BAC Information

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BAC

Clone NameB6Ng01-124P07
Chromosome12 (Build37)9 (Build37)
Map Location 34,357,519 - 34,358,63096,718,221 - 96,718,695
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124P07.bB6Ng01-124P07.g
ACCDH927726DH927727
length1,106942
definitionDH927726|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P07, 5' end.DH927727|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,357,519 - 34,358,630)(96,718,221 - 96,718,695)
sequence
gaattcttatgcaatgttaaaagaaaaagtgcacttgctgtctcctaaga
gctaaggaactgggccatgggatgctgattcttaggataatcaaagggga
acctggagtaaacgactagattgacataaataaaagactgggcttatggt
ctgaaggagaagagctacccagagaaagattttagaatagcaagggagaa
ctgtctcaagcagaacacagagaaagaactgtctagagatttccagagaa
agcagatcagagaagagagaaagcagatcagagagagaaagaaagcagaa
tggagagaaagcaggctggaaatctgtctccagcagaacataggcaccag
cttgaacccgccatcgattttacttccagtcacttgttttccccactccc
aggcacctgatccttaaaagccctctccaagctgaggctgcttcttggca
atgaaccttaaggtgagcatcctcaggtgcgagcccctctgtgttggttg
ctcttaactctccattctttcttgtgtaaatcatgcaggtcttgtgcatt
ccaatttcgtgttctttaactctaagttttaagaagtgtaagtaaatcat
tggaaagaaagtaccgggaatgcagaatgattgggcacctcaagattaat
tttcttatattttatttctgcatctgtccctcagatcattgtgtttgtcc
tgagcattccctgtgctcagcctctctagtacatttattttcctagaaac
agctctgtcccattttgaacttggattttataggattggctaataatcaa
ttaaattacagtaacaatccaaagagaaagaagcaggttggaaacaaatg
tactgtctcctggaaagtaccagttcagccaggaaagtggactggatgca
cattagctttccagctgtgagccttctgcacgctctgggcattttaaggg
cagggaaagagttgctgactctgagaaggagtttaagcatagatttctta
gaaagcacatatagtgtttgggcactatgcctatagctttgcttttaaat
gtcagcagatagtgttgcaccatagaataaaaatagtgagctaacagcac
aactta
gaattcttctgtctaattgtatataatgaatcatcagacatttgtttctg
agtattgcttaaattggggagaatttgattgtaaaatctgatagaatcca
ttttagtcattaaatataatgtgcttatctttgaaataaaatcatttcta
tgtatcaagaaacacaaggtaaaaattagcaagactgctttgacacagga
gcttaggaactgaattcgatgtggttgtaacagttgacatcacttttcta
agggcaaaatgatgtccaaaaagccttcttggtctgtggtaggtctacat
gtattaatatatgctcaagattaaatcttaattacattaattaagttccg
atataaaatttctaaactaatgtgcttgattaaaaaaactttatagaaat
tttaataagttgactctcttgagtaatttttgtttattgcgttttctttt
ttttttaagtttttttttaattaagtatttagctcatttacatttccaat
gctataccaaaagtcccccatacccacccacccccactcccctacccgcc
cactccccctttttggccctggcgttcccctgttctggggcatataaagt
ttgtgtgtccaatgggcctctctttccagtgatggccgactaggccatct
tttgatacatatgcagctagagtcaagagctccggggtactggttagttc
ataatgttgatccacctatagggttgcagatccctttagctccttgggta
ctttctctagctcctccattgggagccctgtgatccatccattagctgac
tgtgagcatccacttctgtgttgctaggccccggcatagtctcacaagag
acagctacatctgggtcctttcgataaaatcttgctagtgtatgcaatgg
tgtcagcgtttggatgctgattatggggtggatccctggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34357519_34358630
seq2: B6Ng01-124P07.b_46_1151

seq1  GAATTCTTATGCAATGTTAAAAGAAAAAGTGCACTTGCTGTCTCCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGCAATGTTAAAAGAAAAAGTGCACTTGCTGTCTCCTAAGA  50

seq1  GCTAAGGAACTGGGCCATGGGATGCTGATTCTTAGGATAATCAAAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGAACTGGGCCATGGGATGCTGATTCTTAGGATAATCAAAGGGGA  100

seq1  ACCTGGAGTAAACGACTAGATTGACATAAATAAAAGACTGGGCTTATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGTAAACGACTAGATTGACATAAATAAAAGACTGGGCTTATGGT  150

seq1  CTGAAGGAGAAGAGCTACCCAGAGAAAGATTTTAGAATAGCAAGGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAGAAGAGCTACCCAGAGAAAGATTTTAGAATAGCAAGGGAGAA  200

seq1  CTGTCTCAAGCAGAACACAGAGAAAGAACTGTCTAGAGATTTCCAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAGCAGAACACAGAGAAAGAACTGTCTAGAGATTTCCAGAGAA  250

seq1  AGCAGATCAGAGAAGAGAGAAAGCAGATCAGAGAGAGAAAGAAAGCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCAGAGAAGAGAGAAAGCAGATCAGAGAGAGAAAGAAAGCAGAA  300

