BAC Information

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BAC

Clone NameB6Ng01-126J12
Chromosome9 (Build37)
Map Location 29,443,125 - 29,584,350
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126J12.bB6Ng01-126J12.g
ACCDH928923DH928924
length1,090985
definitionDH928923|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J12, 5' end.DH928924|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,583,256 - 29,584,350)(29,443,125 - 29,444,122)
sequence
gaattccaagaatgtcatgtgctcatgggtcctagcaacgcaagtagctg
atgcttgacctgaagtgttaagtgtttgtgtgtcaggcaagtgttaccaa
gataactaactgttcatgtcttccctttcatccttaggctgcctcaggct
gaaaggctaaaatgaaaagaacaataataacaataacgaaggaagcaaac
aaaagcccaggcagggctgtaaagcaaatgtagtgattgttgaaacagat
tcaaggattttggggaacattttgttatgtgaggatgtgtgaaccctttc
attgtttcttgtctttcttttctcttccaaacaagcttccacaatgcagt
ccaggctggccttgaacttgctaccatgcctagcttagtgtgaaccattt
tttttttccaaataaaaaaaaatcagattcgaaatacattataattgaag
ggctcactatgaaatgtatgccaggctgttgaagaaggaaaagcaagcaa
gaataaaggctggctttcactttttggctgagtcagcacttattccgctg
agtcagattttctttgcttctatagtttctttccttatatagtttcagcc
tgctacaccaaggtctgacttaaagtgtttcttctcatcctctttaggaa
aacacacagccgttccaaacaatattccagctggttcacaaacaaacgaa
caaaaccaacaataacaaaacccctcatcacctgtgaggaagatgcaggg
ctttgcaggtacactcaccgtctgggctcccactcaccctacagacacaa
aaaagaaaaatgcttaactatggcctccctccagtatttctcaaaacttc
tctatcagtttttgtttgtttaacacttcctgataaagagtctgttttgc
tcccccatgtattttatttaggaacgtggtgtcccaagaagagtcttcca
ctcacacaagttagggcctctgttacaggctgaagaaataatttcattca
agtcgagtttgttgaacagaatgttggggttgctgaaagaagtgtgggtg
ccccttggctgctgcttgaagacaagtcacgtagcacttg
gaattccatgatgtcttccgcatcactaactttgcctttgtaaagagaag
gaatgaagtgtattacagaaggagggtctgacacatcgggggactcaaag
gctggatcgacccccggtgaagccgaaatggggaacctggtgtcagagac
tgagttcctgaagaaactctcctaatatctgggctgatggagagaaaggg
ctaagctctgtctcgggaagaaggttaagtattcaaaggaaggcagctgg
aagcacgttaggagagcaaagctctgcccacagacagacagctttatggt
tgcgtgtcgggtgcactaggttctgcctgccatccaccttgtccgtctca
accctttccatgggttgcctggcctcctgtctaaaaacagccctgaattt
gtttgaaacttcatctccttcagccctaatgacacaccattaaattaaga
aataaaaagacacttaacattgacaggctgaaagtgtatttgctgtaagg
aggatggaggagcagggaaatacaccttttttttatcagaaatgtactga
acctgggaatggagttcaaatatacataagccataatttatatcctgact
gcatagttctctcttaaaaagataaaaagacagcaccaaatgccagacct
cgagctgacagaatacaatgcctgtccatgattctgagtcctgcagttcc
aagccagtaagtctgagaggtgccatccacaatgtccagatgctgcactg
gcaactaattattttctccttagaagtagatagagggagatgaaatgcat
tgctttatccaacatttttttaaaaattacacacacacacacacacaaaa
aagacccgagggggaggggtggagctggtgaaagactcaggtgtaaacga
tggaagctaagcctgactccagcctgaaactcagtgtaatgtctgatggt
atgcctgagcttgtagtacctcgccagggagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29583256_29584350
seq2: B6Ng01-126J12.b_49_1138 (reverse)

seq1  CAAGTGCTACGGTGGACTTGTCCTCAAGGCAGCAGGCCAAGGGGCACCCA  50
      |||||||||||   |||||||| |||| |||||| |||||||||||||||
seq2  CAAGTGCTACG--TGACTTGTCTTCAA-GCAGCA-GCCAAGGGGCACCCA  46

seq1  CACTTCTGTCAGCAACCCCAACATTCTGGTTCAACAAACTCGACTTGAAT  100
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CACTTCTTTCAGCAACCCCAACATTCT-GTTCAACAAACTCGACTTGAAT  95

