAACTCTCTGTAACTCCAAGATCTGACACCCTCACACAGACA  692

seq1  TGCAGGCAGAACACCGATGCACATAAAAAATAAAATTAAAAATGCAGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGAACACCGATGCACATAAAAAATAAAATTAAAAATGCAGGGA  742

seq1  CAGACCTTGTGCTGGGGATTTGGTACCGTGCTAGCTATCTTTCCAGCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGTGCTGGGGATTTGGTACCGTGCTAGCTATCTTTCCAGCCTC  792

seq1  AGAATTAAGTAACCCAATTCATATTTTTTGAATGTTTAGACTTGAGCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAGTAACCCAATTCATATTTTTTGAATGTTTAGACTTGAGCCTT  842

seq1  TAGAAGCCGCCTCATCCCTACTGTCTTATTGACAGTGAGGGTTCGAGACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCGCCTCATCCCTACTGTCTTATTGACAGTGAGGGTTCGAGACC  892

seq1  TGTCAAAGGCCGCACCACCTGGCCATGCCTGAGACAGGACAGATCTCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGGCCGCACCACCTGGCCATGCCTGAGACAGGACAGATCTCACC  942

seq1  TAGTTCTTGCTCCATCTGGTTGAAACAATTCTGGTTGAATTGGTGACAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTGCTCCATCTGGTTGAAACAATTCTGGTTGAATTGGTGACAGC  992

seq1  ATTTGGCAGGACTCTTGGCAGAATTC  1025
      ||||||||||||||||||||||||||
seq2  ATTTGGCAGGACTCTTGGCAGAATTC  1018

seq1: chr9_43751610_43752477
seq2: B6Ng01-124N07.g_69_939

seq1  GAATTCAGGTTGCCAGACGTGGCCACAGGACCTTTACCAGATGAGCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGCCAGACGTGGCCACAGGACCTTTACCAGATGAGCCAAA  50

seq1  ATGACTAATCTTTCTGTGTATAAGCTCTTAAAGGGACCTCATTTTCACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAATCTTTCTGTGTATAAGCTCTTAAAGGGACCTCATTTTCACGT  100

seq1  CTCCTGGCCACCTCCATCCTACCAGCTCCAAGAGCAGCATGTGCCTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCACCTCCATCCTACCAGCTCCAAGAGCAGCATGTGCCTGCAT  150

seq1  AGGCGGCTCCCTCCTCAAATCTCTAGCCCCTGCCTCTGCACACTGCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGCTCCCTCCTCAAATCTCTAGCCCCTGCCTCTGCACACTGCCCCT  200

seq1  CCCATGCCCGCCTTGTAGCGGGAATGTAATTAGGCCTTTCCCAGGATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCCGCCTTGTAGCGGGAATGTAATTAGGCCTTTCCCAGGATGGC  250

seq1  AACCCCTCCTCACAGTTGGGCTGCCCGTCCAAAGGGGATAATTTATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCCTCACAGTTGGGCTGCCCGTCCAAAGGGGATAATTTATGGAA  300

seq1  ATGGGTAAAGGTGTTTTAAATTATTCAATTTAAATGTAAATAGGGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAAAGGTGTTTTAAATTATTCAATTTAAATGTAAATAGGGGAGAT  350

seq1  GGTTTCTCTGAATAAATTGTCTTATTTATGTTCCTCCCAGCTCCCCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGAATAAATTGTCTTATTTATGTTCCTCCCAGCTCCCCTCCC  400

seq1  AGGGAAACAGGGAGAAGTTTGGAGCCCTCTGGAACACAAGGCCCTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAGGGAGAAGTTTGGAGCCCTCTGGAACACAAGGCCCTCCCTC  450

seq1  CTCTTTAAATAATGTGGAAGCAGGGAATGGTGTTTGGAGACACAACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAATAATGTGGAAGCAGGGAATGGTGTTTGGAGACACAACAATG  500

seq1  TCCTCAACAACCAATGTGCCATTTGGAATCACAGACATGCAAGAGTTCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACAACCAATGTGCCATTTGGAATCACAGACATGCAAGAGTTCGC  550

seq1  TGACACCCAGCCTCAGGAGGACTTTGGCCTGGTGGAACAAGAGAACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCCAGCCTCAGGAGGACTTTGGCCTGGTGGAACAAGAGAACAGGA  600

seq1  AGCCTGTCCCACCCATCTGGGTGTCCTTGAAGACAGTGCCCTGGGG-TGA  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCTGTCCCACCCATCTGGGTGTCCTTGAAGACAGTGCCCTGGGGTTGA  650

seq1  CATGCCCTGCCATCCTCCTGTTCTACTCTGGCTCTCTTTCCAGCTGAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTGCCATCCTCCTGTTCTACTCTGGCTCTCTTTCCAGCTGAGTT  700

seq1  CCAAGTG-TTGGTAGCCAGCTTAAAACTTCCC-TGAATGTGTC-TGTGCT  746
      ||||||| |||||||||||||||||| ||||| |||||||||| ||||||
seq2  CCAAGTGTTTGGTAGCCAGCTTAAAATTTCCCTTGAATGTGTCTTGTGCT  750

seq1  CTGAGACAATAAAGCCATGGGACACCTACTCTTTGAGAATCCTTATCCAG  796
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGAGACAATAAAGCCATGGGACACCTACTCTTTGAGAAT-CTTATCCAG  799

seq1  CCAGATGCTGGGGTCTGCGAGGAATAGAACTTACTTCAAAGGAAGGCTCC  846
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGATGCTGGGGTCTGCGAGGAATA-AACTTACTTCAAAGGAAGGCTCC  848

seq1  TCTGTGTGTGTGTGT-GTGTGTG  868
      ||||||||||||||| |||||||
seq2  TCTGTGTGTGTGTGTCGTGTGTG  871