BAC Information

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BAC

Clone NameB6Ng01-127N07
Chromosome9 (Build37)
Map Location 82,356,835 - 82,449,196
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127N07.bB6Ng01-127N07.g
ACCDH929844DH929845
length1,1241,063
definitionDH929844|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N07, 5' end.DH929845|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,356,835 - 82,357,956)(82,448,105 - 82,449,196)
sequence
gaattcataccaatacctccactggaagccttgcttggctccaagatagc
caagtgaaactctgcacctgccattactaggagtcctcactaggatcacc
ttcatagattccagaaagatttcactgcaaaactatgaaacgtctcagat
tttccatgtcattctttggccatgctaatctctgtgtctttaaactttta
gcgtacgtgctgccaaagcaagcacaacttttaaaatgttcatgtctgag
aaatgatgtagtacttgtatttggatgtttggactttatttttaataaga
gaatgatatttagttccatccaaagcatatggattcttcaaataagcaga
tggggtgattttcttcactgcatgaatgactgggaaataacatgttctgc
aactttgttaactttcttgatttctataaatttaacaagtcttatcttaa
agattggttaagaaatccatgaggcagcaattctgacgagtgagaacatg
cactggggttggagataacattctatacccatgccatgttcattcttcct
ccactatcacttctgatgatagggaagtaatagaaagtaaatgatagtac
aaagcttaaatgttgttcaagcttgtgaatcactaacacagagctgcaga
gccactgggcaactgttttccatcgttctgaggtgatttggtgatccttg
ctcttctctttaccctgagcaagagtataatgggccacaccatgaataga
tccatattagatcccatgttagatatgaattctgagatgaacatggttta
aatgttctttgcacataaaataaatgaaattcccttatacctgtaaaaat
agtgtttgattttgaaaatatccataaatattgctgactgtggtgaggta
gaaacaaggcagagattgaaacaagctcctttgctttcgtaatcatgctg
ctgaagctggtgcatgtatcagaagctctttgggcagatatgcttattat
gatagaatataaagtgaaatggttaaattgaaagtactatgcacatattg
ttaccagactttcaaatttctgtagcaccaggaactggatacaggattaa
atttaatgaaagggacattggaaa
gaattcatttctgtgaactgcagaatataactatacaaatagaccatggg
gctcaaaagagagtgagagaattcctttgtaaagtgacccccagtgtgaa
caataaatctttattgttgttctgatgtcttttgtacagattccagtaaa
atctaaaaggaccatgcatgatgatagattttgtgtattgtcctagaggt
taccaatgaacaggaacaaacaactttaaaatgaaaggaaaaggaaaagg
aaaaggaagaggaagaggaagaggaagagaaaaaggaaaaggaaaaggaa
aaggaagaggaaaggtcttcctttcaggaatatcagttgaattttcatca
tggaagatcagatgcaaaaccaatgaatagcgactctttcctcaaaattg
aaaggtaggaaacttctttgaaagggtaaactgagttctatcttgggaag
caagataaaggatggagattcaggtgcaaaattgtatacatcaggtagta
aataagtattatctgaggtgaagaagttaggatgtttttctgggatattg
attgcatgggctttttatgtctagtccaggtcaattatctctctgtggcc
acttttacctctttcataggagctcacagaaacaaactggggaattcttt
ctgaactactgtctgtttgctggtcttggatgttgtcagtttttaaatca
aaatttgttttctacctagtgattctttaattgattgtgaactagtaaca
tttgtaatgaacagaaatcttgtaaggcagacatcatgtcagtcttggta
gagtctcatgaactatgcacagcctaggtctccctcttcctactcctctt
tgttttaagtgtaaaacagcatgtggtgcctttagcagtaaattctgaac
agcctcattatgtgcaggattaaggcagctctccaagtctggtggaattc
taagatttatgctcttaaaaaatacaatcccttttgttctctttgatatt
tatatttacgcatctgacggtctctctaattatgccaagtctaaggctaa
tatttcattatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82356835_82357956
seq2: B6Ng01-127N07.b_48_1171

seq1  GAATTCATACCAATACCTCCACTGGAAGCCTTGCTTGGCTCCAAGATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCAATACCTCCACTGGAAGCCTTGCTTGGCTCCAAGATAGC  50

seq1  CAAGTGAAACTCTGCACCTGCCATTACTAGGAGTCCTCACTAGGATCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAAACTCTGCACCTGCCATTACTAGGAGTCCTCACTAGGATCACC  100

seq1  TTCATAGATTCCAGAAAGATTTCACTGCAAAACTATGAAACGTCTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGATTCCAGAAAGATTTCACTGCAAAACTATGAAACGTCTCAGAT  150

seq1  TTTCCATGTCATTCTTTGGCCATGCTAATCTCTGTGTCTTTAAACTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGTCATTCTTTGGCCATGCTAATCTCTGTGTCTTTAAACTTTTA  200

