BAC Information

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BAC

Clone NameB6Ng01-128K23
Chromosome9 (Build37)
Map Location 80,542,241 - 80,691,706
singlet/doubletdoublet
Overlap genenone
Upstream geneCol12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128K23.bB6Ng01-128K23.g
ACCDH930468DH930469
length1,0901,051
definitionDH930468|Mus musculus domesticus DNA, BAC clone: B6Ng01-128K23, 5' end.DH930469|Mus musculus domesticus DNA, BAC clone: B6Ng01-128K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,542,241 - 80,543,330)(80,690,666 - 80,691,706)
sequence
gaattctttactgttaaaaaagcattattttgtggaaattttagtgcaat
gatataacaatgaatagttagattttgattttcataattttattttccta
ggagcattaactgaagtgtaagagactctattagttctaaaaataaagta
gtatatccaaaatgagtcaaatcatatattaactgcatggctgacccaat
ataatttcatgaatgtttgttcagtttccattttgtgtatagtttcaagt
gagagggaacagtgtttcatacatcttttatccttttccaggttcatttt
cttttggctaacatgacaacgttctctagaaacttcaaatttagaaggta
aaactgagacataactaaatacccctaattgattagcctcatcctagcaa
gtggtttcattctgagttagaaggaggtttagaaacgcctgaaataccgg
gtcagtatgacctggcctaactagttgatgtggttgctgttcactgggca
caaacactgacattgtgatctcaactgcagggttcttcttattaactatc
tttccttcatttccacatgtttttgtttagtttccatattttctattttg
gcattcatagccattctgaaagctgtccatgtaggttagagactgttagg
ttggctgagagaaaggaatagaaaaacacttctgtcttttggaggatttt
tttttcattgagtactgaaacacaaaaaaagtagatccttgttgcttaac
atgtttgagaactgagcatgaaaatgttagaaaaatgcactaatgtttaa
agcttttaaatcaactcttaggctatcatccaaagtatctattgacctaa
gatattcctagatattgttgacatagttttaacaattcaatgccactgat
atatagactaatatagtcaaatttaaatggaccatgaagaactatgaaaa
ttcctgttgtctgatgcttgagggccatgagatgaaattcctgttgtctg
attctggaggccatgagcatccttctttgaaagaaatgtttctttcttat
ctcaaaaattctggaggcaattcttaaccttgaaatttct
gaattctttgtttagctctgtaccccatttttcaatagttatttggttct
ctggagtttaacttcttgagttctttgtatatattgggtattatccctct
atcggatttaggattgttaaagatcctttcctaatctgtttgttgccttt
ttttcctaatgacagtgtcctttgccttacagaagctttgcaattttatg
aggtcccatttgttgatttttgatcttatagcataagccattggtgttct
gttcaggaatatttcccctgtgcccatatcttcaatgcagtttcccactt
tctcttctataagtttcaatgtctctggttttatgtggaattccttgatc
cacttagacttgagctttgtgcaaggagataagtatgaatcaattcacat
tcttctatatgctaaccgccagttgagccagccccatttgttggaaatgt
tgtcttttttacactggatggttttaaacatatattaggttaaaactgta
taaaaggggcaactgacacatggagaattctgctagctatcagatgtata
agattataagatgagagtaatgttcaaagtaatgccaattatgatgcagg
ctggagatttctcagaagaattcaaactgttgctgcaggcattccgttcc
tatagcatgtggctcacaacagcctgtatctctagctccagggtataaga
tgatgacagcgtccacagcacatccactaattcccatatacatacacaca
tacacacacacacatacatacatacatacatacatacatacatacgcaaa
actaaaattaatacaaataaatccttttttaaaaatacaaatcctatttt
tacagaaatattttgattatggtatacatataattattatcacaacacaa
tagtttaataggaggccctcaaagtagaattcattagactctcatggtat
tcgtaactattgcttatttatgggttactatttgctatgatgtaatacca
tggacaaaaaaccagttgtggaaggaatgattcatttggcctaaggtttc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80542241_80543330
seq2: B6Ng01-128K23.b_52_1141

seq1  GAATTCTTTACTGTTAAAAAAGCATTATTTTGTGGAAATTTTAGTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTGTTAAAAAAGCATTATTTTGTGGAAATTTTAGTGCAAT  50

seq1  GATATAACAATGAATAGTTAGATTTTGATTTTCATAATTTTATTTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAACAATGAATAGTTAGATTTTGATTTTCATAATTTTATTTTCCTA  100

seq1  GGAGCATTAACTGAAGTGTAAGAGACTCTATTAGTTCTAAAAATAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTAACTGAAGTGTAAGAGACTCTATTAGTTCTAAAAATAAAGTA  150

