BAC Information

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BAC

Clone NameB6Ng01-125M13
Chromosome9 (Build37)
Map Location 69,524,702 - 69,663,507
singlet/doubletdoublet
Overlap geneFoxb1
Upstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
Downstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M13.bB6Ng01-125M13.g
ACCDH928323DH928324
length5591,055
definitionDH928323|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M13, 5' end.DH928324|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,524,702 - 69,525,260)(69,662,440 - 69,663,507)
sequence
gaattctttcctttatcctcttctactctgtgatacagcaatgatactct
ccccagcacgagtcacgtttgtttgtttgtttgtttgttttgagataggg
tctcacgttgtagaccagactgccctcaaacttaaagtgcactgcctttg
cctgctgagtactgagacgaaaggcttgggccactgtgcctagctctgaa
gtcacatttaaaaagtagcagtttaagattactgcatacttttttcttca
gctagatactctgtcttcccatccatcactctgtccttgcattgatctgt
caaccacttcacctatttttttttacaagaattcaaggctttttatagtt
tcctggctgcttttatcatggtctttcataacagtgtactagataataga
agaaatggatatttatgtaacctggctcactgagcataaacaaaatttct
ctctctctctctctctctctctctctatatatatatatatatatatatac
gtatatatatgtatatatatatgtatatatatatatatatatatatatat
atatatata
gaattctgagactcaaagaggtcaactcaattgccaaaagacaatgcatt
ttagaacaaggaattgaacccaagctggatgaacttgaaattgatgctca
ttccatttcatggaagcttccatttgagaatgatggggttagggttgcat
gcatggtcccggtcatgggaagatattcacacatggggagtgaggaaaac
aggattggattctgtccttcatttgggttactgtgataaaaatacccgga
caaaaagcgacttaggggagaaagggtttattttagcttacaatttgagg
ttacagttcatcatggtcagaaattcaaggcagggacttcaaagagctgg
tcacagcacatccatagtcaagagcagagagaaatggacatacacatgct
tgtattcagctcaggttttccacttgtatacagtttaggacatcctgcct
agggaatgatgccacccacagtggggctgaatcttttcataataatcaag
acaatgccttccagcattctatccctattgttgtgcagatctgtggttct
gaagcagcctccacaagaggtcagtaacttgaagagaagtgagttccttt
gtttaggatattacatgaagctttaaaacatctttatgactccaaattaa
aagtcaacacaggaggaagcatagaaaagagggggatgaaactacactaa
tgaccaaagagcactgactgtgtgtatgtaactcttgtcacacagcccct
tactttgtataattcacacacattcatttttaaacctccgcatagaacac
cgagagcgtgggggtaagcagcattttcatattattgaaaggcggggtaa
ttagttcaaatcttttcaaaaaacagtttgcaatttctataacaagtcga
ccaggaagtcaatgtctaagtatctagcctccacctgtgcatcctgcagc
tacactagtggggtgtgcacagaagactaagaaggagctctgtgtacact
ggctatacggcacggctcaagcaacaggagactggtgaaatgataggggt
agact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69524702_69525260
seq2: B6Ng01-125M13.b_47_605

seq1  GAATTCTTTCCTTTATCCTCTTCTACTCTGTGATACAGCAATGATACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTTATCCTCTTCTACTCTGTGATACAGCAATGATACTCT  50

seq1  CCCCAGCACGAGTCACGTTTGTTTGTTTGTTTGTTTGTTTTGAGATAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACGAGTCACGTTTGTTTGTTTGTTTGTTTGTTTTGAGATAGGG  100

seq1  TCTCACGTTGTAGACCAGACTGCCCTCAAACTTAAAGTGCACTGCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGTTGTAGACCAGACTGCCCTCAAACTTAAAGTGCACTGCCTTTG  150

seq1  CCTGCTGAGTACTGAGACGAAAGGCTTGGGCCACTGTGCCTAGCTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAGTACTGAGACGAAAGGCTTGGGCCACTGTGCCTAGCTCTGAA  200

seq1  GTCACATTTAAAAAGTAGCAGTTTAAGATTACTGCATACTTTTTTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTTAAAAAGTAGCAGTTTAAGATTACTGCATACTTTTTTCTTCA  250

seq1  GCTAGATACTCTGTCTTCCCATCCATCACTCTGTCCTTGCATTGATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATACTCTGTCTTCCCATCCATCACTCTGTCCTTGCATTGATCTGT  300

seq1  CAACCACTTCACCTATTTTTTTTTACAAGAATTCAAGGCTTTTTATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACTTCACCTATTTTTTTTTACAAGAATTCAAGGCTTTTTATAGTT  350

seq1  TCCTGGCTGCTTTTATCATGGTCTTTCATAACAGTGTACTAGATAATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGCTTTTATCATGGTCTTTCATAACAGTGTACTAGATAATAGA  400

seq1  AGAAATGGATATTTATGTAACCTGGCTCACTGAGCATAAACAAAATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGATATTTATGTAACCTGGCTCACTGAGCATAAACAAAATTTCT  450

