BAC Information

Click to search

BAC

Clone NameB6Ng01-126I14
Chromosome9 (Build37)
Map Location 68,746,347 - 68,862,588
singlet/doubletdoublet
Overlap geneRora
Upstream geneVps13c, LOC100041451, 9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126I14.bB6Ng01-126I14.g
ACCDH928882DH928883
length1,167510
definitionDH928882|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I14, 5' end.DH928883|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,746,347 - 68,747,537)(68,862,073 - 68,862,588)
sequence
gaattcccctcccccgcagtgaaaggcagacacaggtcaataacaacaac
cacagcctgcaaggcgctctgagatctaagcactctgagagcctttcaaa
gtaagggtttatggtgtgtccaggcaaagttgcacttgaatgagaacctt
catctggcttctgctaccaggtgaggccacgtctgaggctcctgtggcta
aagacagaccccagcttcttagctagtctcatcctttcccgagccagctt
gctaatggccaccagcgacttaggccagtgatgaggacatggcctctcat
tgctacagaccctgaaaggcgattgcccccaaattagactatattcaatg
tccaatagtagtaattaataacccagacatgtactggcttagggatgagg
ggacacacttcctctgctcccaatccagggtcctatgtgacagttccacc
tatttttacattgcatgggtcaccaggctaccctaacttcttagggccta
ggtctctgtacctcaagcgatctattacttgtgtttgtttgtttgtttgt
ttgtttgttttcctaacttcaataccatgaatcctggacaggttttggct
caaagcctcattttatgatgcttgcctctagagaactttttggtttaaat
aaaatatgtcagggtgaggcctctgacacaccttaatgtaggattcattt
tatcaaatgctgatacctatttccaagcaggagttttagattttgaaaac
agtcactaaatctttaagaggattcatttttctcattttggatcagatat
tgccaatgattctcagtgctaaacagtttaatttaattctttcacttaag
caggcacaagattttctacctaattttgaaaaatgagaaaacgaagatat
ttttctcctttggcttaaagttactactgatcatactgtttaaaatctaa
atctcttccttaagaactgtcaaagccaagagggaaattaaacttttttc
tctctgatctcacttataatgcaagggattcctcccccacccccaaagat
agctttttacttttaaatttcttgtgttgttaagagctaatgacttcatt
gcaccatctgtgtgcagtaccgagaagacaaaagagggcgtcgatcctgg
atctggaataaaggcag
caggtcaccactctctcctaggtagctgtgtcaaactgccctcaaaatgg
gccctttgtttaggaaggaaggaaaaataattcatggaggtggtcaactt
caagttcaaatcatatgcacagggggttttctctgggctcctgctgatga
atattgtgactttcattagcatcaaggggaccagcttgtgataggaagtg
ggcactttgactgtatgctgtgtacaaatatttgaccgccttcacccttc
tctttagaatttctctaacccagtggactctccattattcaaaggcaacc
tttgatattttttcactcctcctcccaaggttacctcctgtgggcaacag
catcccccttctctgtgaaggtcaaggcaacaggaaagacaaagagctca
gagcaactcagaactgtttgtctgctagaattctcagcttggagattgca
ccgatatgtatgtgtatatataggccaggaaaatgcttcagtgtgtgtgt
gtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68746347_68747537
seq2: B6Ng01-126I14.b_48_1214

seq1  GAATTCCCCTCCCCCGCAGTGAAAGGCAGACACAGGTCAATAACAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCCCCCGCAGTGAAAGGCAGACACAGGTCAATAACAACAAC  50

seq1  CACAGCCTGCAAGGCGCTCTGAGATCTAAGCACTCTGAGAGCCTTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGCAAGGCGCTCTGAGATCTAAGCACTCTGAGAGCCTTTCAAA  100

seq1  GTAAGGGTTTATGGTGTGTCCAGGCAAAGTTGCACTTGAATGAGAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTTTATGGTGTGTCCAGGCAAAGTTGCACTTGAATGAGAACCTT  150

seq1  CATCTGGCTTCTGCTACCAGGTGAGGCCACGTCTGAGGCTCCTGTGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTTCTGCTACCAGGTGAGGCCACGTCTGAGGCTCCTGTGGCTA  200

seq1  AAGACAGACCCCAGCTTCTTAGCTAGTCTCATCCTTTCCCGAGCCAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGACCCCAGCTTCTTAGCTAGTCTCATCCTTTCCCGAGCCAGCTT  250

seq1  GCTAATGGCCACCAGCGACTTAGGCCAGTGATGAGGACATGGCCTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGGCCACCAGCGACTTAGGCCAGTGATGAGGACATGGCCTCTCAT  300

seq1  TGCTACAGACCCTGAAAGGCGATTGCCCCCAAATTAGACTATATTCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGACCCTGAAAGGCGATTGCCCCCAAATTAGACTATATTCAATG  350

seq1  TCCAATAGTAGTAATTAATAACCCAGACATGTACTGGCTTAGGGATGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGTAGTAATTAATAACCCAGACATGTACTGGCTTAGGGATGAGG  400

seq1  GGACACACTTCCTCTGCTCCCAATCCAGGGTCCTATGTGACAGTTCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACTTCCTCTGCTCCCAATCCAGGGTCCTATGTGACAGTTCCACC  450

seq1  TATTTTTACATTGCATGGGTCACCAGGCTACCCTAACTTCTTAGGGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACATTGCATGGGTCACCAGGCTACCCTAACTTCTTAGGGCCTA  500

seq1  GGTCTCTGTACCTCAAGCGATCTATTACTTGTGTTTGTTTGTTTGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTACCTCAAGCGATCTATTACTTGTGTTTGTTTGTTTGTTTGT  550