seq1  GTATATCCAAAATGAGTCAAATCATATATTAACTGCATGGCTGACCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCAAAATGAGTCAAATCATATATTAACTGCATGGCTGACCCAAT  200

seq1  ATAATTTCATGAATGTTTGTTCAGTTTCCATTTTGTGTATAGTTTCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCATGAATGTTTGTTCAGTTTCCATTTTGTGTATAGTTTCAAGT  250

seq1  GAGAGGGAACAGTGTTTCATACATCTTTTATCCTTTTCCAGGTTCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAACAGTGTTTCATACATCTTTTATCCTTTTCCAGGTTCATTTT  300

seq1  CTTTTGGCTAACATGACAACGTTCTCTAGAAACTTCAAATTTAGAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTAACATGACAACGTTCTCTAGAAACTTCAAATTTAGAAGGTA  350

seq1  AAACTGAGACATAACTAAATACCCCTAATTGATTAGCCTCATCCTAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGACATAACTAAATACCCCTAATTGATTAGCCTCATCCTAGCAA  400

seq1  GTGGTTTCATTCTGAGTTAGAAGGAGGTTTAGAAACGCCTGAAATACCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCATTCTGAGTTAGAAGGAGGTTTAGAAACGCCTGAAATACCGG  450

seq1  GTCAGTATGACCTGGCCTAACTAGTTGATGTGGTTGCTGTTCACTGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATGACCTGGCCTAACTAGTTGATGTGGTTGCTGTTCACTGGGCA  500

seq1  CAAACACTGACATTGTGATCTCAACTGCAGGGTTCTTCTTATTAACTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTGACATTGTGATCTCAACTGCAGGGTTCTTCTTATTAACTATC  550

seq1  TTTCCTTCATTTCCACATGTTTTTGTTTAGTTTCCATATTTTCTATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCATTTCCACATGTTTTTGTTTAGTTTCCATATTTTCTATTTTG  600

seq1  GCATTCATAGCCATTCTGAAAGCTGTCCATGTAGGTTAGAGACTGTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATAGCCATTCTGAAAGCTGTCCATGTAGGTTAGAGACTGTTAGG  650

seq1  TTGGCTGAGAGAAAGGAATAGAAAAACACTTCTGTCTTTTGGAGGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAGAGAAAGGAATAGAAAAACACTTCTGTCTTTTGGAGGATTTT  700

seq1  TTTTTCATTGAGTACTGAAACACAAAAAAAGTAGATCCTTGTTGCTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTGAGTACTGAAACACAAAAAAAGTAGATCCTTGTTGCTTAAC  750

seq1  ATGTTTGAGAACTGAGCATGAAAATGTTAGAAAAATGCACTAATGTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAGAACTGAGCATGAAAATGTTAGAAAAATGCACTAATGTTTAA  800

seq1  AGCTTTTAAATCAACTCTTAGGCTATCATCCAAAGTATCTATTGACCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTAAATCAACTCTTAGGCTATCATCCAAAGTATCTATTGACCTAA  850

seq1  GATATTCCTAGATATTGTTGACATAGTTTTAACAATTCAATGCCACTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCCTAGATATTGTTGACATAGTTTTAACAATTCAATGCCACTGAT  900

seq1  ATATAGACTAATATAGTCAAATTTAAATGGACCATGAAGAACTATGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACTAATATAGTCAAATTTAAATGGACCATGAAGAACTATGAAAA  950

seq1  TTCCTGTTGTCTGATGCTTGAGGGCCATGAGATGAAATTCCTGTTGTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTGTCTGATGCTTGAGGGCCATGAGATGAAATTCCTGTTGTCTG  1000

seq1  ATTCTGGAGGGCCATGAGCCATCCTTCTTTGAGAGAAATGTTTC-TTCTT  1049
      |||||||| ||||||||| ||||||||||||| ||||||||||| |||||
seq2  ATTCTGGA-GGCCATGAG-CATCCTTCTTTGAAAGAAATGTTTCTTTCTT  1048

seq1  ATCTCATAAATTCTGGATGCATTTCTTAACCTTG-TATTTCT  1090
      |||||| |||||||||| ||| ||||||||||||  ||||||
seq2  ATCTCAAAAATTCTGGAGGCAATTCTTAACCTTGAAATTTCT  1090

seq1: chr9_80690666_80691706
seq2: B6Ng01-128K23.g_69_1119 (reverse)

seq1  GGAAACC-TAAGCCAAATGAATCATTTCTTTCACAACTTGGTTTTTGT-C  48
      ||||||| || ||||||||||||||| ||| ||||||| | ||||||| |
seq2  GGAAACCTTAGGCCAAATGAATCATTCCTTCCACAACTGGTTTTTTGTCC  50