seq1  TGGAGAGAAAGCAGGCTGGAAATCTGTCTCCAGCAGAACATAGGCACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAAGCAGGCTGGAAATCTGTCTCCAGCAGAACATAGGCACCAG  350

seq1  CTTGAACCCGCCATCGATTTTACTTCCAGTCACTTGTTTTCCCCACTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCCGCCATCGATTTTACTTCCAGTCACTTGTTTTCCCCACTCCC  400

seq1  AGGCACCTGATCCTTAAAAGCCCTCTCCAAGCTGAGGCTGCTTCTTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCTGATCCTTAAAAGCCCTCTCCAAGCTGAGGCTGCTTCTTGGCA  450

seq1  ATGAACCTTAAGGTGAGCATCCTCAGGTGCGAGCCCCTCTGTGTTGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTTAAGGTGAGCATCCTCAGGTGCGAGCCCCTCTGTGTTGGTTG  500

seq1  CTCTTAACTCTCCATTCTTTCTTGTGTAAATCATGCAGGTCTTGTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTCTCCATTCTTTCTTGTGTAAATCATGCAGGTCTTGTGCATT  550

seq1  CCAATTTCGTGTTCTTTAACTCTAAGTTTTAAGAAGTGTAAGTAAATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCGTGTTCTTTAACTCTAAGTTTTAAGAAGTGTAAGTAAATCAT  600

seq1  TGGAAAGAAAGTACCGGGAATGCAGAATGATTGGGCACCTCAAGATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAAAGTACCGGGAATGCAGAATGATTGGGCACCTCAAGATTAAT  650

seq1  TTTCTTATATTTTATTTCTGCATCTGTCCCTCAGATCATTGTGTTTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATATTTTATTTCTGCATCTGTCCCTCAGATCATTGTGTTTGTCC  700

seq1  TGAGCATTCCCTGTGCTCAGCCTCTCTAGTACATTTATTTTCCTAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTCCCTGTGCTCAGCCTCTCTAGTACATTTATTTTCCTAGAAAC  750

seq1  AGCTCTGTCCCATTTTGAACTTGGATTTTATAGGATTGGCTAATAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTCCCATTTTGAACTTGGATTTTATAGGATTGGCTAATAATCAA  800

seq1  TTAAATTACAGTAACAATCCAAAGAGAAAGAAGCAGGTTGGAAACAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACAGTAACAATCCAAAGAGAAAGAAGCAGGTTGGAAACAAATG  850

seq1  TACTGTCTCCTGGAAAGTACCAGTTCAGCCAGGAAAGTGGACTGGATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTCCTGGAAAGTACCAGTTCAGCCAGGAAAGTGGACTGGATGCA  900

seq1  CATTAGCTTTCCAGCTGTGAGCCTTCTGCACGCTCTGGGCATTTTAAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTTCCAGCTGTGAGCCTTCTGCACGCTCTGGGCATTTTAAGGG  950

seq1  CAGGGAAAGAGTTGCTGACCCTGAGAAGGAGTTTAAGCATAGATTTCTTT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  CAGGGAAAGAGTTGCTGACTCTGAGAAGGAGTTTAAGCATAGATTTC-TT  999

seq1  AGAAAGCACATATAGTTGTTTGGGCACTATGCCTATAGCTTTGCTTTTTA  1050
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  AGAAAGCACATATAG-TGTTTGGGCACTATGCCTATAGCTTTGC-TTTTA  1047

seq1  AATGGTCAGCAAGATAGTGTTGCACCATAGAATAAAAATAGTTGAGCTAT  1100
      ||| |||||| |||||||||||||||||||||||||||||| ||||||| 
seq2  AAT-GTCAGC-AGATAGTGTTGCACCATAGAATAAAAATAG-TGAGCTA-  1093

seq1  ACAGCAC-ACTTA  1112
      ||||||| |||||
seq2  ACAGCACAACTTA  1106

seq1: chr9_96718221_96718695
seq2: B6Ng01-124P07.g_514_937 (reverse)

seq1  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGC-AACA  49

seq1  CAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  99

seq1  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTA  149

seq1  TAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCT  200
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  TAGGTGGATCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCT  199

seq1  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  249

seq1  GGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAG  300
      |||||||||||||| || ||||| | |||||| | |||||||||||||||
seq2  GGCCCATTGGACACACAAACTTTATATGCCCCAGAACAGGGGAACGCCAG  299

seq1  GGCCAAAGGGGGGAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAG  350
      |||||||  |||| |||||| ||||||||||||||||||||||||||| |
seq2  GGCCAAAAAGGGGGAGTGGGCGGGTAGGGGAGTGGGGGTGGGTGGGTATG  349

seq1  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATA  400
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACTTAAT-  398

seq1  AAAAATGGAAAAAAAAAATAAAAAAATAAAAGTAGTAAAAATTTTAAAAA  450
              ||||||||| | |||||| ||||| |                
seq2  -------TAAAAAAAAACTTAAAAAA-AAAAGAA----------------  424

seq1  AAAAAAAAAAAAAAAAAAAAAAGAA  475
                               
seq2  -------------------------  424