BAC Information

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BAC

Clone NameB6Ng01-125H11
Chromosome9 (Build37)
Map Location 110,140,149 - 110,264,946
singlet/doubletdoublet
Overlap geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap
Upstream geneFbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30
Downstream genePtpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H11.bB6Ng01-125H11.g
ACCDH928096DH928097
length1,1331,105
definitionDH928096|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H11, 5' end.DH928097|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,140,149 - 110,141,302)(110,263,815 - 110,264,946)
sequence
gaattcaaggctagtctggtctgcatagcaaattctagaccagactaggc
tacatggcaaaatcttgtcccaaaaaagggaaaaaaaatcctttctgtta
cttcccattaagtggactttcccaaccgtccccgtgtttccagcaatgac
gagttaccttgaatgtgtttgcagatcctcctccaccacagcagcagcag
ccgcctcctcctgcagatggggtccctccacctcctgctccaggcccacc
cgcctcggccactccctagcctggaagatacaagagcctccacagccacc
acaagcaggaatggggatggcaggacttgtgtctcggcttccttggtttt
cttgcaggatttttttttcacaaccccaagcacaagccccatgtctctcc
actccttgatacttcttgtgtcaggtccttagttgacactcattgggaag
cctgtggtgactgatgtgctctggtcatttaaaaagtaccatgtgtctcc
cctgtccccgtgtgacagatgttggcaggtggtctgcaggtcctgttgtg
ttgacattagtattctttgtgtgtatctctctctgtctctctctctctgc
tttgtctaaggcttcaatgtataatcctctataattattgtcctttcttc
ctttgtaatggttgtttttttaaggaaagtatcctaagttaatagaaacc
aaaaaaaaatggtaatgggcagaaagagatagccacagagggacacacct
taaggcattataagtgaccttatttctgcttatctgagctagagtggtgc
tactgatagagtccctgagacttgtcacacataagtgcaccaagatgaga
agagctggggaaagggggtatcctttcgatttgatttcctggtgaggacc
atgaaggacttccctgtgcctggagaaacatgccactgtacctagtacac
gatagatagcaaagagcacagctttacacaagccctttctaccttctccg
ccattctggtgtctgtgcagaagatttgcaagattggacatggtgttgtt
ttcccaagcagctgtagcttcaggttggggtttcctagttacaaagataa
ggtctgggcctactacaacttagaaccttccaa
gaattccacaggtcccgttccaggcaaggggagcttcagcagcgggtagc
tggggagaaggaaaaggagagaaagaataaggacatctgagaggcagagt
ctatgagatggtggtgacacgggagccactgcaattccaagtgcatcccc
actgccagaactgtgtaaaacccccatcttatttaccacagaatttcagc
actgaaattcagacatcatcgagatcagaattttcaaacagattttagcc
acaaaacctacaaagaagcccaactagtataacaggctggctgactgttt
tctaaggctttagacaagacgctaaacacaaagtcttatcaatcagacat
aggattaaaaaaaaaaaactaggggagaggatacaaattctggttccgac
agctgaggaactgctctatttaaagggacaaatcataagaattgtgaaag
acaccctgaggctggggatcactcagccatgctgagcacaggttaatggg
tccatcacacgtaaagaaactggcctcatgtcagcaagctatgaaataca
tgtgtattttattttgtttcatgtttcacttaattttttttaatattcag
aaataaactgtgtaagagggaggcaaactcgaggccttgtgaggtggtac
cctcaaaacaagacgacagacacagaggaagtgacttacatacagcatga
cacacacacatcggatgtacagctttcatccacgcataaccctatagcta
atcaccaccgagatcaagctacagaacgtgtccagaagctcaaaagacag
ccctggtcacagccatcaacacagacagtgctacggccgagtcattttgc
ttttcttttgtttttggtgctgagacgcgtacatctatctatgtgtacgt
tctaccatgtggcccacatccgtccatttgttattagtgtggggtgcact
ccagcacgtgtgaggtcagaggcagcttgcagaagcgttctttcatccct
agtactatgtggatcaggatgactggctgtcagctagcagcaatgctctt
accactgagcgtcttgtcagccagctttgcccatttttactaatataaaa
taaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110140149_110141302
seq2: B6Ng01-125H11.b_47_1179

seq1  GAATTCAAGGCTAGTCTGGTCTGCATAGCAAATTCTAGACCAGACTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGTCTGGTCTGCATAGCAAATTCTAGACCAGACTAGGC  50

seq1  TACATGGCAAAATCTTGTCCCAAAAAAGGGAAAAAAAATCCTTTCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCAAAATCTTGTCCCAAAAAAGGGAAAAAAAATCCTTTCTGTTA  100

seq1  CTTCCCATTAAGTGGACTTTCCCAACCGTCCCCGTGTTTCCAGCAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATTAAGTGGACTTTCCCAACCGTCCCCGTGTTTCCAGCAATGAC  150

