BAC Information

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BAC

Clone NameB6Ng01-126D01
Chromosome9 (Build37)
Map Location 81,742,623 - 81,840,005
singlet/doubletdoublet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126D01.bB6Ng01-126D01.g
ACCDH928626DH928627
length1,168978
definitionDH928626|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D01, 5' end.DH928627|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,742,623 - 81,743,797)(81,838,997 - 81,840,005)
sequence
gaattcactggattctagaatatacagttttaaacaccatgctaaactga
ctgttcagtataggccgcagcagcttcataaatcttaaataatgcatgta
tagaaatgaatagttaatcgggtagaagccatgtatgcctgaagcttaag
ggaatatcagatttgagaggcatttgctcttcccataaagaagctgtgtc
ttattactaatgtcctaaagacatctggccaagaattaatataatcaact
ccagtataaaagtgtccttaacatggttaatattctaccagcctctttaa
tcttcaactctacttctaataactcaccaccaacaaaacaagtggctttc
ataagtttgtttgaaaaataagtgtgcacaatctaaatatttgagataga
tattacattaatattcaaatattaaaagttacacagataattagaatagt
tgtttcccaaatattcttagccattttttttctgaaagtacttgaataaa
tattgccatcccacagtcaacaattccaacccaggattgttcctgtctaa
aagaacatcagggacaaaaatggggaagagactcagggaaaggaggtcta
gtgactagcccaatttgggatccatctcagggggaggctccagacccaac
actattactattgttattattactatttattaatattaatgttaatatta
caattattactatttattactatagtttgcttacagacaagagcctagca
tggctgccctctgaaaagcccaacaagcagctgaaagaaccagatgcaga
ttcatacactcaaccaatgggctgagtcagagggaggaggaatgggatga
gaactgtgggagggaagaccaggaaaaggtaacaactggactgaaaaaaa
aatgtaattaaaaatattacaattatagttccatgctattttcttttcag
aagagctgaaaataaagtcctgtggtaaggaaaacagtcctagccgcccc
cattgtttgctcagaactagtaaagttcattatggaaattatttatggta
cttcacttagagtaacctgaggaacttgcagttccatattgtagacagaa
gtttatattgaagcctagtggtcaagtatgtttttacactgttgatgcat
cggttcataattgcccta
gaattcaagagtaaaacccactatgaaacaaatcattgaatctctaaaaa
agaccctggacttctatgggatgcagccacaagtaaagctttgggaaggt
accaactatcttgttcaaagaaaagtacttataactcaaatacttaaagt
tagatctggggtctttatggctgctctcgtgggaatattgtatcatctct
ttgcatctcagttttcatatctgtaatgcaggaaaaccattttcccagac
tgtggctaaaattatacctactgatcatttcaaagtagttagcaagaact
cagtgaatgtaggtctaagaaattagaagttggaatcaaaatctgttaat
gaggtgtttctaaagtttaacgtctgtatgaagtacctggggaccttatt
aaaatacagattgaaattcgattgttctgagataggggctcaagagcctg
tatttttacaaggtttcaggcgatgcgcgcatggctgatcccttaaccat
attctgagtattgcaaggttaatgcacattaaagcaggagccagcatgca
cgtgctgtggggaagaacagcttgcctttgcaaacgctacccacaatgct
gtggggttttgtaattaaaaaaggaaaagggaagtagaacttctgcttat
agctgtcatggccatctacaccatcatataatatattactcagagattgg
gattaagtcattaataatgctttaccttaatatgttacttagtttttaaa
aagagaataaaatgattatggaactgtttgcgttcatgagtatggctcgt
gaatgaatttggtaatttgccatgatcctgacatcctcctaattacgtct
gtgttttttttctttgtcctgatttttttttggcggttgttggcctgcta
ttgttaggttggaaaagaactaaggacttctgagcaagcattctgctggt
atacccagctgaaacccttttctttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81742623_81743797
seq2: B6Ng01-126D01.b_50_1217

seq1  GAATTCACTGGATTCTAGAATATACAGTTTTAAACACCATGCTAAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGATTCTAGAATATACAGTTTTAAACACCATGCTAAACTGA  50

seq1  CTGTTCAGTATAGGCCGCAGCAGCTTCATAAATCTTAAATAATGCATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGTATAGGCCGCAGCAGCTTCATAAATCTTAAATAATGCATGTA  100

seq1  TAGAAATGAATAGTTAATCGGGTAGAAGCCATGTATGCCTGAAGCTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGAATAGTTAATCGGGTAGAAGCCATGTATGCCTGAAGCTTAAG  150

seq1  GGAATATCAGATTTGAGAGGCATTTGCTCTTCCCATAAAGAAGCTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATCAGATTTGAGAGGCATTTGCTCTTCCCATAAAGAAGCTGTGTC  200

