BAC Information

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BAC

Clone NameB6Ng01-125K20
Chromosome9 (Build37)
Map Location 59,733,040 - 59,888,754
singlet/doubletdoublet
Overlap geneMyo9a, Nr2e3, EG665389, Thsd4
Upstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385, LOC100040361
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125K20.bB6Ng01-125K20.g
ACCDH928247DH928248
length1,097118
definitionDH928247|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K20, 5' end.DH928248|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,733,040 - 59,734,153)(59,888,637 - 59,888,754)
sequence
gaattccacttgtgaggcattcttttcttaacagtgctcactcccctgat
gtctgcatcaatatcctttatagatttgcatgtatgtggccaaaggaata
ccttcatgtttccttaaaggcatagagaacaggtaataggtgccactcct
ttttccctttgtgttttatcactttggcaagttactggaagatggctgtt
atggccgaagtgcttttgctttaatttttaagaagtaatactatagctaa
gtacattactatgctgacacacatacacacacacactgaactttgtcttc
ttatgtggataactatgacttgggggaggtttcttaatcattatgtgatc
tattattgtgaaaggtgagggaaattgatatttttcagttttaagcttgt
agtatatgtaatatactctgtactaaattgctttaggaaaatacttttga
gtacaggacagccagccacagctggctcaaaacctccacccatccgttca
tccaagaaaagcgagaaaagaaaaatactttcagaaaataattttgtttt
ctttaagttgcttgtgggggagctggggtgaagctgcagcagagtgtttg
atgaagagtgagggactaaaagagtttagggttgaagagatgccttagca
gttacaagtacttactgctttttcagaggacctgttcagttctcagcacc
cctaagatggctcacaattgtttgttactttaatttgagactcgaatgcc
ctattctggcctccaaggacactaggcattctggtggtgcatatacatac
atgacaggcttttaaaacatccctaacactgtgaagggaacagacatcga
agcatcactagagctggctagtcactagtcaaggaactagaggagtggta
gagcaggtaaatcctcctttggcctctagtacacatagggatgtttatca
gtatgcataggtgtgtgtatacacccaacaacatagaaagttcatgtaat
tttatttttggataatttcttttaaaattattatagcatttggaccctta
gtgagatataggtatagaaaattgtatgtattggtagactacttttt
cagacttcataattgtgcagccaacactttaaccatcagtccaccttccc
agccaatggtggttggtgttggtgtgcgtcatgtctgtgtcatgtttgta
tgtgtgtgtggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59733040_59734153
seq2: B6Ng01-125K20.b_46_1142

seq1  GAATTCCACTTGTGAGGCATTCTTTTCTTAACAGTGCTCACTCCCCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGTGAGGCATTCTTTTCTTAACAGTGCTCACTCCCCTGAT  50

seq1  GTCTGCATCAATATCCTTTATAGATTTGCATGTATGTGGCCAAAGGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATCAATATCCTTTATAGATTTGCATGTATGTGGCCAAAGGAATA  100

seq1  CCTTCATGTTTCCTTAAAGGCATAGAGAACAGGTAATAGGTGCCACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTTTCCTTAAAGGCATAGAGAACAGGTAATAGGTGCCACTCCT  150

seq1  TTTTCCCTTTGTGTTTTATCACTTTGGCAAGTTACTGGAAGATGGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTTGTGTTTTATCACTTTGGCAAGTTACTGGAAGATGGCTGTT  200

seq1  ATGGCCGAAGTGCTTTTGCTTTAATTTTTAAGAAGTAATACTATAGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGAAGTGCTTTTGCTTTAATTTTTAAGAAGTAATACTATAGCTAA  250

seq1  GTACATTACTATGCTGACACACATACACACACACACTGAACTTTGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTACTATGCTGACACACATACACACACACACTGAACTTTGTCTTC  300

seq1  TTATGTGGATAACTATGACTTGGGGGAGGTTTCTTAATCATTATGTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGATAACTATGACTTGGGGGAGGTTTCTTAATCATTATGTGATC  350

seq1  TATTATTGTGAAAGGTGAGGGAAATTGATATTTTTCAGTTTTAAGCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTGAAAGGTGAGGGAAATTGATATTTTTCAGTTTTAAGCTTGT  400