seq1  ATGGTATTACATCATAGC-AATAGTAA-CCATAAAT-AGC-ATAGTTTAC  94
      |||||||||||||||||| |||||||| |||||||| ||| |||| ||||
seq2  ATGGTATTACATCATAGCAAATAGTAACCCATAAATAAGCAATAG-TTAC  99

seq1  GAATA-CATGAGAGTCTAATGAATTCTACTTTGAGGGCTTCTTA-TAAAC  142
      ||||| |||||||||||||||||||||||||||||||| || || |||||
seq2  GAATACCATGAGAGTCTAATGAATTCTACTTTGAGGGCCTCCTATTAAAC  149

seq1  TATTGTGTTGTGATAATAATTATATGTATAACATAATCAAAATATTTCTG  192
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATTGTGTTGTGATAATAATTATATGTATACCATAATCAAAATATTTCTG  199

seq1  T-AAAATAGGATTTGTATTTTTAAAAAA-GATTTATTTGTATTAATTTTA  240
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAAATAGGATTTGTATTTTTAAAAAAGGATTTATTTGTATTAATTTTA  249

seq1  GTTTTGCGTATGTATGTATGTATGTATGTATGTATGTATGTGTGTGTGTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCGTATGTATGTATGTATGTATGTATGTATGTATGTGTGTGTGTG  299

seq1  TATGTGTGTATGTATATGGGAATTAGTGGATGTGCTGTGGACGCTGTCAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTATGTATATGGGAATTAGTGGATGTGCTGTGGACGCTGTCAT  349

seq1  CATCTTATACCCTGGAGCTAGAGATACAGGCTGTTGTGAGCCACATGCTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATACCCTGGAGCTAGAGATACAGGCTGTTGTGAGCCACATGCTA  399

seq1  TAGGAACGGAATGCCTGCAGCAACAGTTTGAATTCTTCTGAG-AATCTCC  439
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGGAACGGAATGCCTGCAGCAACAGTTTGAATTCTTCTGAGAAATCTCC  449

seq1  AGCCTGCATCATAATTGGCATTACTTTGAACATTACTCTCATCTTATAAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCATCATAATTGGCATTACTTTGAACATTACTCTCATCTTATAAT  499

seq1  CTTATACATCTGATAGCTAGCAGAATTCTCCATGTGTCAGTTGCCCCTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACATCTGATAGCTAGCAGAATTCTCCATGTGTCAGTTGCCCCTTT  549

seq1  TATACAGTTTTAACCTAATATATGTTTAAAACCATCCAGTGTAAAAAAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTTTTAACCTAATATATGTTTAAAACCATCCAGTGTAAAAAAGA  599

seq1  CAACATTTCCAACAAATGGGGCTGGCTCAACTGGCGGTTAGCATATAGAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTCCAACAAATGGGGCTGGCTCAACTGGCGGTTAGCATATAGAA  649

seq1  GAATGTGAATTGATTCATACTTATCTCCTTGCACAAAGCTCAAGTCTAAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAATTGATTCATACTTATCTCCTTGCACAAAGCTCAAGTCTAAG  699

seq1  TGGATCAAGGAATTCCACATAAAACCAGAGACATTGAAACTTATAGAAGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAGGAATTCCACATAAAACCAGAGACATTGAAACTTATAGAAGA  749

seq1  GAAAGTGGGAAACTGCATTGAAGATATGGGCACAGGGGAAATATTCCTGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGAAACTGCATTGAAGATATGGGCACAGGGGAAATATTCCTGA  799

seq1  ACAGAACACCAATGGCTTATGCTATAAGATCAAAAATCAACAAATGGGAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACACCAATGGCTTATGCTATAAGATCAAAAATCAACAAATGGGAC  849

seq1  CTCATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCATTAGGAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCATTAGGAA  899

seq1  AAAAAGGCAACAAACAGATTAGGAAAGGATCTTTAACAATCCTAAATCCG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCAACAAACAGATTAGGAAAGGATCTTTAACAATCCTAAATCCG  949

seq1  ATAGAGGGATAATACCCAATATATACAAAGAACTCAAGAAGTTAAACTCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGGATAATACCCAATATATACAAAGAACTCAAGAAGTTAAACTCC  999

seq1  AGAGAACCAAATAACTATTGAAAAATGGGGTACAGAGCTAAACAAAGAAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCAAATAACTATTGAAAAATGGGGTACAGAGCTAAACAAAGAAT  1049

seq1  TC  1041
      ||
seq2  TC  1051