BAC Information

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BAC

Clone NameB6Ng01-126M20
Chromosome9 (Build37)
Map Location 28,295,649 - 28,483,714
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126M20.bB6Ng01-126M20.g
ACCDH929078DH929079
length1,0411,018
definitionDH929078|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M20, 5' end.DH929079|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,482,678 - 28,483,714)(28,295,649 - 28,296,685)
sequence
gaattctgtttgaatgttgactcttaccataatagcacagtgctttaaac
agtggtggtgattgggatagtttaaaataagtttattttcattgcttgcc
ttgccttaacatggccttcatattacagctctgcagacatttttaactca
tcatattgtatctggcatggggctaaactgagtcagatttttagaagaat
agagacaatgatgttgaagtactccctctgctcctttcaacaatatgact
ttacttctgacctggaggtatcattctgataagctctctcttggctctac
tctgggactggtgcagaaaggatgcgtcattagacaagtaaagaaatgcc
agagaggacctaactggctagaactcagtgtcatttctaaaacacacata
gccagtttcacattaatattagcccattttttactttgttttgtattaat
gaaacaagccttagagaaataaaggcctctgtgattaatactgcatttat
ctatgtttgaatcttccaccagcttcaaatgctaagtttcttaagaaagt
tcagccatatatgaacaaaagcctcctggtgagaacaaagtgctagagaa
aaaaaactgaaaaacttctagaagaagctttgaaatgctcaacctgtgga
tttaatagagggaagtgagcttttatgtctttatacataaacacaaagaa
aaagattgcatttccagtccccttccacaaagagcgtcagccacaggtcc
agctgtaacttaccttgcactatgagatggacccgggaggttttggggtg
attgtctgtctgcacagagcaggtgtatggaccttcatcgtatacatcca
cattctggatcatgatactgtattgggtaggcgtgttgaccaaaatgatc
actcgagggtctatggaccacttgtcattcccagcatagaggattgtgct
gcggtttagccaggctacccgggtgacccgatcatctatggtacacctgt
gaggatgggaggagaagcaaggagaagggggaggaaggaat
gaattcacatctgcataagctccaggctgctgcataacacccaggagacc
ctattggtcaatgagagcagtgagcaccctctctctcacacttgtcactg
ccatcatcacatctccatttctgcctctctccatagcacacacaccactt
tctttgtctatttttcccacctctccatcacatatttgttcaatgtagtg
gtgcccacagaccctcatagtgagatagagaaaaagatttttctccgtgg
cagaatgtgggcatctttctctgtaggacttgactttcatgttctcggga
aagagtgaccaaagcaattgttgcttctcaggtgcttttagtataaaata
atcgatgtgcttaagcggcatattttgaggtgacagatcctgaactccct
cagttgtctatacacctttgttcatctctctttccattcaggattctcag
aacaaaggagagttgggccttgcctgcagctgactgtagttcaggaggga
cctagttgagtgtggaagggaagaagacaggaggctttttgagtctccgt
tttcatgagtaaaatgaggaaataacagtatgcactcaggatctgaggac
aacagggggttttaagcagagttctgagcagagtgctcagaatagcaact
acgttatgtacatttatatgcttttctttttgtgttatgaattaatttcc
catgtgctgttaattagatgcagggaagaaattctctagaagtgatgcct
gccttgaatttcagcattgtggaaagcaaggcaggtaaagacctactgag
gttccttgttcctacctccactggaccctccagcagagcctctcggatgg
cagtacaggtccttgcaaacctgaggtattttgtcttctttcagttcctc
agtccttgacatgtagatagaaggcaagaaataatcatgtgaataaattg
tgaaaatagtttaatgagaaatgctttgggattatgtgttaataaattga
cggtgagctacattaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28482678_28483714
seq2: B6Ng01-126M20.b_48_1088 (reverse)

seq1  ATTCC-TCCTCCCC--TCTCCTTGC-TCTCCTCCCATCCTCACAGGTGTA  46
      ||||| ||||||||  ||||||||| ||||||||||||||||||||||||
seq2  ATTCCTTCCTCCCCCTTCTCCTTGCTTCTCCTCCCATCCTCACAGGTGTA  50

seq1  CCATAGATGATCGGGTCACCCGGGTAGCCTGGCTAAACCGCAGCACAATC  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATGATCGGGTCACCCGGGTAGCCTGGCTAAACCGCAGCACAATC  100

seq1  CTCTATGCTGGGAATGACAAGTGGTCCATAGACCCTCGAGTGATCATTTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCTGGGAATGACAAGTGGTCCATAGACCCTCGAGTGATCATTTT  150

