BAC Information

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BAC

Clone NameB6Ng01-126E08
Chromosome2 (Build37)9 (Build37)
Map Location 94,104,766 - 94,105,053107,610,894 - 107,611,837
singlet/doubletsingletsinglet
Overlap geneE530001K10Rik
Upstream geneTspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12
Downstream geneTtc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126E08.bB6Ng01-126E08.g
ACCDH928685DH928686
length675938
definitionDH928685|Mus musculus domesticus DNA, BAC clone: B6Ng01-126E08, 5' end.DH928686|Mus musculus domesticus DNA, BAC clone: B6Ng01-126E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,104,766 - 94,105,053)(107,610,894 - 107,611,837)
sequence
gaattcttttggcttacacttccatattcatagtccatcattaaaggagt
tcagggcaggaaccggaaagcaggagctcatggagaggccctgtttcctt
gcttgttcaacctgctttcttaaagaacccaggaccaccagcccaggggt
aaccccacccataagaggctgagccctcctaatgacaaattaagcaaatg
ccctaaggcttgcctgtagcagtatctcatggagtcactttctcaatgag
gctcccttttctttagcttatgccaaattgacataaaactagtgagcacg
actgactgctttttaacttgacatacacacactatcactgtttagccata
acctaaccttaccttccctttcctttttccttccctttttcccttccttt
cctctttccctttccctttctcccttcccccttcccccttctttcccctt
cttttcccttctttccccttctttctttccccttcttttctttccccttc
ttttcccttctttcccctttctccttctttcccctttccccttcttttcc
cttctttttcctttcccttcttttcccttttccctttttttcccttttcc
cttttcccttttttcccttttttcccttttcctctcctctcctctcctcc
cttcccctcccctctcccctacccc
gggaaacaggactccttctacctggcccagctccacggtggacacaggga
ggcttcagtctgtcctctccccagatgttaatggtctggtggcaaaatgc
acctatttcaagaatgaggagttataggtccggctgggaccccagcctta
gttccaaaggactcttcatcttgacactttccttacctcacctgctctag
acaacccgccaccccccatggtcccttgcccacttcaccactagggtccg
tggttcaaactggggcttgaccccaggctcttccaacttaacaacacctc
acttacaccgagacccctgaaccggagaaggaccgagaggcagctggggg
ccaggagatcggcaaatggctgaaagaaaagcccatttggaaacagatcc
ccttgtcttgcggttccgggcgaccctccacgtgggggcttccaatttag
accttcccctggggctgacctggtcttcagattagagacactgtggcagt
gcaaacgcgccgtttgggaaagagtgcaggcgtcagcagaggactaaaac
agaaggatccgaactcccactcaacgagggtaagggtacccacccaaaac
cttgcgggggtggaaaaagttaattcacacaccagtgatcccgcaggcca
catcacctagtcacacacacatctttacagcgcccgggaaccggggaggt
tcaaggacgccgggacaggtatgaagcacatcctagttctgtcgcctggt
acccgcagacagtgtgccacggttcgccagacctcgcgcacttctaagga
gttgcagttgcgcggatcctagtggggtcgggaggtcgtgttctctccgt
attcacctcgtcacggcggcgggcctgggcgcccaggcagcgtgtcgccg
cacagcgagaaggttcccgtccggcggtcgctttagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94104766_94105053
seq2: B6Ng01-126E08.b_680_723 (reverse)

seq1  GGGGTGGGAGAGGGGAGGGGATGAGGGTAATATAAATAAGGAAGCATTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGCACCACGCAAAGAGCTCCGGATTTCACGTCGTGTCTGCACTCTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCGGAGCAAAGCAAAACAGTTCTCCTTCAGTGCCAGACTTGTAGGGAGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGAAGAGAGCGGGAGGGGGAGAGAGGGAGGGGAGAGAGGGAGAGAAGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGAAAGGGTAGGGGAGATGCTGAAAAAGGGAGGGGAGGGAAGAAGGG  250
                                        ||| |||| ||| |||
seq2  ---------------------------------GGGGTAGGGGAGAGGGG  17

seq1  AGGGGGGAGAGAGAAGGAGGGAGGAGAGGGGAGGAGAG  288
      ||||           | |||||||||||| ||||||||
seq2  AGGG-----------GAAGGGAGGAGAGGAGAGGAGAG  44

