BAC Information

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BAC

Clone NameB6Ng01-126B04
Chromosome9 (Build37)
Map Location 84,017,036 - 84,142,580
singlet/doubletdoublet
Overlap geneBckdhb
Upstream geneHmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150
Downstream geneEG666669, LOC666672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B04.bB6Ng01-126B04.g
ACCDH928537DH928538
length1,229881
definitionDH928537|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B04, 5' end.DH928538|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,017,036 - 84,018,300)(84,141,692 - 84,142,580)
sequence
gaattcttaaattctctaagtgggttacggagttagcttgtaaaagatga
gagaaagcatttatgcaaaccgtgcccccttatgttactatgtccccact
gtttgacagctgtgttttgagaatattgttacaggtatcaattagggttg
ttgaccacactccctgcaggtacagagacttctgatgcctctttaaatgc
ctgtgaaaatagtaggtttctctagtcagcagcccttagggcagattggc
tgtcttcctctggggagtctctccaggcactgggtgctggggagtcaagg
aaatgtggccatattcctcaatgctaatgttaaaatactttttaaaaatg
ttgtttttatgtctctaaatttaggttgtgcgtttggatttaaatgtaag
caaagtgtgtaaactcatgccaacaatgtgataaaagaataaaatagttc
ttctgtggtgaaaaattaaatatgttacgaatgatagtaagcctgtacag
aactaagaatgcttctaattgttactgatttcttttacagaaaaccagga
agatcatgaccagacatggaaatatttttctgaaacctttttatatttcc
ttatacttctttcttcttacatatagttttatgcaacgaactgtcatgga
tattggctgatgagctgcgaattacttatcatgttaatataaatggattg
agtgcacaggaggaatgctttaaggagtgcgtgggcggtgatcttaagac
tgtttcatgactataaataccgggtggtgttgtattcaataaagccaaat
tacatcgcctcagactgtgtgtgtgtcctcttctttagttaggaaagagg
gttttcattgcagaataatgggttgttaacttgctaactgaatttgagtt
aaagtaaaatatttattctagaaatgctgacttttccattttgttgtatt
tggtttaattctttatggtcagatggtttgtgttggcataacttttggaa
ttttttctcatcactccctctggttcaacaggtgctggtggacccagctc
ctcagactagtgggacataatcagcctcagagaagatgatgacatgatcc
tgttattataaattgctaagctctagtgcagggattgtggtgggttcaaa
tgtcaaaatgaattatgaatctggtggatagacaaatatagcaaagcgca
atgtatctgccaggtggagcgctttccta
gaattcactcacactattcttggatttcaaaaaataataaatggagctgt
cttttcacagacatgtgccatattttaggaaacataacattgtaagtata
tggaatggttaaacaatgtaaaacaccatttgattaatgtctgatgtaaa
tggtatacacagggaatcataaagagttctgaaagcagtcaacagtgtgg
atcaaatagttagctaaagattacccaggggacttgaaatgaattgtgac
gtttgagtgagagaccatttccacctagaaagaaacaagatttactttgt
acaatagctaaaaatcatgatggacaccttatataaaacctaaggaacac
atgaagttgtataacaacacactgcacttagggatgaatacttttaaact
gtacctgttagctaaggtaaagaatggtgtatttgaattctgtatgatcc
atggctctaaaattcaaggacaaacaaatcctaagtatgaataaggacac
tggacctggtggctagctttaggcaggatattatacccaaataaataact
ttaaatgtaattgctattgacttggatggaaaacaagaaaatacactggg
atatagaaatattctctcttgaactaaatgatggagattgcacagacaca
aaaattcaccaagccctgcacttaggggttgtgcacttgtaagtaacatg
gtatagataaatgaataaaggttggggtctgtgagaggaacaggattata
ggataatataaattgagcatgaaatgcttacacagctgcctattctagct
ccagccttaaagatcaaggagtctctgcttgttgtgtgtggaggcctcac
atcacctggtgatatactgtctggttggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84017036_84018300
seq2: B6Ng01-126B04.b_45_1273

seq1  GAATTCTTAAATTCTCTAAGTGGGTTACGGAGTTAGCTTGTAAAAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATTCTCTAAGTGGGTTACGGAGTTAGCTTGTAAAAGATGA  50

seq1  GAGAAAGCATTTATGCAAACCGTGCCCCCTTATGTTACTATGTCCCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCATTTATGCAAACCGTGCCCCCTTATGTTACTATGTCCCCACT  100

seq1  GTTTGACAGCTGTGTTTTGAGAATATTGTTACAGGTATCAATTAGGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACAGCTGTGTTTTGAGAATATTGTTACAGGTATCAATTAGGGTTG  150

seq1  TTGACCACACTCCCTGCAGGTACAGAGACTTCTGATGCCTCTTTAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACACTCCCTGCAGGTACAGAGACTTCTGATGCCTCTTTAAATGC  200

