BAC Information

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BAC

Clone NameB6Ng01-126L18
Chromosome9 (Build37)
Map Location 60,717,152 - 60,902,214
singlet/doubletdoublet
Overlap geneUaca, A430102L10
Upstream geneMyo9a, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, ENSMUSG00000052143
Downstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126L18.bB6Ng01-126L18.g
ACCDH929026DH929027
length5881,023
definitionDH929026|Mus musculus domesticus DNA, BAC clone: B6Ng01-126L18, 5' end.DH929027|Mus musculus domesticus DNA, BAC clone: B6Ng01-126L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,901,622 - 60,902,214)(60,717,152 - 60,718,175)
sequence
agttgtcgtcccctccactccccccccccccccccgcactccctcagaga
aacattatgctcctagattgtgggccctccctcctagactgttctgtttc
ctccatcttctccacattctctccttggagcatctgctgtacctcgggag
gaaatgtctcatctctcatacctactgtgtgaatggatatggggtcttca
ccatgggctctggggtcagataccagaagttctaaactccagccccaccg
agagtcagcctactgtccctggggcacctgggctaacctggagcacctgg
gctgaccagggtaatgctctaactcctttcagtgttgtggacccaaaggt
agtcaccacctcctagggccactcagaggactgaatgcaaaggggcatag
cactgagcactggcactgttcatataaatacaaactatagtcacaaagat
cctcagggtggaatagacaggggttgatctctctctctctctctctctct
ctctctctctctctctccccttcctccccctcccctccctcctctctccc
tccttcttctctccctccccttcccctcccccttccta
gaattcccaagatgttttaagtgtaataaggaaatcctacccagaactgt
ttttctaaaccaaaatcgattctttattttgctcctcccatctctcccct
cttcctaatctgaaaaccttttgattactgatgatgtagatactgtgtag
agccctctataaaatagaagtcaccacagtgacgttaggttctgcggtta
atggtttttgtttgtttgtttgtttggcagtgtgcatcaccgggtatacc
tccccatatgcatagcaggtctatgctaaggcctctggagttgtctttac
ccagtcagacctcatactctgaaaatgagattttaaagaaagaattggaa
accttgcgaacttactatgactcggcaaaacaggaccgactgaagttcca
aaacgaactggctcacaaggtggcggagtgcaaagccttagctctggagt
gcgagagagtcaaggaagactcggacgaacagatcaagcagctggaagat
gccctcaaagacgtgcagaagaggatgtatgagtccgaagggaaagtcaa
acaaatgcagacccacttcctcgccctcaaagagcacctgaccaacgaag
cggccacagggagccaccgcatcatcgaggaactgagggagcagctgaaa
gacctgaaaggcaaatatgaaggcgcttcggccgaggtaggcaagctgcg
gagccagatcaaacagagcgagatgctggtggggagagttcaagagagac
gagggcaggctggtggaagagaataagcgattgcagaggaatgcggcaca
tgtgaagtcgagctggagaaggagggggcgacgggtcgtggaactggagg
gccagctgaaggagctgggggctaagctggccctttctgtccccacagag
aaatttggaaagcatggagagctcatatccaatgacatcattgagaaagt
agaaaggctgcggaggtggggcgggattatgaaagcctcagggggaattt
cgactgcgtaaaagggacctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60901622_60902214
seq2: B6Ng01-126L18.b_50_642 (reverse)

seq1  AGGAAGGGGGAGGGGAAGGGGAGGGAGAGAAGAAGGAGGGAGAGAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGGGAGGGGAAGGGGAGGGAGAGAAGAAGGAGGGAGAGAGGAGG  50

seq1  GAGGGGAGGGGGAGGAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GAGGGGAGGGGGAGGAAGGG--GAGAGAGAGAGAGAGAGAGAGAGAGAGA  98

seq1  GAGAGAGAGAGATCAACCCCTGTCTATTCCACCCTGAGGATCTTTGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGATCAACCCCTGTCTATTCCACCCTGAGGATCTTTGTGAC  148

seq1  TATAGTTTGTATTTATATGAACAGTGCCAGTGCTCAGTGCTATGCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTGTATTTATATGAACAGTGCCAGTGCTCAGTGCTATGCCCCTT  198

seq1  TGCATTCAGTCCTCTGAGTGGCCCTAGGAGGTGGTGACTACCTTTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCAGTCCTCTGAGTGGCCCTAGGAGGTGGTGACTACCTTTGGGTC  248

seq1  CACAACACTGAAAGGAGTTAGAGCATTACCCTGGTCAGCCCAGGTGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTGAAAGGAGTTAGAGCATTACCCTGGTCAGCCCAGGTGCTCC  298

seq1  AGGTTAGCCCAGGTGCCCCAGGGACAGTAGGCTGACTCTCGGTGGGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCCCAGGTGCCCCAGGGACAGTAGGCTGACTCTCGGTGGGGCTG  348

seq1  GAGTTTAGAACTTCTGGTATCTGACCCCAGAGCCCATGGTGAAGACCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGAACTTCTGGTATCTGACCCCAGAGCCCATGGTGAAGACCCCA  398

seq1  TATCCATTCACACAGTAGGTATGAGAGATGAGACATTTCCTCCCGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTCACACAGTAGGTATGAGAGATGAGACATTTCCTCCCGAGGTA  448

seq1  CAGCAGATGCTCCAAGGAGAGAATGTGGAGAAGATGGAGGAAACAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATGCTCCAAGGAGAGAATGTGGAGAAGATGGAGGAAACAGAACA  498