seq1  TTATTACTAATGTCCTAAAGACATCTGGCCAAGAATTAATATAATCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTAATGTCCTAAAGACATCTGGCCAAGAATTAATATAATCAACT  250

seq1  CCAGTATAAAAGTGTCCTTAACATGGTTAATATTCTACCAGCCTCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATAAAAGTGTCCTTAACATGGTTAATATTCTACCAGCCTCTTTAA  300

seq1  TCTTCAACTCTACTTCTAATAACTCACCACCAACAAAACAAGTGGCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACTCTACTTCTAATAACTCACCACCAACAAAACAAGTGGCTTTC  350

seq1  ATAAGTTTGTTTGAAAAATAAGTGTGCACAATCTAAATATTTGAGATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTGTTTGAAAAATAAGTGTGCACAATCTAAATATTTGAGATAGA  400

seq1  TATTACATTAATATTCAAATATTAAAAGTTACACAGATAATTAGAATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATTAATATTCAAATATTAAAAGTTACACAGATAATTAGAATAGT  450

seq1  TGTTTCCCAAATATTCTTAGCCATTTTTTTTCTGAAAGTACTTGAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCAAATATTCTTAGCCATTTTTTTTCTGAAAGTACTTGAATAAA  500

seq1  TATTGCCATCCCACAGTCAACAATTCCAACCCAGGATTGTTCCTGTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCATCCCACAGTCAACAATTCCAACCCAGGATTGTTCCTGTCTAA  550

seq1  AAGAACATCAGGGACAAAAATGGGGAAGAGACTCAGGGAAAGGAGGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATCAGGGACAAAAATGGGGAAGAGACTCAGGGAAAGGAGGTCTA  600

seq1  GTGACTAGCCCAATTTGGGATCCATCTCAGGGGGAGGCTCCAGACCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAGCCCAATTTGGGATCCATCTCAGGGGGAGGCTCCAGACCCAAC  650

seq1  ACTATTACTATTGTTATTATTACTATTTATTAATATTAATGTTAATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACTATTGTTATTATTACTATTTATTAATATTAATGTTAATATTA  700

seq1  CAATTATTACTATTTATTACTATAGTTTGCTTACAGACAAGAGCCTAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTACTATTTATTACTATAGTTTGCTTACAGACAAGAGCCTAGCA  750

seq1  TGGCTGCCCTCTGAAAAGCCCAACAAGCAGCTGAAAGAACCAGATGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCCTCTGAAAAGCCCAACAAGCAGCTGAAAGAACCAGATGCAGA  800

seq1  TTCATACACTCAACCAATGGGCTGAGTCAGAGGGAGGAGGAATGGGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACACTCAACCAATGGGCTGAGTCAGAGGGAGGAGGAATGGGATGA  850

seq1  GAACTGTGGGAGGGAAGACCAGGAAAAGGTAACAACTGGACTGAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGGGAGGGAAGACCAGGAAAAGGTAACAACTGGACTGAAAAAAA  900

seq1  AATGTAATTAAAAATATTACAATTTATAGTTCCATGCTATTTTCTTTTCA  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGTAATTAAAAATATTACAA-TTATAGTTCCATGCTATTTTCTTTTCA  949

seq1  GAAGAGCTG-AAATAAAGTCCTGTGGTAAGGAAAACAGTCCTAGCCGCCA  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  GAAGAGCTGAAAATAAAGTCCTGTGGTAAGGAAAACAGTCCTAGCCGCCC  999

seq1  CCCATG-TTGCTCAGAACTAGTAAAGTTCATTATGGAAATCA-TTATGGT  1047
      ||  || ||||||||||||||||||||||||||||||||| | |||||||
seq2  CCATTGTTTGCTCAGAACTAGTAAAGTTCATTATGGAAATTATTTATGGT  1049

seq1  ACTTCACTTAGGAGTACACTGAGACAC-TGCAGTTCCAATATTGTAGGAC  1096
      |||||||||| |||||  |||||  || ||||||||| |||||||| |||
seq2  ACTTCACTTA-GAGTAACCTGAGGAACTTGCAGTTCC-ATATTGTA-GAC  1096

seq1  AGACAGTTTATAAATGAAGCTTTAGTGTGTCAAGTATGTTTTTACACTGT  1146
      ||| ||||||| | ||||||  ||||| ||||||||||||||||||||||
seq2  AGA-AGTTTAT-ATTGAAGC-CTAGTG-GTCAAGTATGTTTTTACACTGT  1142

seq1  TGATGCATCTGTTCCATTAATATGCCCTA  1175
      ||||||||| ||||   |||| |||||||
seq2  TGATGCATCGGTTC--ATAAT-TGCCCTA  1168

seq1: chr9_81838997_81840005
seq2: B6Ng01-126D01.g_66_1043 (reverse)

