BAC Information

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BAC

Clone NameB6Ng01-126D11
Chromosome9 (Build37)
Map Location 57,984,337 - 58,123,356
singlet/doubletdoublet
Overlap geneStra6, Islr, Islr2, LOC665268, Pml, Stoml1
Upstream geneMan2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik
Downstream geneLoxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126D11.bB6Ng01-126D11.g
ACCDH928646DH928647
length1,1081,002
definitionDH928646|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D11, 5' end.DH928647|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,122,232 - 58,123,356)(57,984,337 - 57,985,341)
sequence
gaattccgtttctaacttgcctctgacctcaactctgaccgctttagtaa
atcctgcctcttcctgctacaaagtaaccttcctgttacgatgtaactga
cagctctcctgtggctctcaacagactcagaatgacttttcacatatgca
aataatcaaagggttttccacccacacgcatgtcctctgcctgactcctg
ataccctctgaggcaatgtccctagctaacagtgtcttgaggattttttt
cacttctcagcagcttgagtcacacttgcttcctctggagtggctggctg
ccaccaccccccccatccccccatgcactgcactgttccagtgcgtgaca
gtccttagtcacgccccctctcctctttctagtcatacttccatttgact
caagtttcaaaacaaccggttctttttaaaactaaaaacggatttaccag
aaggcccagcagttccagtgtctcacatttatcccagagaaaatgacatt
tatttccccagtaggacctggacacaatgttcacagcagctttatttgta
atagcccccaataaataaaatacttggatattttcccaaatgtaagtagg
taagcacactggttcgttcacatccaagactgcttgctactcaacaatga
agaatgaactcagctttggtgggtgggcctcctgagaaaatgctgagtga
aattgtatcaaagaacactatggacaggaatctatttatataccagtggg
gtgaaagaactgattcactgacgagggtgagttgttctcagggactagga
gtaggagagagactgtggtcaccttaaaggggcagcctgagggagctgtg
aaggtgtctttgcagctccgggctaggcattagaaatgactgcacaggcc
aaatgaacactctcacttccaacaagcgatctttctgattcttggacagc
tcaccctgaagctcagttccattctaatgataactacctggagaagcttt
cagcttcaagcttttgttgtttttgttttgagacaagattctctgtgtag
cctgctgtccggaactccctctgtagacagctgactgaactaaaatcacc
tgtcctgc
gaattccctaggagatgaacttgagttcacctctcccgatgtgagtcaga
caccccaggggtgtgctacatcaaagctttgaagagttccaggatgcaga
ctttctgtaccttagtgtgcaccgtaggatggagctagggtggggcccct
ggctcaggatagactcagccacggacttcttgcgcaggcaggctccacag
tattttagtgcctcccatgccaactttaaccttgccctggccttcctctg
ggccaactgagagacttgtctagtgccagctgcacagtctcttccctcat
cagattctctccacagcccaggctgccacctctcttctttccctatggag
atgtagcccttctgtccaactgaagcccaaaagcaccttaaaggttatat
ttgcattgctgtgatccaatactcagcaagaagccactacagagaggacg
ggactgtttggctcatggtctgagggtccagtgtctcatggcagctcagg
cacagcaaaaggcacttgcaagcatctgggcagtaaggaaacagccagat
gaatgctcgtactctgcccaagcattggtacagtccacgttcaggaaagg
tctcttcctctccattccttttctctgggacaccctcgaaggaagacaca
gcgggagctgcctcactgtctcctaggcacttcttaatgcagtgaagtgg
acaatgaagacggaccctctcaactacttctcagaacccacatggaactt
tctctcccctctacactctttagtacctctgtgtatctttccagggaggg
aattcttctgtggtccttgtgataatatctatgttatcctcttgatcaat
caaacaaagggctgagtccccacccatcgcagggaacacacttgaactag
gtgtttagctagaaccttatgttcagtaggacaagaggtttctgaagaca
gggcctacatatgtttcaggcttggattggctctacttgatgtgggttgt
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58122232_58123356
seq2: B6Ng01-126D11.b_48_1155 (reverse)

seq1  GCAGAGACAGGTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGGGA  50
      |||| |||||||||||  | |||||   | ||||   |||||||||||||
seq2  GCAG-GACAGGTGATT--TTAGTTC--AGTCAGC--TGTCTACAGAGGGA  43

seq1  GTTCCCGGACAGCCAGGGCTACACAGAGAAATCTTGTCTCAAAAAACAAA  100
      ||| |||||||||   |||||||||||| |||||||||||  ||||||||
seq2  GTT-CCGGACAGC--AGGCTACACAGAG-AATCTTGTCTC--AAAACAAA  87

seq1  AACAAAACAAAAGGCCTTGAAGCTGAAAGCCTTCTCCAGGTAGTTATCAT  150
      |||  ||||||||  |||||||||||||| ||||||||||||||||||||
seq2  AAC--AACAAAAG--CTTGAAGCTGAAAG-CTTCTCCAGGTAGTTATCAT  132