seq1  GCGTACGTGCTGCCAAAGCAAGCACAACTTTTAAAATGTTCATGTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACGTGCTGCCAAAGCAAGCACAACTTTTAAAATGTTCATGTCTGAG  250

seq1  AAATGATGTAGTACTTGTATTTGGATGTTTGGACTTTATTTTTAATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTAGTACTTGTATTTGGATGTTTGGACTTTATTTTTAATAAGA  300

seq1  GAATGATATTTAGTTCCATCCAAAGCATATGGATTCTTCAAATAAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATATTTAGTTCCATCCAAAGCATATGGATTCTTCAAATAAGCAGA  350

seq1  TGGGGTGATTTTCTTCACTGCATGAATGACTGGGAAATAACATGTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGATTTTCTTCACTGCATGAATGACTGGGAAATAACATGTTCTGC  400

seq1  AACTTTGTTAACTTTCTTGATTTCTATAAATTTAACAAGTCTTATCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTAACTTTCTTGATTTCTATAAATTTAACAAGTCTTATCTTAA  450

seq1  AGATTGGTTAAGAAATCCATGAGGCAGCAATTCTGACGAGTGAGAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGTTAAGAAATCCATGAGGCAGCAATTCTGACGAGTGAGAACATG  500

seq1  CACTGGGGTTGGAGATAACATTCTATACCCATGCCATGTTCATTCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGTTGGAGATAACATTCTATACCCATGCCATGTTCATTCTTCCT  550

seq1  CCACTATCACTTCTGATGATAGGGAAGTAATAGAAAGTAAATGATAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATCACTTCTGATGATAGGGAAGTAATAGAAAGTAAATGATAGTAC  600

seq1  AAAGCTTAAATGTTGTTCAAGCTTGTGAATCACTAACACAGAGCTGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTAAATGTTGTTCAAGCTTGTGAATCACTAACACAGAGCTGCAGA  650

seq1  GCCACTGGGCAACTGTTTTCCATCGTTCTGAGGTGATTTGGTGATCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGGCAACTGTTTTCCATCGTTCTGAGGTGATTTGGTGATCCTTG  700

seq1  CTCTTCTCTTTACCCTGAGCAAGAGTATAATGGGCCACACCATGAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTTTACCCTGAGCAAGAGTATAATGGGCCACACCATGAATAGA  750

seq1  TCCATATTAGATCCCATGTTAGATATGAATTCTGAGATGAACATGGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTAGATCCCATGTTAGATATGAATTCTGAGATGAACATGGTTTA  800

seq1  AATGTTCTTTGCACATAAAATAAATGAAATT-CCTTATACCTGTAAAAAT  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATGTTCTTTGCACATAAAATAAATGAAATTCCCTTATACCTGTAAAAAT  850

seq1  AGTGTTTGATTTTGAAAATATCTATAAATATTGCTTGACTGTGGTGAGGT  899
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  AGTGTTTGATTTTGAAAATATCCATAAATATTGC-TGACTGTGGTGAGGT  899

seq1  AG-AACAAGGCAGAGATTGAAACAAGCTCCTTTGCTTTCGTAATCATGCT  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGGCAGAGATTGAAACAAGCTCCTTTGCTTTCGTAATCATGCT  949

seq1  GCTG-AGCT-GTGCATGTATCAGAAGCTCTTTGGGCAGATATGCTTATTA  996
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTGGTGCATGTATCAGAAGCTCTTTGGGCAGATATGCTTATTA  999

seq1  TGATAGATTAT-AAGTGAAATGGTTTAATTGAAAGTTACTA-GCACATAT  1044
      ||||||| ||| ||||||||||||| ||||||||| ||||| ||||||||
seq2  TGATAGAATATAAAGTGAAATGGTTAAATTGAAAG-TACTATGCACATAT  1048

seq1  TGTTACCAGACTTTCAAATTTCTGTAGCAGCAGGAACTTGTATACAGGAT  1094
      ||||||||||||||||||||||||||||| ||||||| || |||||||||
seq2  TGTTACCAGACTTTCAAATTTCTGTAGCACCAGGAAC-TGGATACAGGAT  1097

seq1  AAAATTTTAATGAAATGGACATTTGAAA  1122
       ||| |||||||||| ||||||| ||||
seq2  TAAA-TTTAATGAAAGGGACATTGGAAA  1124

seq1: chr9_82448105_82449196
seq2: B6Ng01-127N07.g_70_1132 (reverse)

seq1  TGATAATTTGATAAATAATTAGCCTTAGAGCTATTTGCCCATAATTAGGA  50
      |||||||     |||| |||||||||||    | |||  |||||||| ||
seq2  TGATAAT----GAAAT-ATTAGCCTTAG----ACTTG-GCATAATTA-GA  39