seq1  GAGTTACCTTGAATGTGTTTGCAGATCCTCCTCCACCACAGCAGCAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACCTTGAATGTGTTTGCAGATCCTCCTCCACCACAGCAGCAGCAG  200

seq1  CCGCCTCCTCCTGCAGATGGGGTCCCTCCACCTCCTGCTCCAGGCCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCCTCCTGCAGATGGGGTCCCTCCACCTCCTGCTCCAGGCCCACC  250

seq1  CGCCTCGGCCACTCCCTAGCCTGGAAGATACAAGAGCCTCCACAGCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCGGCCACTCCCTAGCCTGGAAGATACAAGAGCCTCCACAGCCACC  300

seq1  ACAAGCAGGAATGGGGATGGCAGGACTTGTGTCTCGGCTTCCTTGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGGAATGGGGATGGCAGGACTTGTGTCTCGGCTTCCTTGGTTTT  350

seq1  CTTGCAGGATTTTTTTTTCACAACCCCAAGCACAAGCCCCATGTCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGATTTTTTTTTCACAACCCCAAGCACAAGCCCCATGTCTCTCC  400

seq1  ACTCCTTGATACTTCTTGTGTCAGGTCCTTAGTTGACACTCATTGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGATACTTCTTGTGTCAGGTCCTTAGTTGACACTCATTGGGAAG  450

seq1  CCTGTGGTGACTGATGTGCTCTGGTCATTTAAAAAGTACCATGTGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTGACTGATGTGCTCTGGTCATTTAAAAAGTACCATGTGTCTCC  500

seq1  CCTGTCCCCGTGTGACAGATGTTGGCAGGTGGTCTGCAGGTCCTGTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCCGTGTGACAGATGTTGGCAGGTGGTCTGCAGGTCCTGTTGTG  550

seq1  TTGACATTAGTATTCTTTGTGTGTATCTCTCTCTGTCTCTCTCTCTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTAGTATTCTTTGTGTGTATCTCTCTCTGTCTCTCTCTCTCTGC  600

seq1  TTTGTCTAAGGCTTCAATGTATAATCCTCTATAATTATTGTCCTTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAAGGCTTCAATGTATAATCCTCTATAATTATTGTCCTTTCTTC  650

seq1  CTTTGTAATGGTTGTTTTTTTAAGGAAAGTATCCTAAGTTAATAGAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAATGGTTGTTTTTTTAAGGAAAGTATCCTAAGTTAATAGAAACC  700

seq1  -AAAAAAAATGGTAATGGGCAGAAAGAGATAGCCACAGAGGGACACACCT  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATGGTAATGGGCAGAAAGAGATAGCCACAGAGGGACACACCT  750

seq1  TAAGGCATTATAAGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATTATAAGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGC  800

seq1  TACTGATAGAGTCCCTGAGACTTGTCACACATAAGTGCACCAAGATGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATAGAGTCCCTGAGACTTGTCACACATAAGTGCACCAAGATGAGA  850

seq1  AGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGAGGACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGAGGACC  900

seq1  ATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTACCTAGTACAC  949
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  ATGAAGGACTTCCCTGTGCCTGGAGAAACATGCCACTGTACCTAGTACAC  950

seq1  GATAGATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCC  999
      ||||||||||||||||||||||||||| |||||||||| ||||||||| |
seq2  GATAGATAGCAAAGAGCACAGCTTTAC-ACAAGCCCTTTCTACCTTCT-C  998

seq1  CGCCATTCTGGTTGTCTGTGCAGAAGATTTGCAGGATTGGAACATGGTGG  1049
      ||||||||||| ||||||||||||||||||||| |||||| ||||||| |
seq2  CGCCATTCTGG-TGTCTGTGCAGAAGATTTGCAAGATTGG-ACATGGT-G  1045

seq1  TTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGGGGTTTTCCCAGTC  1099
      ||||||||||||  |||||   ||| ||||| ||||||| ||||| ||  
seq2  TTGTTTTCCCAA--GCAGCTGTAGC-TTCAG-GTTGGGG-TTTCCTAG--  1088

seq1  TAACAAAGATAAAGGGTCTGGGGCCCTACCTACAAACCTTTAGGAACCCT  1149
      | ||||||||||  ||||||||  |||| ||||||    ||||  | |||
seq2  TTACAAAGATAA--GGTCTGGG--CCTA-CTACAA---CTTAG--AACCT  1128

seq1  TCCAA  1154
      |||||
seq2  TCCAA  1133

seq1: chr9_110263815_110264946
seq2: B6Ng01-125H11.g_68_1172 (reverse)

seq1  ATTTATTTTATATTAAGTTAAAAAATAGGCAAAGCTGGGCTGACAAGACG  50
      |||||||||||||| |||  |||||| ||||||||| |||||||||||| 
seq2  ATTTATTTTATATT-AGT--AAAAATGGGCAAAGCT-GGCTGACAAGAC-  45