seq1  GAAATTATGTCTTCAGCCTGTAACAGAGGCCCTAACTTGTGTGAGTGGAA  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTTCTTCAGCCTGTAACAGAGGCCCTAACTTGTGTGAGTGGAA  145

seq1  GACTCTTCTTGGGACACCACGTTCCTAAATAAAATACATGGGGGAGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTTGGGACACCACGTTCCTAAATAAAATACATGGGGGAGCAAA  195

seq1  ACAGACTCTTTATCAGGAAGTGTTAAACAAACAAAAACTGATAGAGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCTTTATCAGGAAGTGTTAAACAAACAAAAACTGATAGAGAAGT  245

seq1  TTTGAGAAATACTGGAGGGAGGCCATAGTTAAGCATTTTTCTTTTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAATACTGGAGGGAGGCCATAGTTAAGCATTTTTCTTTTTTGTG  295

seq1  TCTGTAGGGTGAGTGGGAGCCCAGACGGTGAGTGTACCTGCAAAGCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGGTGAGTGGGAGCCCAGACGGTGAGTGTACCTGCAAAGCCCTG  345

seq1  CATCTTCCTCACAGGTGATGAGGGGTTTTGTTATTGTTGGTTTTGTTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTCACAGGTGATGAGGGGTTTTGTTATTGTTGGTTTTGTTCGT  395

seq1  TTGTTTGTGAACCAGCTGGAATATTGTTTGGAACGGCTGTGTGTTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTGAACCAGCTGGAATATTGTTTGGAACGGCTGTGTGTTTTCCT  445

seq1  AAAGAGGATGAGAAGAAACACTTTAAGTCAGACCTTGGTGTAGCAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGATGAGAAGAAACACTTTAAGTCAGACCTTGGTGTAGCAGGCTG  495

seq1  AAACTATATAAGGAAAGAAACTATAGAAGCAAAGAAAATCTGACTCAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATATAAGGAAAGAAACTATAGAAGCAAAGAAAATCTGACTCAGCG  545

seq1  GAATAAGTGCTGACTCAGCCAAAAAGTGAAAGCCAGCCTTTATTCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTGCTGACTCAGCCAAAAAGTGAAAGCCAGCCTTTATTCTTGCT  595

seq1  TGCTTTTCCTTCTTCAACAGCCTGGCATACATTTCATAGTGAGCCCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCTTCTTCAACAGCCTGGCATACATTTCATAGTGAGCCCTTCA  645

seq1  ATTATAATGTATTTCGAATCTGATTTTTTTTTATTTGGAAAAAAAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATGTATTTCGAATCTGATTTTTTTTTATTTGGAAAAAAAAAATG  695

seq1  GTTCACACTAAGCTAGGCATGGTAGCAAGTTCAAGGCCAGCCTGGACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACTAAGCTAGGCATGGTAGCAAGTTCAAGGCCAGCCTGGACTGC  745

seq1  ATTGTGGAAGCTTGTTTGGAAGAGAAAAGAAAGACAAGAAACAATGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAAGCTTGTTTGGAAGAGAAAAGAAAGACAAGAAACAATGAAAG  795

seq1  GGTTCACACATCCTCACATAACAAAATGTTCCCCAAAATCCTTGAATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACACATCCTCACATAACAAAATGTTCCCCAAAATCCTTGAATCTG  845

seq1  TTTCAACAATCACTACATTTGCTTTACAGCCCTGCCTGGGCTTTTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAATCACTACATTTGCTTTACAGCCCTGCCTGGGCTTTTGTTTG  895

seq1  CTTCCTTCGTTATTGTTATTATTGTTCTTTTCATTTTAGCCTTTCAGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCGTTATTGTTATTATTGTTCTTTTCATTTTAGCCTTTCAGCCT  945

seq1  GAGGCAGCCTAAGGATGAAAGGGAAGACATGAACAGTTAGTTATCTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCCTAAGGATGAAAGGGAAGACATGAACAGTTAGTTATCTTGGT  995

seq1  AACACTTGCCTGACACACAAACACTTAACACTTCAGGTCAAGCATCAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGCCTGACACACAAACACTTAACACTTCAGGTCAAGCATCAGCT  1045

seq1  ACTTGCGTTGCTAGGACCCATGAGCACATGACATTCTTGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCGTTGCTAGGACCCATGAGCACATGACATTCTTGGAATTC  1090

seq1: chr9_29443125_29444122
seq2: B6Ng01-126J12.g_70_1054

seq1  GAATTCCATGATGTCTTCCGCATCACTAACTTTGCCTTTGTAAAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATGTCTTCCGCATCACTAACTTTGCCTTTGTAAAGAGAAG  50