seq1  AGTATATGTAATATACTCTGTACTAAATTGCTTTAGGAAAATACTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGTAATATACTCTGTACTAAATTGCTTTAGGAAAATACTTTTGA  450

seq1  GTACAGGACAGCCAGCCACAGCTGGCTCAAAACCTCCACCCATCCGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGACAGCCAGCCACAGCTGGCTCAAAACCTCCACCCATCCGTTCA  500

seq1  TCCAAGAAAAGCGAGAAAAGAAAAATACTTTCAGAAAATAATTTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAAAGCGAGAAAAGAAAAATACTTTCAGAAAATAATTTTGTTTT  550

seq1  CTTTAAGTTGCTTGTGGGGGAGCTGGGGTGAAGCTGCAGCAGAGTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTGCTTGTGGGGGAGCTGGGGTGAAGCTGCAGCAGAGTGTTTG  600

seq1  ATGAAGAGTGAGGGACTAAAAGAGTTTAGGGTTGAAGAGATGCCTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGTGAGGGACTAAAAGAGTTTAGGGTTGAAGAGATGCCTTAGCA  650

seq1  GTTACAAGTACTTACTGCTTTTTCAGAGGACCTGTTCAGTTCTCAGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGTACTTACTGCTTTTTCAGAGGACCTGTTCAGTTCTCAGCACC  700

seq1  CCTAAGATGGCTCACAATTGTTTGTTACTTTAATTTGAGACTCGAATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATGGCTCACAATTGTTTGTTACTTTAATTTGAGACTCGAATGCC  750

seq1  CTATTCTGGCCTCCAAGGACACTAGGCATTCTGGTGGTGCATATACATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGGCCTCCAAGGACACTAGGCATTCTGGTGGTGCATATACATAC  800

seq1  ATGACAGGCTTTTAAAACATCCCTAACACTGTGAAGGGAACAGACATCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGCTTTTAAAACATCCCTAACACTGTGAAGGGAACAGACATCGA  850

seq1  AGCATCACTAGAGCTGGCTAGTCACTAGTCAAGGAACTAGA-GAGTGGTA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATCACTAGAGCTGGCTAGTCACTAGTCAAGGAACTAGAGGAGTGGTA  900

seq1  GAGCAGGTAAAATCCTCCTTTGGCCTCTAGTACACATAGGGATGTTTATC  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGT-AAATCCTCCTTTGGCCTCTAGTACACATAGGGATGTTTATC  949

seq1  AGTATGCATAGGTGTGTGTATACACCCAAACACACATAGAAAGTTCATGT  999
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  AGTATGCATAGGTGTGTGTATACACCC-AACA-ACATAGAAAGTTCATGT  997

seq1  AATTTTTATTTTTGAATAAATATCTTTTAAAAATTATATAAGCATTTGGA  1049
      || ||||||||||| || ||| |||||| ||||||||   ||||||||||
seq2  AA-TTTTATTTTTGGAT-AATTTCTTTT-AAAATTATTATAGCATTTGGA  1044

seq1  CCCTTAGTGAAGATATTAAGGTATATTAAAAATATTTTTTCTTTTTTAAT  1099
      ||||||||| ||||||  |||||||  |||         |  | | || |
seq2  CCCTTAGTG-AGATAT--AGGTATAGAAAA---------TTGTATGTATT  1082

seq1  TGTAGACTACTTTTT  1114
       ||||||||||||||
seq2  GGTAGACTACTTTTT  1097

seq1: chr9_59888637_59888754
seq2: B6Ng01-125K20.g_71_188 (reverse)

seq1  CCCCCCCCCACACACACATACAAACATGACACAGACATGACGCACACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCACACACACATACAAACATGACACAGACATGACGCACACCAA  50

seq1  CACCAACCACCATTGGCTGGGAAGGTGGACTGATGGTTAAAGTGTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCACCATTGGCTGGGAAGGTGGACTGATGGTTAAAGTGTTGGCT  100

seq1  GCACAATTATGAAGTCTG  118
      ||||||||||||||||||
seq2  GCACAATTATGAAGTCTG  118