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATAC  500

seq1  GTATATATATGTATATATATATGTATATATATATATATATATATATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATATGTATATATATATGTATATATATATATATATATATATATAT  550

seq1  ATATATATA  559
      |||||||||
seq2  ATATATATA  559

seq1: chr9_69662440_69663507
seq2: B6Ng01-125M13.g_66_1120 (reverse)

seq1  AGTCTGCCCCCTATCATTTCACCAGTCTCCTGTTGCTTTGAGCCCCGTGC  50
      |||||  ||||||||||||||||||||||||||||| |||||  ||||||
seq2  AGTCT-ACCCCTATCATTTCACCAGTCTCCTGTTGC-TTGAG--CCGTGC  46

seq1  AGTTCTAGCCAGTGTTACACAGAGCATCCTTCCTTAGTCTTCTTGGTGCA  100
       | | ||||||||| |||||||||| ||||| |||||||||||  |||||
seq2  CG-TATAGCCAGTG-TACACAGAGC-TCCTT-CTTAGTCTTCT--GTGCA  90

seq1  CA-CACACTAGTGTAGCTGCAGGATGTGACAGGTGGAGGCTAAATTCCTA  149
      || | |||||||||||||||||||||  |||||||||||||| || | ||
seq2  CACCCCACTAGTGTAGCTGCAGGATG-CACAGGTGGAGGCTAGATACTTA  139

seq1  GACATTGACTTCCTGGGTCGACTTGTTATAGAAATTGCAAAACTGTTTTT  199
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GACATTGACTTCCT-GGTCGACTTGTTATAGAAATTGC-AAACTGTTTTT  187

seq1  TGAAAAAGGTTTGAACTAATTTACCCGCCTTTCAATAATATGAAAATGCT  249
      || ||||| ||||||||||||  |||||||||||||||||||||||||||
seq2  TG-AAAAGATTTGAACTAATTACCCCGCCTTTCAATAATATGAAAATGCT  236

seq1  GCTTA-CCCCACGCTCTCGGTGTTCTATGTGGAGGTTTTAAAAATGAATG  298
      ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
seq2  GCTTACCCCCACGCTCTCGGTGTTCTATGCGGAGG-TTTAAAAATGAATG  285

seq1  TGTGTTAATTATACAAAGTAAGGGGCTTTGTTACAAGAGTTACATACACA  348
      ||||| ||||||||||||||||||||| ||| ||||||||||||||||||
seq2  TGTGTGAATTATACAAAGTAAGGGGCTGTGTGACAAGAGTTACATACACA  335

seq1  CAGTCAGTGCTCTTTGGTCATTAGTGTAGTTTCATCCCCCTCTTTTCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGCTCTTTGGTCATTAGTGTAGTTTCATCCCCCTCTTTTCTAT  385

seq1  GCTTCCTCCTGTGTTGACTTTTAATTTGGAGTCATAAAGATGTTTTAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCTGTGTTGACTTTTAATTTGGAGTCATAAAGATGTTTTAAAG  435

seq1  CTTCATGTAATATCCTAAACAAAGGAACTCACTTCTCTTCAAGTTACTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTAATATCCTAAACAAAGGAACTCACTTCTCTTCAAGTTACTGA  485

seq1  CCTCTTGTGGAGGCTGCTTCAGAACCACAGATCTGCACAACAATAGGGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTGGAGGCTGCTTCAGAACCACAGATCTGCACAACAATAGGGAT  535

seq1  AGAATGCTGGAAGGCATTGTCTTGATTATTATGAAAAGATTCAGCCCCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTGGAAGGCATTGTCTTGATTATTATGAAAAGATTCAGCCCCAC  585

seq1  TGTGGGTGGCATCATTCCCTAGGCAGGATGTCCTAAACTGTATACAAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGCATCATTCCCTAGGCAGGATGTCCTAAACTGTATACAAGTG  635

seq1  GAAAACCTGAGCTGAATACAAGCATGTGTATGTCCATTTCTCTCTGCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGAGCTGAATACAAGCATGTGTATGTCCATTTCTCTCTGCTCT  685

seq1  TGACTATGGATGTGCTGTGACCAGCTCTTTGAAGTCCCTGCCTTGAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATGGATGTGCTGTGACCAGCTCTTTGAAGTCCCTGCCTTGAATTT  735

seq1  CTGACCATGATGAACTGTAACCTCAAATTGTAAGCTAAAATAAACCCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGATGAACTGTAACCTCAAATTGTAAGCTAAAATAAACCCTTT  785

seq1  CTCCCCTAAGTCGCTTTTTGTCCGGGTATTTTTATCACAGTAACCCAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTAAGTCGCTTTTTGTCCGGGTATTTTTATCACAGTAACCCAAAT  835

seq1  GAAGGACAGAATCCAATCCTGTTTTCCTCACTCCCCATGTGTGAATATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAGAATCCAATCCTGTTTTCCTCACTCCCCATGTGTGAATATCT  885

seq1  TCCCATGACCGGGACCATGCATGCAACCCTAACCCCATCATTCTCAAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGACCGGGACCATGCATGCAACCCTAACCCCATCATTCTCAAATG  935

seq1  GAAGCTTCCATGAAATGGAATGAGCATCAATTTCAAGTTCATCCAGCTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCCATGAAATGGAATGAGCATCAATTTCAAGTTCATCCAGCTTG  985

seq1  GGTTCAATTCCTTGTTCTAAAATGCATTGTCTTTTGGCAATTGAGTTGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTCCTTGTTCTAAAATGCATTGTCTTTTGGCAATTGAGTTGAC  1035

seq1  CTCTTTGAGTCTCAGAATTC  1068
      ||||||||||||||||||||
seq2  CTCTTTGAGTCTCAGAATTC  1055