seq1  AAAAAAGAAAAGAGGGTTTCAAAGGCTGGGGTATAACTCAGCAGGAATGC  50
      ||||||||||  |||||||||   ||| |||||||   ||||| ||||||
seq2  AAAAAAGAAA--AGGGTTTCA---GCT-GGGTATA--CCAGCA-GAATGC  41

seq1  TTGCCTCAGAAGTCCTTAGGTTCTATTCCCAGAACCATAAAACAAAATAA  100
      ||| |||||||||||||| ||||| ||||           |||  || ||
seq2  TTG-CTCAGAAGTCCTTA-GTTCTTTTCC-----------AACCTAACAA  78

seq1  GACAAGACAAACAAACAGACAAAAAAAAAAATCAAGGAACAAAAGAAAAA  150
       |  || | ||| ||| | |  ||||||||||||  | |||||   ||||
seq2  TAGCAGGCCAAC-AACCGCC--AAAAAAAAATCA--GGACAAA--GAAAA  121

seq1  AAAACACAGACGTATATAAGAGGATGTCAGGATCATGGCAAAATTACCAA  200
      ||||||||||||||  || |||||||||||||||||||| ||||||||||
seq2  AAAACACAGACGTAATTAGGAGGATGTCAGGATCATGGC-AAATTACCAA  170

seq1  ATTCAATCCACGAGCCATACTCATGAACGCAAACAGTTCCATAATCATTT  250
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTC-ATTCACGAGCCATACTCATGAACGCAAACAGTTCCATAATCATTT  219

seq1  TATTCTCTTTTTAAAAACTAAGTAACATATTAAGGTAAAGCATTATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTTTTTAAAAACTAAGTAACATATTAAGGTAAAGCATTATTAAT  269

seq1  GACTTAATCCCAATCTCTGAGTAATATATTATATGATGGTGTAGATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATCCCAATCTCTGAGTAATATATTATATGATGGTGTAGATGGCC  319

seq1  ATGACAGCTATAAGCAGAAGTTCTACTTCCCTTTTCCTTTTTTAATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTATAAGCAGAAGTTCTACTTCCCTTTTCCTTTTTTAATTACA  369

seq1  AAACCCCACAGCATTGTGGGTAGCGTTTGCAAAGGCAAGCTGTTCTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACAGCATTGTGGGTAGCGTTTGCAAAGGCAAGCTGTTCTTCCC  419

seq1  CACAGCACGTGCATGCTGGCTCCTGCTTTAATGTGCATTAACCTTGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACGTGCATGCTGGCTCCTGCTTTAATGTGCATTAACCTTGCAAT  469

seq1  ACTCAGAATATGGTTAAGGGATCAGCCATGCGCGCATCGCCTGAAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATATGGTTAAGGGATCAGCCATGCGCGCATCGCCTGAAACCTT  519

seq1  GTAAAAATACAGGCTCTTGAGCCCCTATCTCAGAACAATCGAATTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATACAGGCTCTTGAGCCCCTATCTCAGAACAATCGAATTTCAAT  569

seq1  CTGTATTTTAATAAGGTCCCCAGGTACTTCATACAGACGTTAAACTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTTAATAAGGTCCCCAGGTACTTCATACAGACGTTAAACTTTAG  619

seq1  AAACACCTCATTAACAGATTTTGATTCCAACTTCTAATTTCTTAGACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTCATTAACAGATTTTGATTCCAACTTCTAATTTCTTAGACCTA  669

seq1  CATTCACTGAGTTCTTGCTAACTACTTTGAAATGATCAGTAGGTATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTGAGTTCTTGCTAACTACTTTGAAATGATCAGTAGGTATAATT  719

seq1  TTAGCCACAGTCTGGGAAAATGGTTTTCCTGCATTACAGATATGAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCACAGTCTGGGAAAATGGTTTTCCTGCATTACAGATATGAAAACT  769

seq1  GAGATGCAAAGAGATGATACAATATTCCCACGAGAGCAGCCATAAAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAAAGAGATGATACAATATTCCCACGAGAGCAGCCATAAAGACC  819

seq1  CCAGATCTAACTTTAAGTATTTGAGTTATAAGTACTTTTCTTTGAACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTAACTTTAAGTATTTGAGTTATAAGTACTTTTCTTTGAACAAG  869

seq1  ATAGTTGGTACCTTCCCAAAGCTTTACTTGTGGCTGCATCCCATAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGGTACCTTCCCAAAGCTTTACTTGTGGCTGCATCCCATAGAAGT  919

seq1  CCAGGGTCTTTTTTAGAGATTCAATGATTTGTTTCATAGTGGGTTTTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTTTTTTAGAGATTCAATGATTTGTTTCATAGTGGGTTTTACT  969

seq1  CTTGAATTC  1009
      |||||||||
seq2  CTTGAATTC  978