seq1  TAGAATGGAACTGAGCTTCAGGGTGAGCTGTCCAAGAATCAG-AAGATCG  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGAATGGAACTGAGCTTCAGGGTGAGCTGTCCAAGAATCAGAAAGATCG  182

seq1  CTTGTTGGAAGTGAGAGTGTTCATTTGGCCTGTGCAGTCATTTCTAATGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGAAGTGAGAGTGTTCATTTGGCCTGTGCAGTCATTTCTAATGC  232

seq1  CTAGCCCGGAGCTGCAAAGACACCTTCACAGCTCCCTCAGGCTGCCCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCGGAGCTGCAAAGACACCTTCACAGCTCCCTCAGGCTGCCCCTT  282

seq1  TAAGGTGACCACAGTCTCTCTCCTACTCCTAGTCCCTGAGAACAACTCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGACCACAGTCTCTCTCCTACTCCTAGTCCCTGAGAACAACTCAC  332

seq1  CCTCGTCAGTGAATCAGTTCTTTCACCCCACTGGTATATAAATAGATTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCAGTGAATCAGTTCTTTCACCCCACTGGTATATAAATAGATTCC  382

seq1  TGTCCATAGTGTTCTTTGATACAATTTCACTCAGCATTTTCTCAGGAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATAGTGTTCTTTGATACAATTTCACTCAGCATTTTCTCAGGAGGC  432

seq1  CCACCCACCAAAGCTGAGTTCATTCTTCATTGTTGAGTAGCAAGCAGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCAAAGCTGAGTTCATTCTTCATTGTTGAGTAGCAAGCAGTCT  482

seq1  TGGATGTGAACGAACCAGTGTGCTTACCTACTTACATTTGGGAAAATATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGAACGAACCAGTGTGCTTACCTACTTACATTTGGGAAAATATC  532

seq1  CAAGTATTTTATTTATTGGGGGCTATTACAAATAAAGCTGCTGTGAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTTATTTATTGGGGGCTATTACAAATAAAGCTGCTGTGAACAT  582

seq1  TGTGTCCAGGTCCTACTGGGGAAATAAATGTCATTTTCTCTGGGATAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAGGTCCTACTGGGGAAATAAATGTCATTTTCTCTGGGATAAAT  632

seq1  GTGAGACACTGGAACTGCTGGGCCTTCTGGTAAATCCGTTTTTAGTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACACTGGAACTGCTGGGCCTTCTGGTAAATCCGTTTTTAGTTTTA  682

seq1  AAAAGAACCGGTTGTTTTGAAACTTGAGTCAAATGGAAGTATGACTAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCGGTTGTTTTGAAACTTGAGTCAAATGGAAGTATGACTAGAA  732

seq1  AGAGGAGAGGGGGCGTGACTAAGGACTGTCACGCACTGGAACAGTGCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGGGGCGTGACTAAGGACTGTCACGCACTGGAACAGTGCAGT  782

seq1  GCATGGGGGGATGGGGGGGGTGGTGGCAGCCAGCCACTCCAGAGGAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGGGATGGGGGGGGTGGTGGCAGCCAGCCACTCCAGAGGAAGCA  832

seq1  AGTGTGACTCAAGCTGCTGAGAAGTGAAAAAAATCCTCAAGACACTGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACTCAAGCTGCTGAGAAGTGAAAAAAATCCTCAAGACACTGTTA  882

seq1  GCTAGGGACATTGCCTCAGAGGGTATCAGGAGTCAGGCAGAGGACATGCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGACATTGCCTCAGAGGGTATCAGGAGTCAGGCAGAGGACATGCG  932

seq1  TGTGGGTGGAAAACCCTTTGATTATTTGCATATGTGAAAAGTCATTCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGAAAACCCTTTGATTATTTGCATATGTGAAAAGTCATTCTGA  982

seq1  GTCTGTTGAGAGCCACAGGAGAGCTGTCAGTTACATCGTAACAGGAAGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGAGAGCCACAGGAGAGCTGTCAGTTACATCGTAACAGGAAGGT  1032

seq1  TACTTTGTAGCAGGAAGAGGCAGGATTTACTAAAGCGGTCAGAGTTGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTAGCAGGAAGAGGCAGGATTTACTAAAGCGGTCAGAGTTGAGG  1082

seq1  TCAGAGGCAAGTTAGAAACGGAATTC  1125
      ||||||||||||||||||||||||||
seq2  TCAGAGGCAAGTTAGAAACGGAATTC  1108

seq1: chr9_57984337_57985341
seq2: B6Ng01-126D11.g_69_1070

seq1  GAATTCCCTAGGAGATGAACTTGAGTTCACCTCTCCCGATGTGAGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGGAGATGAACTTGAGTTCACCTCTCCCGATGTGAGTCAGA  50