seq1  TTGTTTGTTTTCCTAACTTCAATACCATGAATCCTGGACAGGTTTTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTCCTAACTTCAATACCATGAATCCTGGACAGGTTTTGGCT  600

seq1  CAAAGCCTCATTTTATGATGCTTGCCTCTAGAGAACTTTTTGGTTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTCATTTTATGATGCTTGCCTCTAGAGAACTTTTTGGTTTAAAT  650

seq1  AAAATATGTCAGGGTGAGGCCTCTGACACACCTTAATGTAGGATTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTCAGGGTGAGGCCTCTGACACACCTTAATGTAGGATTCATTT  700

seq1  TATCAAATGCTGATACCTATTTCCAAGCAGGAGTTTTAGATTTTGAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGCTGATACCTATTTCCAAGCAGGAGTTTTAGATTTTGAAAAC  750

seq1  AGTCACTAAATCTTTAAGAGGATTCATTTTTCTCATTTTGGATCAGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAAATCTTTAAGAGGATTCATTTTTCTCATTTTGGATCAGATAT  800

seq1  TGCCAATGATTCTCAGTGCTAAACAGTTTAATTTAATTCTTTCACTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATGATTCTCAGTGCTAAACAGTTTAATTTAATTCTTTCACTTAAG  850

seq1  CAGGCACAAGATTTTCTACCTAATTTTGAAAAATGAGAAAACGAAGGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGGCACAAGATTTTCTACCTAATTTTGAAAAATGAGAAAACGAA-GATA  899

seq1  TTTTTCTCC-TTCGCTTAAAGTTACTACTGATCATACTGTTTAAAATCTA  949
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCTTTGGCTTAAAGTTACTACTGATCATACTGTTTAAAATCTA  949

seq1  AATCTCTTCCTTAAGAACTGTCAAAGCCAAGAGGGAAATTAAAACTTTTT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATCTCTTCCTTAAGAACTGTCAAAGCCAAGAGGGAAATT-AAACTTTTT  998

seq1  TTCCTCCTCTTGATCTCACTTATAATGGCAAGGGATTCCTCCCCCACCCC  1049
      |  |||    |||||||||||||||| |||||||||||||||||||||||
seq2  TCTCTC----TGATCTCACTTATAAT-GCAAGGGATTCCTCCCCCACCCC  1043

seq1  CAAAAGATTAGCTTTTTACTTTTTAAAAATTTCTTTGTGTTTGTGTAAGA  1099
      | ||||| |||||||||||||||   ||||||| ||||| |||| |||||
seq2  C-AAAGA-TAGCTTTTTACTTTT---AAATTTC-TTGTG-TTGT-TAAGA  1085

seq1  GCCTACATGACTTCATTTGCACCATCTGTGTGCAGGTACCCGAAGAGACC  1149
      | ||| ||||||||| |||||||||||||||||| ||| ||||  ||| |
seq2  G-CTA-ATGACTTCA-TTGCACCATCTGTGTGCA-GTA-CCGAGAAGA-C  1129

seq1  AGAAGAGGGCGTCAGATCCCCTGGATCTGGAATTAGAGGCAG  1191
      | ||||||||||| |||  ||||||||||||| || ||||||
seq2  AAAAGAGGGCGTC-GAT--CCTGGATCTGGAA-TAAAGGCAG  1167

seq1: chr9_68862073_68862588
seq2: B6Ng01-126I14.g_69_584 (reverse)

seq1  ACACACACACACACACACACTGAAGCATTTTCCTGGCCTATATATACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACTGAAGCATTTTCCTGGCCTATATATACACA  50

seq1  TACATATCGGTGCAATCTCCAAGCTGAGAATTCTAGCAGACAAACAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCGGTGCAATCTCCAAGCTGAGAATTCTAGCAGACAAACAGTTC  100

seq1  TGAGTTGCTCTGAGCTCTTTGTCTTTCCTGTTGCCTTGACCTTCACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGCTCTGAGCTCTTTGTCTTTCCTGTTGCCTTGACCTTCACAGAG  150

seq1  AAGGGGGATGCTGTTGCCCACAGGAGGTAACCTTGGGAGGAGGAGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGATGCTGTTGCCCACAGGAGGTAACCTTGGGAGGAGGAGTGAAA  200

seq1  AAATATCAAAGGTTGCCTTTGAATAATGGAGAGTCCACTGGGTTAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAAGGTTGCCTTTGAATAATGGAGAGTCCACTGGGTTAGAGAA  250

seq1  ATTCTAAAGAGAAGGGTGAAGGCGGTCAAATATTTGTACACAGCATACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGAGAAGGGTGAAGGCGGTCAAATATTTGTACACAGCATACAG  300

seq1  TCAAAGTGCCCACTTCCTATCACAAGCTGGTCCCCTTGATGCTAATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGCCCACTTCCTATCACAAGCTGGTCCCCTTGATGCTAATGAAA  350

seq1  GTCACAATATTCATCAGCAGGAGCCCAGAGAAAACCCCCTGTGCATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATATTCATCAGCAGGAGCCCAGAGAAAACCCCCTGTGCATATGA  400

seq1  TTTGAACTTGAAGTTGACCACCTCCATGAATTATTTTTCCTTCCTTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTTGAAGTTGACCACCTCCATGAATTATTTTTCCTTCCTTCCTA  450

seq1  AACAAAGGGCCCATTTTGAGGGCAGTTTGACACAGCTACCTAGGAGAGAG  500
      ||||||||||||||                     |||||||||||||||
seq2  AACAAAGGGCCCATNNNNNNNNNNNNNNNNNNNNNCTACCTAGGAGAGAG  500

seq1  TGGTGACCTGGAATTC  516
      ||||||||||||||||
seq2  TGGTGACCTGGAATTC  516