seq1  GCTCAGTGGGTAAAGAGCATTTGCTGCTAAGCCTGACAGCCCAAGTTCAA  100
      |||||||||   ||||||| |||||||||   |||||||||  || ||| 
seq2  GCTCAGTGG--TAAGAGCA-TTGCTGCTA--GCTGACAGCC--AG-TCA-  86

seq1  TCCCCGGATCCCACATAGTACTAGGGATGAAAGAACCGGCTTCTGCAAGC  150
         || ||| ||||||||||||||||||||||||||  ||||||||||||
seq2  --TCCTGAT-CCACATAGTACTAGGGATGAAAGAAC--GCTTCTGCAAGC  131

seq1  TGCCCTCTGACCTCAACACGTGCCTGGGAGGTGCACCCCACACTAAATAA  200
      || ||||||||||| ||||||| ||||   ||||||||||||||||   |
seq2  TG-CCTCTGACCTC-ACACGTG-CTGG--AGTGCACCCCACACTAA--TA  174

seq1  ACAAATGGACGGATGTGGGGCCACATGGTAGAACGTACACATAGATAGAT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAAATGGACGGATGT-GGGCCACATGGTAGAACGTACACATAGATAGAT  223

seq1  GTACGCGTCTCAGCACCAAAAACAAAAGAAAAGCAAAATGACTCGGCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCGTCTCAGCACCAAAAACAAAAGAAAAGCAAAATGACTCGGCCGT  273

seq1  AGCACTGTCTGTGTTGATGGCTGTGACCAGGGCTGTCTTTTGAGCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTCTGTGTTGATGGCTGTGACCAGGGCTGTCTTTTGAGCTTCTG  323

seq1  GACACGTTCTGTAGCTTGATCTCGGTGGTGATTAGCTATAGGGTTATGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTTCTGTAGCTTGATCTCGGTGGTGATTAGCTATAGGGTTATGCG  373

seq1  TGGATGAAAGCTGTACATCCGATGTGTGTGTGTCATGCTGTATGTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAAGCTGTACATCCGATGTGTGTGTGTCATGCTGTATGTAAGTC  423

seq1  ACTTCCTCTGTGTCTGTCGTCTTGTTTTGAGGGTACCACCTCACAAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCTGTGTCTGTCGTCTTGTTTTGAGGGTACCACCTCACAAGGCC  473

seq1  TCGAGTTTGCCTCCCTCTTACACAGTTTATTTCTGAATATTAAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTTTGCCTCCCTCTTACACAGTTTATTTCTGAATATTAAAAAAAAT  523

seq1  TAAGTGAAACATGAAACAAAATAAAATACACATGTATTTCATAGCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAACATGAAACAAAATAAAATACACATGTATTTCATAGCTTGCT  573

seq1  GACATGAGGCCAGTTTCTTTACGTGTGATGGACCCATTAACCTGTGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGGCCAGTTTCTTTACGTGTGATGGACCCATTAACCTGTGCTCA  623

seq1  GCATGGCTGAGTGATCCCCAGCCTCAGGGTGTCTTTCACAATTCTTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTGAGTGATCCCCAGCCTCAGGGTGTCTTTCACAATTCTTATGA  673

seq1  TTTGTCCCTTTAAATAGAGCAGTTCCTCAGCTGTCGGAACCAGAATTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCTTTAAATAGAGCAGTTCCTCAGCTGTCGGAACCAGAATTTGT  723

seq1  ATCCTCTCCCCTAGTTTTTTTTTTTTAATCCTATGTCTGATTGATAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCCCCTAGTTTTTTTTTTTTAATCCTATGTCTGATTGATAAGAC  773

seq1  TTTGTGTTTAGCGTCTTGTCTAAAGCCTTAGAAAACAGTCAGCCAGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTAGCGTCTTGTCTAAAGCCTTAGAAAACAGTCAGCCAGCCTG  823

seq1  TTATACTAGTTGGGCTTCTTTGTAGGTTTTGTGGCTAAAATCTGTTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTAGTTGGGCTTCTTTGTAGGTTTTGTGGCTAAAATCTGTTTGAA  873

seq1  AATTCTGATCTCGATGATGTCTGAATTTCAGTGCTGAAATTCTGTGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATCTCGATGATGTCTGAATTTCAGTGCTGAAATTCTGTGGTAA  923

seq1  ATAAGATGGGGGTTTTACACAGTTCTGGCAGTGGGGATGCACTTGGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGGGGGTTTTACACAGTTCTGGCAGTGGGGATGCACTTGGAATT  973

seq1  GCAGTGGCTCCCGTGTCACCACCATCTCATAGACTCTGCCTCTCAGATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCTCCCGTGTCACCACCATCTCATAGACTCTGCCTCTCAGATGT  1023

seq1  CCTTATTCTTTCTCTCCTTTTCCTTCTCCCCAGCTACCCGCTGCTGAAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCTTTCTCTCCTTTTCCTTCTCCCCAGCTACCCGCTGCTGAAGC  1073

seq1  TCCCCTTGCCTGGAACGGGACCTGTGGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  TCCCCTTGCCTGGAACGGGACCTGTGGAATTC  1105