seq1  GTCTAGGAGGGAGGGCCCACAATCTAGGAGCATAATGTTTCTCTGAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGAGGGAGGGCCCACAATCTAGGAGCATAATGTTTCTCTGAGGGA  548

seq1  GTGC--GGGGGGGGGGGGGGAGTGGAGGGGACGACAACTGAATTC  593
      ||||  |||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGGGGGGGGGGGGGGGAGTGGAGGGGACGACAACTGAATTC  593

seq1: chr9_60717152_60718175
seq2: B6Ng01-126L18.g_69_1091

seq1  GAATTCCCAAGATGTTTTAAGTGTAATAAGGAAATCCTACCCAGAACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGATGTTTTAAGTGTAATAAGGAAATCCTACCCAGAACTGT  50

seq1  TTTTCTAAACCAAAATCGATTCTTTATTTTGCTCCTCCCATCTCTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAACCAAAATCGATTCTTTATTTTGCTCCTCCCATCTCTCCCCT  100

seq1  CTTCCTAATCTGAAAACCTTTTGATTACTGATGATGTAGATACTGTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAATCTGAAAACCTTTTGATTACTGATGATGTAGATACTGTGTAG  150

seq1  AGCCCTCTATAAAATAGAAGTCACCACAGTGACGTTAGGTTCTGCGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTATAAAATAGAAGTCACCACAGTGACGTTAGGTTCTGCGGTTA  200

seq1  ATGGTTTTTGTTTGTTTGTTTGTTTGGCAGTGTGCATCACCGGGTATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTGTTTGTTTGTTTGTTTGGCAGTGTGCATCACCGGGTATACC  250

seq1  TCCCCATATGCATAGCAGGTCTATGCTAAGGCCTCTGGAGTTGTCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATATGCATAGCAGGTCTATGCTAAGGCCTCTGGAGTTGTCTTTAC  300

seq1  CCAGTCAGACCTCATACTCTGAAAATGAGATTTTAAAGAAAGAATTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGACCTCATACTCTGAAAATGAGATTTTAAAGAAAGAATTGGAA  350

seq1  ACCTTGCGAACTTACTATGACTCGGCAAAACAGGACCGACTGAAGTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCGAACTTACTATGACTCGGCAAAACAGGACCGACTGAAGTTCCA  400

seq1  AAACGAACTGGCTCACAAGGTGGCGGAGTGCAAAGCCTTAGCTCTGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAACTGGCTCACAAGGTGGCGGAGTGCAAAGCCTTAGCTCTGGAGT  450

seq1  GCGAGAGAGTCAAGGAAGACTCGGACGAACAGATCAAGCAGCTGGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGAGTCAAGGAAGACTCGGACGAACAGATCAAGCAGCTGGAAGAT  500

seq1  GCCCTCAAAGACGTGCAGAAGAGGATGTATGAGTCCGAAGGGAAAGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAAAGACGTGCAGAAGAGGATGTATGAGTCCGAAGGGAAAGTCAA  550

seq1  ACAAATGCAGACCCACTTCCTCGCCCTCAAAGAGCACCTGACCAACGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCAGACCCACTTCCTCGCCCTCAAAGAGCACCTGACCAACGAAG  600

seq1  CGGCCACAGGGAGCCACCGCATCATCGAGGAACTGAGGGAGCAGCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACAGGGAGCCACCGCATCATCGAGGAACTGAGGGAGCAGCTGAAA  650

seq1  GACCTGAAAGGCAAATATGAAGGCGCTTCGGCCGAGGTAGGCAAGCTGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAAAGGCAAATATGAAGGCGCTTCGGCCGAGGTAGGCAAGCTGCG  700

seq1  GAGCCAGATCAAACAGAGCGAGATGCTGGT-GGGAGAGTTCAAGAGAGAC  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGCCAGATCAAACAGAGCGAGATGCTGGTGGGGAGAGTTCAAGAGAGAC  750

seq1  GAGGGCAGGCTGGTGGAAGAGAATAAGCGATTGCAGAAGGAATGCGGCAC  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGGCAGGCTGGTGGAAGAGAATAAGCGATTGCAG-AGGAATGCGGCAC  799

seq1  ATGTGAAGTCGAGCTGGAG-AGGAGGGGGCGACGGGTCGTGGAACTGGAG  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGTGAAGTCGAGCTGGAGAAGGAGGGGGCGACGGGTCGTGGAACTGGAG  849

seq1  GGCCAGCTGAAGGAGCTGGGGGCTAAGCTGGCCCTTTCTGTCCCCACAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTGAAGGAGCTGGGGGCTAAGCTGGCCCTTTCTGTCCCCACAGA  899

seq1  GAAATTT-GAAAGCATGAAGAGCTCATTATCCAATGACATCAATGAGAAA  947
      ||||||| ||||||||| |||||||| ||||||||||||||| |||||||
seq2  GAAATTTGGAAAGCATGGAGAGCTCA-TATCCAATGACATCATTGAGAAA  948

seq1  GTGAAAAGGCTGGCGGAGGTGGGGCGGGACTATGAAAGCGCTCAGGGGGA  997
      ||  ||||||| ||||||||||||||||| ||||||||| ||||||||||
seq2  GTAGAAAGGCT-GCGGAGGTGGGGCGGGATTATGAAAGC-CTCAGGGGGA  996

seq1  AATTCGACAGCTGAAGAGGGACCTAGA  1024
      | |||||| ||  || |||||||||||
seq2  ATTTCGACTGCGTAAAAGGGACCTAGA  1023