seq1  GAATGAAGTGTATTACAGAAGGAGGGTCTGACACATCGGGGGACTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGTGTATTACAGAAGGAGGGTCTGACACATCGGGGGACTCAAAG  100

seq1  GCTGGATCGACCCCCGGTGAAGCCGAAATGGGGAACCTGGTGTCAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCGACCCCCGGTGAAGCCGAAATGGGGAACCTGGTGTCAGAGAC  150

seq1  TGAGTTCCTGAAGAAACTCTCCTAATATCTGGGCTGATGGAGAGAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCTGAAGAAACTCTCCTAATATCTGGGCTGATGGAGAGAAAGGG  200

seq1  CTAAGCTCTGTCTCGGGAAGAAGGTTAAGTATTCAAAGGAAGGCAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCTGTCTCGGGAAGAAGGTTAAGTATTCAAAGGAAGGCAGCTGG  250

seq1  AAGCACGTTAGGAGAGCAAAGCTCTGCCCACAGACAGACAGCTTTATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGTTAGGAGAGCAAAGCTCTGCCCACAGACAGACAGCTTTATGGT  300

seq1  TGCGTGTCGGGTGCACTAGGTTCTGCCTGCCATCCACCTTGTCCGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTCGGGTGCACTAGGTTCTGCCTGCCATCCACCTTGTCCGTCTCA  350

seq1  ACCCTTTCCATGGGTTGCCTGGCCTCCTGTCTAAAAACAGCCCTGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCCATGGGTTGCCTGGCCTCCTGTCTAAAAACAGCCCTGAATTT  400

seq1  GTTTGAAACTTCATCTCCTTCAGCCCTAATGACACACCATTAAATTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAACTTCATCTCCTTCAGCCCTAATGACACACCATTAAATTAAGA  450

seq1  AATAAAAAGACACTTAACATTGACAGGCTGAAAGTGTATTTGCTGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGACACTTAACATTGACAGGCTGAAAGTGTATTTGCTGTAAGG  500

seq1  AGGATGGAGGAGCAGGGAAATACACCTTTTTTTTATCAGAAATGTACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAGGAGCAGGGAAATACACCTTTTTTTTATCAGAAATGTACTGA  550

seq1  ACCTGGGAATGGAGTTCAAATATACATAAGCCATAATTTATATCCTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAATGGAGTTCAAATATACATAAGCCATAATTTATATCCTGACT  600

seq1  GCATAGTTCTCTCTTAAAAAGATAAAAAGACAGCACCAAATGCCAGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTTCTCTCTTAAAAAGATAAAAAGACAGCACCAAATGCCAGACCT  650

seq1  CGAGCTGACAGAATACAATGCCTGTCCATGATTCTGAGTCCTGCAGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGACAGAATACAATGCCTGTCCATGATTCTGAGTCCTGCAGTTCC  700

seq1  AAGCCAGTAAGTCTGAGAGGTGCCATCCACAATGTCCAGATGCTGCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTAAGTCTGAGAGGTGCCATCCACAATGTCCAGATGCTGCACTG  750

seq1  GCAACTAATTATTTTCTCCTTAGAAGTAGATAGAGGGAGATGAAATGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAATTATTTTCTCCTTAGAAGTAGATAGAGGGAGATGAAATGCAT  800

seq1  TGCTTTATCCAACATTTTTTTAAAAATTACACACACACACACACAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCTTTATCCAACATTTTTTTAAAAATTACACACACACACACACACAAAA  850

seq1  AAAGAACCCGAGGGGGAGGGGTGGAGCTGGTGAGAGAACTCAGGTGGGAA  900
      ||   |||||||||||||||||||||||||||| || ||||||||  | |
seq2  AA--GACCCGAGGGGGAGGGGTGGAGCTGGTGAAAG-ACTCAGGT--GTA  895

seq1  AACGATGGAAGCATAAAGGCCTGACTCCAAGCCTGAAACTCATGTGAAAA  950
      |||||||||||| |||  |||||||||| ||||||||||||| |||  ||
seq2  AACGATGGAAGC-TAA--GCCTGACTCC-AGCCTGAAACTCA-GTG-TAA  939

seq1  TGTCTGATGTGATGACATGAGCTTGTAGTACCAGCGCCAGGGAGCTGG  998
      |||||||||  ||| | |||||||||||||||  ||||||||||||||
seq2  TGTCTGATGGTATG-CCTGAGCTTGTAGTACC-TCGCCAGGGAGCTGG  985