seq1  CTGTGAAAATAGTAGGTTTCTCTAGTCAGCAGCCCTTAGGGCAGATTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAATAGTAGGTTTCTCTAGTCAGCAGCCCTTAGGGCAGATTGGC  250

seq1  TGTCTTCCTCTGGGGAGTCTCTCCAGGCACTGGGTGCTGGGGAGTCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTCTGGGGAGTCTCTCCAGGCACTGGGTGCTGGGGAGTCAAGG  300

seq1  AAATGTGGCCATATTCCTCAATGCTAATGTTAAAATACTTTTTAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGCCATATTCCTCAATGCTAATGTTAAAATACTTTTTAAAAATG  350

seq1  TTGTTTTTATGTCTCTAAATTTAGGTTGTGCGTTTGGATTTAAATGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTATGTCTCTAAATTTAGGTTGTGCGTTTGGATTTAAATGTAAG  400

seq1  CAAAGTGTGTAAACTCATGCCAACAATGTGATAAAAGAATAAAATAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTGTAAACTCATGCCAACAATGTGATAAAAGAATAAAATAGTTC  450

seq1  TTCTGTGGTGAAAAATTAAATATGTTACGAATGATAGTAAGCCTGTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGTGAAAAATTAAATATGTTACGAATGATAGTAAGCCTGTACAG  500

seq1  AACTAAGAATGCTTCTAATTGTTACTGATTTCTTTTACAGAAAACCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGAATGCTTCTAATTGTTACTGATTTCTTTTACAGAAAACCAGGA  550

seq1  AGATCATGACCAGACATGGAAATATTTTTCTGAAACCTTTTTATATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGACCAGACATGGAAATATTTTTCTGAAACCTTTTTATATTTCC  600

seq1  TTATACTTCTTTCTTCTTACATATAGTTTTATGCAACGAACTGTCATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTCTTTCTTCTTACATATAGTTTTATGCAACGAACTGTCATGGA  650

seq1  TATTGGCTGATGAGCTGCGAATTACTTATCATGTTAATATAAATGGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTGATGAGCTGCGAATTACTTATCATGTTAATATAAATGGATTG  700

seq1  AGTGCACAGGAGGAATGCTTTAAGGAGTGCGTGGGCGGTGATCTTAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAGGAGGAATGCTTTAAGGAGTGCGTGGGCGGTGATCTTAAGAC  750

seq1  TGTTTCATGACTATAAATACCGGGTGGTGTTGTATTCAATAAAGCCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGACTATAAATACCGGGTGGTGTTGTATTCAATAAAGCCAAAT  800

seq1  TACATCGCCTCAGACTGTGTGTGTGTCCTCTTCTTTAGTTAGGAAAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCGCCTCAGACTGTGTGTGTGTCCTCTTCTTTAGTTAGGAAAGAGG  850

seq1  GTTTTCATTGCAGAATAATGGGTTGTTAACTTGCTAACTGAATTTGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTGCAGAATAATGGGTTGTTAACTTGCTAACTGAATTTGAGTT  900

seq1  AAAGTAAAATATTTATTCTAGAAATGCTGACTTTTCCATTTTGTTGTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATATTTATTCTAGAAATGCTGACTTTTCCATTTTGTTGTATT  950

seq1  TGGTTTAATTCTTTATGGTCAAGATGGTTTTGTGTTGGCATAACTTTTGG  1000
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TGGTTTAATTCTTTATGGTC-AGATGG-TTTGTGTTGGCATAACTTTTGG  998

seq1  AATTTTTTCTCCATCACTCCCTCTTGGTTCAACAAGGTTGCTGGTGGACC  1050
      |||||||||| |||||||||||| ||||||||||  | ||||||||||||
seq2  AATTTTTTCT-CATCACTCCCTC-TGGTTCAACA--GGTGCTGGTGGACC  1044

seq1  CAGCTCCTCCAGACTAGTGGGACATAATCAGCCTCAGAG-AGATGGATGA  1099
      |||||||| |||||||||||||||||||||||||||||| |||| |||||
seq2  CAGCTCCT-CAGACTAGTGGGACATAATCAGCCTCAGAGAAGAT-GATGA  1092

seq1  CATGATCCTGTTAATTATAAAATTGCTAAGCTCTAGTTGCAGGGGTTTTT  1149
      |||||||||||| ||||| ||||||||||||||||| ||||||| ||   
seq2  CATGATCCTGTT-ATTAT-AAATTGCTAAGCTCTAG-TGCAGGGATT---  1136

seq1  TGTTGTTGTTGTTTTTAAATATGCAAAAAAAATTGAATTTTTATTTGTAT  1199
            || ||  || |||| | |||||     |||||| |       | 
seq2  -----GTGGTGGGTTCAAATGT-CAAAA-----TGAATTAT------GAA  1169