seq1  GGTCAACACGCCTACCCAATACAGTATCATGATCCAGAATGTGGATGTAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACACGCCTACCCAATACAGTATCATGATCCAGAATGTGGATGTAT  200

seq1  ACGATGAAGGTCCATACACCTGCTCTGTGCAGACAGACAATCACCCCAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGAAGGTCCATACACCTGCTCTGTGCAGACAGACAATCACCCCAAA  250

seq1  ACCTCCCGGGTCCATCTCATAGTGCAAGGTAAGTTACAGCTGGACCTGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCGGGTCCATCTCATAGTGCAAGGTAAGTTACAGCTGGACCTGTG  300

seq1  GCTGACGCTCTTTGTGGAAGGGGACTGGAAATGCAATCTTTTTCTTTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACGCTCTTTGTGGAAGGGGACTGGAAATGCAATCTTTTTCTTTGTG  350

seq1  TTTATGTATAAAGACATAAAAGCTCACTTCCCTCTATTAAATCCACAGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATAAAGACATAAAAGCTCACTTCCCTCTATTAAATCCACAGGT  400

seq1  TGAGCATTTCAAAGCTTCTTCTAGAAGTTTTTCAGTTTTTTTTCTCTAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTCAAAGCTTCTTCTAGAAGTTTTTCAGTTTTTTTTCTCTAGC  450

seq1  ACTTTGTTCTCACCAGGAGGCTTTTGTTCATATATGGCTGAACTTTCTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTCTCACCAGGAGGCTTTTGTTCATATATGGCTGAACTTTCTTA  500

seq1  AGAAACTTAGCATTTGAAGCTGGTGGAAGATTCAAACATAGATAAATGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTAGCATTTGAAGCTGGTGGAAGATTCAAACATAGATAAATGCA  550

seq1  GTATTAATCACAGAGGCCTTTATTTCTCTAAGGCTTGTTTCATTAATACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATCACAGAGGCCTTTATTTCTCTAAGGCTTGTTTCATTAATACA  600

seq1  AAACAAAGTAAAAAATGGGCTAATATTAATGTGAAACTGGCTATGTGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTAAAAAATGGGCTAATATTAATGTGAAACTGGCTATGTGTGT  650

seq1  TTTAGAAATGACACTGAGTTCTAGCCAGTTAGGTCCTCTCTGGCATTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATGACACTGAGTTCTAGCCAGTTAGGTCCTCTCTGGCATTTCT  700

seq1  TTACTTGTCTAATGACGCATCCTTTCTGCACCAGTCCCAGAGTAGAGCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTCTAATGACGCATCCTTTCTGCACCAGTCCCAGAGTAGAGCCA  750

seq1  AGAGAGAGCTTATCAGAATGATACCTCCAGGTCAGAAGTAAAGTCATATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCTTATCAGAATGATACCTCCAGGTCAGAAGTAAAGTCATATT  800

seq1  GTTGAAAGGAGCAGAGGGAGTACTTCAACATCATTGTCTCTATTCTTCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGGAGCAGAGGGAGTACTTCAACATCATTGTCTCTATTCTTCTA  850

seq1  AAAATCTGACTCAGTTTAGCCCCATGCCAGATACAATATGATGAGTTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGACTCAGTTTAGCCCCATGCCAGATACAATATGATGAGTTAAA  900

seq1  AATGTCTGCAGAGCTGTAATATGAAGGCCATGTTAAGGCAAGGCAAGCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCAGAGCTGTAATATGAAGGCCATGTTAAGGCAAGGCAAGCAA  950

seq1  TGAAAATAAACTTATTTTAAACTATCCCAATCACCACCACTGTTTAAAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAACTTATTTTAAACTATCCCAATCACCACCACTGTTTAAAGC  1000

seq1  ACTGTGCTATTATGGTAAGAGTCAACATTCAAACAGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTATTATGGTAAGAGTCAACATTCAAACAGAATTC  1041

seq1: chr9_28295649_28296685
seq2: B6Ng01-126M20.g_71_1088

seq1  GAATTCACATCTGCATAAGCTCCAGGCTGCTGCATAACACCCAGGAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTGCATAAGCTCCAGGCTGCTGCATAACACCCAGGAGACC  50

seq1  CTATTGGTCAATGAGAGCAGTGAGCACCCTCTCTCTCACACTTGTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGTCAATGAGAGCAGTGAGCACCCTCTCTCTCACACTTGTCACTG  100