seq1  GAGGAACCCTGTCAGAGTGCAGTAAATTATTACAATAATACAAAAGAGAA  100
      |||  |||  |||||| ||| ||||||      |  ||||  ||||||||
seq2  GAG--ACC--GTCAGA-TGC-GTAAAT------ATAAATATCAAAGAGAA  77

seq1  AACAAAGAGGGGATTGTATTTTTTAAGAAGCATATATCTTAGATATCCAA  150
       | ||    |||||||||||||||||| |||||| ||||||||  |||| 
seq2  CAAAA----GGGATTGTATTTTTTAAG-AGCATAAATCTTAGAATTCCAC  122

seq1  CAGACTTGGGAAGAGACTGCCTTAAATCCTGGCACATAATGA-GCTGTTC  199
      |||||||||  |||| ||||||| |||||| ||||||||||| |||||||
seq2  CAGACTTGG--AGAG-CTGCCTT-AATCCT-GCACATAATGAGGCTGTTC  167

seq1  AGAATTTACTGCTAAAGGCA-CACATGCTGTATAACACTAAAAACAAAGA  248
      |||||||||||||||||||| |||||||||| | ||||| ||||||||||
seq2  AGAATTTACTGCTAAAGGCACCACATGCTGTTTTACACTTAAAACAAAGA  217

seq1  -GAGTAGGAAGAGGGAGACCTAGGCTGTGCATAGTTCATGAGACTCTACC  297
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGGAAGAGGGAGACCTAGGCTGTGCATAGTTCATGAGACTCTACC  267

seq1  -AGACTGACATGATGTCTGCCTTACAAGATTTCTGTTCATTACAAATGTT  346
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGACATGATGTCTGCCTTACAAGATTTCTGTTCATTACAAATGTT  317

seq1  ACTAGTTCACAATCAATTAAAGAATCACTAGGTAGAAAACAAATTTTGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCACAATCAATTAAAGAATCACTAGGTAGAAAACAAATTTTGAT  367

seq1  TTAAAAACTGACAACATCCAAGACCAGCAAACAGACAGTAGTTCAGAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACTGACAACATCCAAGACCAGCAAACAGACAGTAGTTCAGAAAG  417

seq1  AATTCCCCAGTTTGTTTCTGTGAGCTCCTATGAAAGAGGTAAAAGTGGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCAGTTTGTTTCTGTGAGCTCCTATGAAAGAGGTAAAAGTGGCC  467

seq1  ACAGAGAGATAATTGACCTGGACTAGACATAAAAAGCCCATGCAATCAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGATAATTGACCTGGACTAGACATAAAAAGCCCATGCAATCAAT  517

seq1  ATCCCAGAAAAACATCCTAACTTCTTCACCTCAGATAATACTTATTTACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAAAAACATCCTAACTTCTTCACCTCAGATAATACTTATTTACT  567

seq1  ACCTGATGTATACAATTTTGCACCTGAATCTCCATCCTTTATCTTGCTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATGTATACAATTTTGCACCTGAATCTCCATCCTTTATCTTGCTTC  617

seq1  CCAAGATAGAACTCAGTTTACCCTTTCAAAGAAGTTTCCTACCTTTCAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAGAACTCAGTTTACCCTTTCAAAGAAGTTTCCTACCTTTCAAT  667

seq1  TTTGAGGAAAGAGTCGCTATTCATTGGTTTTGCATCTGATCTTCCATGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAAAGAGTCGCTATTCATTGGTTTTGCATCTGATCTTCCATGAT  717

seq1  GAAAATTCAACTGATATTCCTGAAAGGAAGACCTTTCCTCTTCCTTTTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCAACTGATATTCCTGAAAGGAAGACCTTTCCTCTTCCTTTTCC  767

seq1  TTTTCCTTTTCCTTTTTCTCTTCCTCTTCCTCTTCCTCTTCCTTTTCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTCCTTTTTCTCTTCCTCTTCCTCTTCCTCTTCCTTTTCCTT  817

seq1  TTCCTTTTCCTTTCATTTTAAAGTTGTTTGTTCCTGTTCATTGGTAACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCCTTTCATTTTAAAGTTGTTTGTTCCTGTTCATTGGTAACCT  867

seq1  CTAGGACAATACACAAAATCTATCATCATGCATGGTCCTTTTAGATTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAATACACAAAATCTATCATCATGCATGGTCCTTTTAGATTTTA  917

seq1  CTGGAATCTGTACAAAAGACATCAGAACAACAATAAAGATTTATTGTTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCTGTACAAAAGACATCAGAACAACAATAAAGATTTATTGTTCA  967

seq1  CACTGGGGGTCACTTTACAAAGGAATTCTCTCACTCTCTTTTGAGCCCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGGTCACTTTACAAAGGAATTCTCTCACTCTCTTTTGAGCCCCA  1017

seq1  TGGTCTATTTGTATAGTTATATTCTGCAGTTCACAGAAATGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTATTTGTATAGTTATATTCTGCAGTTCACAGAAATGAATTC  1063