seq1  TCTTGTGTAGATAAGACAAAAATATTAGCAAGCAGCAATTGATTCTGCCA  1249
      ||| |||  ||| ||||||| |   ||||||   |||| ||  |||||||
seq2  TCTGGTG--GAT-AGACAAATA---TAGCAAAGCGCAA-TGTATCTGCCA  1212

seq1  GGTGGAGC-CTTTCCTA  1265
      |||||||| ||||||||
seq2  GGTGGAGCGCTTTCCTA  1229

seq1: chr9_84141692_84142580
seq2: B6Ng01-126B04.g_68_948 (reverse)

seq1  CCACCAACCAGACAGTATA-CACCAGCTGATGTGAGGCCTCCAACACACA  49
      ||||||||||||||||||| |||||| ||||||||||||||| |||||||
seq2  CCACCAACCAGACAGTATATCACCAGGTGATGTGAGGCCTCC-ACACACA  49

seq1  TACAGCAGAGGACTCCCTGATCTGTAAAGGCTGGAGCTAGGATAGGCAGC  99
         |||||| |||||| |||||| | |||||||||||||| |||||||||
seq2  ACAAGCAGA-GACTCCTTGATCT-TTAAGGCTGGAGCTAGAATAGGCAGC  97

seq1  TGTGTAAGCATTTTCCATTGCTCAATTTATATTATCCTAATAATCCTGTT  149
      |||||||||||||  || |||||||||||||||||||| ||||||||| |
seq2  TGTGTAAGCATTT--CA-TGCTCAATTTATATTATCCT-ATAATCCTG-T  142

seq1  TCCTCTCACAGACCCCAACCTTTATTCATTTATCTAATACCATGTTACTT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCTCTCACAGACCCCAACCTTTATTCATTTATCT-ATACCATGTTACTT  191

seq1  ACAAGTGCACAACCCCTAAGTGCAGGGCTTGGTGAATTTTTGTGTCTGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCACAACCCCTAAGTGCAGGGCTTGGTGAATTTTTGTGTCTGTG  241

seq1  CAATCTCCATCATTTAGTTCAAGAGAGAATATTTCTATATCCCAGTGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCATCATTTAGTTCAAGAGAGAATATTTCTATATCCCAGTGTAT  291

seq1  TTTCTTGTTTTCCATCCAAGTCAATAGCAATTACATTTAAAGTTATTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTTCCATCCAAGTCAATAGCAATTACATTTAAAGTTATTTAT  341

seq1  TTGGGTATAATATCCTGCCTAAAGCTAGCCACCAGGTCCAGTGTCCTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATAATATCCTGCCTAAAGCTAGCCACCAGGTCCAGTGTCCTTAT  391

seq1  TCATACTTAGGATTTGTTTGTCCTTGAATTTTAGAGCCATGGATCATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTAGGATTTGTTTGTCCTTGAATTTTAGAGCCATGGATCATACA  441

seq1  GAATTCAAATACACCATTCTTTACCTTAGCTAACAGGTACAGTTTAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACACCATTCTTTACCTTAGCTAACAGGTACAGTTTAAAAG  491

seq1  TATTCATCCCTAAGTGCAGTGTGTTGTTATACAACTTCATGTGTTCCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCCCTAAGTGCAGTGTGTTGTTATACAACTTCATGTGTTCCTTA  541

seq1  GGTTTTATATAAGGTGTCCATCATGATTTTTAGCTATTGTACAAAGTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATATAAGGTGTCCATCATGATTTTTAGCTATTGTACAAAGTAAA  591

seq1  TCTTGTTTCTTTCTAGGTGGAAATGGTCTCTCACTCAAACGTCACAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCTTTCTAGGTGGAAATGGTCTCTCACTCAAACGTCACAATTC  641

seq1  ATTTCAAGTCCCCTGGGTAATCTTTAGCTAACTATTTGATCCACACTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTCCCCTGGGTAATCTTTAGCTAACTATTTGATCCACACTGTT  691

seq1  GACTGCTTTCAGAACTCTTTATGATTCCCTGTGTATACCATTTACATCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTTCAGAACTCTTTATGATTCCCTGTGTATACCATTTACATCAG  741

seq1  ACATTAATCAAATGGTGTTTTACATTGTTTAACCATTCCATATACTTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATCAAATGGTGTTTTACATTGTTTAACCATTCCATATACTTACA  791

seq1  ATGTTATGTTTCCTAAAATATGGCACATGTCTGTGAAAAGACAGCTCCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTTTCCTAAAATATGGCACATGTCTGTGAAAAGACAGCTCCAT  841

seq1  TTATTATTTTTTGAAATCCAAGAATAGTGTGAGTGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTTTGAAATCCAAGAATAGTGTGAGTGAATTC  881