seq1: chr9_107610894_107611837
seq2: B6Ng01-126E08.g_74_1011

seq1  GGGAAACAGGACTCCTTCTACCTGGCCCAGCTCCACGGTGGACACAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAGGACTCCTTCTACCTGGCCCAGCTCCACGGTGGACACAGGGA  50

seq1  GGCTTCAGTCTGTCCTCTCCCCAGATGTTAATGGTCTGGTGGCAAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGTCTGTCCTCTCCCCAGATGTTAATGGTCTGGTGGCAAAATGC  100

seq1  ACCTATTTCAAGAATGAGGAGTTATAGGTCCGGCTGGGACCCCAGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTCAAGAATGAGGAGTTATAGGTCCGGCTGGGACCCCAGCCTTA  150

seq1  GTTCCAAAGGACTCTTCATCTTGACACTTTCCTTACCTCACCTGCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAAGGACTCTTCATCTTGACACTTTCCTTACCTCACCTGCTCTAG  200

seq1  ACAACCCGCCACCCCCCATGGTCCCTTGCCCACTTCACCACTAGGGTCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCGCCACCCCCCATGGTCCCTTGCCCACTTCACCACTAGGGTCCG  250

seq1  TGGTTCAAACTGGGGCTTGACCCCAGGCTCTTCCAACTTAACAACACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAAACTGGGGCTTGACCCCAGGCTCTTCCAACTTAACAACACCTC  300

seq1  ACTTACACCGAGACCCCTGAACCGGAGAAGGACCGAGAGGCAGCTGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACCGAGACCCCTGAACCGGAGAAGGACCGAGAGGCAGCTGGGGG  350

seq1  CCAGGAGATCGGCAAATGGCTGAAAGAAAAGCCCATTTGGAAACAGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGATCGGCAAATGGCTGAAAGAAAAGCCCATTTGGAAACAGATCC  400

seq1  CCTTGTCTTGCGGTTCCGGGCGACCCTCCACGTGGGGGCTTCCAATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTTGCGGTTCCGGGCGACCCTCCACGTGGGGGCTTCCAATTTAG  450

seq1  ACCTTCCCCTGGGGCTGACCTGGTCTTCAGATTAGAGACACTGTGGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCCTGGGGCTGACCTGGTCTTCAGATTAGAGACACTGTGGCAGT  500

seq1  GCAAACGCGCCGTTTGGGAAAGAGTGCAGGCGTCAGCAGAGGACTAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACGCGCCGTTTGGGAAAGAGTGCAGGCGTCAGCAGAGGACTAAAAC  550

seq1  AGAAGGATCCGAACTCCCACTCAACGAGGGTAAGGGTACCCACCCAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATCCGAACTCCCACTCAACGAGGGTAAGGGTACCCACCCAAAAC  600

seq1  CTTGCGGGGGTGGAAAAAGTTAATTCACACACCAGTGATCCCGCAGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGGGGGTGGAAAAAGTTAATTCACACACCAGTGATCCCGCAGGCCA  650

seq1  CATCACCTAGTCACACACACATCTTTACAGCGCCCGGGAACCGGGGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTAGTCACACACACATCTTTACAGCGCCCGGGAACCGGGGAGGT  700

seq1  TC-AGGACGCCGGGACAGGTATGAAGCACATCCTAGTTCTGTCGCCTGGT  749
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACGCCGGGACAGGTATGAAGCACATCCTAGTTCTGTCGCCTGGT  750

seq1  ACCCGCAGACAGTGTGCCACGGTTCGCCAGACCTCGCGCACTTCTAAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCAGACAGTGTGCCACGGTTCGCCAGACCTCGCGCACTTCTAAGGA  800

seq1  GTTGCAGTGCCGCGGATCCTAGTGGGGTCGGGAGGTCGTGTTCTCTCCGT  849
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTTGCGCGGATCCTAGTGGGGTCGGGAGGTCGTGTTCTCTCCGT  850

seq1  ACTCACCTCGTCCACGGCGGCGGGGCCTGGGCGCCCGGGCAGCGGTGGCC  899
      | ||||||||| ||||||||| |||||||||||||| |||||||   | |
seq2  ATTCACCTCGT-CACGGCGGC-GGGCCTGGGCGCCCAGGCAGCG--TGTC  896

seq1  GCCGCAGCAGCGGAGAGGTTCGCGTCCGGCCGGTCCGCTTTAGCT  944
      |||||| |||||   |||||| ||||||| |||| ||||||||||
seq2  GCCGCA-CAGCGAGAAGGTTCCCGTCCGG-CGGT-CGCTTTAGCT  938