seq1  CACCCCAGGGGTGTGCTACATCAAAGCTTTGAAGAGTTCCAGGATGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGGGGTGTGCTACATCAAAGCTTTGAAGAGTTCCAGGATGCAGA  100

seq1  CTTTCTGTACCTTAGTGTGCACCGTAGGATGGAGCTAGGGTGGGGCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTACCTTAGTGTGCACCGTAGGATGGAGCTAGGGTGGGGCCCCT  150

seq1  GGCTCAGGATAGACTCAGCCACGGACTTCTTGCGCAGGCAGGCTCCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGATAGACTCAGCCACGGACTTCTTGCGCAGGCAGGCTCCACAG  200

seq1  TATTTTAGTGCCTCCCATGCCAACTTTAACCTTGCCCTGGCCTTCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTGCCTCCCATGCCAACTTTAACCTTGCCCTGGCCTTCCTCTG  250

seq1  GGCCAACTGAGAGACTTGTCTAGTGCCAGCTGCACAGTCTCTTCCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACTGAGAGACTTGTCTAGTGCCAGCTGCACAGTCTCTTCCCTCAT  300

seq1  CAGATTCTCTCCACAGCCCAGGCTGCCACCTCTCTTCTTTCCCTATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTCTCCACAGCCCAGGCTGCCACCTCTCTTCTTTCCCTATGGAG  350

seq1  ATGTAGCCCTTCTGTCCAACTGAAGCCCAAAAGCACCTTAAAGGTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCTTCTGTCCAACTGAAGCCCAAAAGCACCTTAAAGGTTATAT  400

seq1  TTGCATTGCTGTGATCCAATACTCAGCAAGAAGCCACTACAGAGAGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGCTGTGATCCAATACTCAGCAAGAAGCCACTACAGAGAGGACG  450

seq1  GGACTGTTTGGCTCATGGTCTGAGGGTCCAGTGTCTCATGGCAGCTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTTGGCTCATGGTCTGAGGGTCCAGTGTCTCATGGCAGCTCAGG  500

seq1  CACAGCAAAAGGCACTTGCAAGCATCTGGGCAGTAAGGAAACAGCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAAAGGCACTTGCAAGCATCTGGGCAGTAAGGAAACAGCCAGAT  550

seq1  GAATGCTCGTACTCTGCCCAAGCATTGGTACAGTCCACGTTCAGGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCGTACTCTGCCCAAGCATTGGTACAGTCCACGTTCAGGAAAGG  600

seq1  TCTCTTCCTCTCCATTCCTTTTCTCTGGGACACCCTCGAAGGAAGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTCTCCATTCCTTTTCTCTGGGACACCCTCGAAGGAAGACACA  650

seq1  GCGGGAGCTGCCTCACTGTCTCCTAGGCACTTCTTAATGCAGTGAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGCTGCCTCACTGTCTCCTAGGCACTTCTTAATGCAGTGAAGTGG  700

seq1  ACAATGAAGACGGACCCTCTCAACTACTTCTCAGAACCCACATGGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGACGGACCCTCTCAACTACTTCTCAGAACCCACATGGAACTT  750

seq1  TCTCTCCCCTCTACACTCTTTAGTACCTCTGTGTATCTTTCCAGAGAGGG  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTCTCCCCTCTACACTCTTTAGTACCTCTGTGTATCTTTCCAGGGAGGG  800

seq1  AATTC-TCTGTGGTCCTTGTGATAATATCTATGTTATCCTC-TGATCAAT  848
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTCTTCTGTGGTCCTTGTGATAATATCTATGTTATCCTCTTGATCAAT  850

seq1  CATACAAA-GGCTGAGTCCCCACCCATCGCCAGGGAACACAC-TGAACTA  896
      || ||||| |||||||||||||||||||| |||||||||||| |||||||
seq2  CAAACAAAGGGCTGAGTCCCCACCCATCG-CAGGGAACACACTTGAACTA  899

seq1  GGTG-TTAGCTAGAAACCTTATGTTCAGTAAGGACAAGAGG-TTCTGAAG  944
      |||| |||||||| ||||||||||||||| ||||||||||| ||||||||
seq2  GGTGTTTAGCTAG-AACCTTATGTTCAGT-AGGACAAGAGGTTTCTGAAG  947

seq1  ACAGGGCCCTACATAAGGTTTCCAGGCTTGGAGTGGCTTCTAACTTGATG  994
      |||||| |||||||| |  || |||||||||| |||| ||| ||||||||
seq2  ACAGGG-CCTACATATG--TTTCAGGCTTGGATTGGC-TCT-ACTTGATG  992

seq1  TGGGTTTGTGA  1005
      |||| ||||||
seq2  TGGG-TTGTGA  1002