seq1  CCATCATCACATCTCCATTTCTGCCTCTCTCCATAGCACACACACCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCACATCTCCATTTCTGCCTCTCTCCATAGCACACACACCACTT  150

seq1  TCTTTGTCTATTTTTCCCACCTCTCCATCACATATTTGTTCAATGTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTATTTTTCCCACCTCTCCATCACATATTTGTTCAATGTAGTG  200

seq1  GTGCCCACAGACCCTCATAGTGAGATAGAGAAAAAGATTTTTCTCCGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACAGACCCTCATAGTGAGATAGAGAAAAAGATTTTTCTCCGTGG  250

seq1  CAGAATGTGGGCATCTTTCTCTGTAGGACTTGACTTTCATGTTCTCGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGGGCATCTTTCTCTGTAGGACTTGACTTTCATGTTCTCGGGA  300

seq1  AAGAGTGACCAAAGCAATTGTTGCTTCTCAGGTGCTTTTAGTATAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGACCAAAGCAATTGTTGCTTCTCAGGTGCTTTTAGTATAAAATA  350

seq1  ATCGATGTGCTTAAGCGGCATATTTTGAGGTGACAGATCCTGAACTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGTGCTTAAGCGGCATATTTTGAGGTGACAGATCCTGAACTCCCT  400

seq1  CAGTTGTCTATACACCTTTGTTCATCTCTCTTTCCATTCAGGATTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCTATACACCTTTGTTCATCTCTCTTTCCATTCAGGATTCTCAG  450

seq1  AACAAAGGAGAGTTGGGCCTTGCCTGCAGCTGACTGTAGTTCAGGAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGAGAGTTGGGCCTTGCCTGCAGCTGACTGTAGTTCAGGAGGGA  500

seq1  CCTAGTTGAGTGTGGAAGGGAAGAAGACAGGAGGCTTTTTGAGTCTCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTGAGTGTGGAAGGGAAGAAGACAGGAGGCTTTTTGAGTCTCCGT  550

seq1  TTTCATGAGTAAAATGAGGAAATAACAGTATGCACTCAGGATCTGAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGTAAAATGAGGAAATAACAGTATGCACTCAGGATCTGAGGAC  600

seq1  AACAGGGGGTTTTAAGCAGAGTTCTGAGCAGAGTGCTCAGAATAGCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGGTTTTAAGCAGAGTTCTGAGCAGAGTGCTCAGAATAGCAACT  650

seq1  ACGTTATGTACATTTATATGCTTTTCTTTTTGTGTTATGAATTAATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATGTACATTTATATGCTTTTCTTTTTGTGTTATGAATTAATTTCC  700

seq1  CATGTGCTGTTAATTAGATGCAGGGAAGAAATTCTCTAGAAGTGATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTGTTAATTAGATGCAGGGAAGAAATTCTCTAGAAGTGATGCCT  750

seq1  GCCTTGAATTTCAGGCATTGTGGAAAGCAAGGCAGGGTAAAGACCTACTG  800
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GCCTTGAATTTCA-GCATTGTGGAAAGCAAGGCA-GGTAAAGACCTACTG  798

seq1  AGGTTCCTTG-TCCTACCTCCACTGGACCCTCCAGCAGAGCCTCTTCGGA  849
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGGTTCCTTGTTCCTACCTCCACTGGACCCTCCAGCAGAGCCTC-TCGGA  847

seq1  TGGCAGTACCAGGTCCCTGCAAACCTGAGGTATTTTGTCTTCTTTCAGTT  899
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TGGCAGTA-CAGGTCCTTGCAAACCTGAGGTATTTTGTCTTCTTTCAGTT  896

seq1  CCTCAGTCCTTGACATGTAGATAGAAGGGCAAAGAAAATTAATCATGTTG  949
      ||||||||||||||||||||||||||||   ||||||  |||||||| ||
seq2  CCTCAGTCCTTGACATGTAGATAGAAGG--CAAGAAA--TAATCATG-TG  941

seq1  AAATAAAATTGTGAAAATAGTTTTAAATGAGATATGCTTTGTGATTTATG  999
      ||   ||||||||||||||||||  ||||||| |||||||| || |||||
seq2  AA--TAAATTGTGAAAATAGTTT--AATGAGAAATGCTTTGGGA-TTATG  986

seq1  TGTTAAATTAAATCTGACAGTGAGCCTAACAATTAATA  1037
      ||||||  ||||| |||| ||||| |||   |||||||
seq2  TGTTAA--TAAAT-TGACGGTGAG-CTA--CATTAATA  1018