BAC Information

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BAC

Clone NameB6Ng01-129C12
Chromosome9 (Build37)
Map Location 82,240,097 - 82,435,339
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129C12.bB6Ng01-129C12.g
ACCDH930817DH930818
length3371,022
definitionDH930817|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C12, 5' end.DH930818|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,434,996 - 82,435,339)(82,240,097 - 82,241,126)
sequence
cagacttgcagagtacctttttctttccttgtgtgtatgtgtgtgtattt
ccttctgaagaaagatagctatacatacaaaaaggagtcttaggttaaag
agtaaataagtaagacttacctttatttttattttccactcttagtgcct
cagagcagtctgagaattgccaaggagattcattttttggaaaggtggca
aagatgatacatgaaagattaacctgatttcctcaaaaacaaaacaaaac
aaaacaaaaacatggtctcctctcctctcccctcctctcccctcctttcc
cctcctctcccctcctctcccctcccctcccacccct
gaattctcaatttacacaaccaaaggaaaacaagaacaaatattcagaat
ggagcctggctgccctatcgagacgtcacacatctttctgcttgaaaact
taggtcattttacatctgagactcactggctgaatggaaacccaagtctc
acatatgaaagaccctataatacaatgtcaaatttgcatggtcacaattc
tctaaggaacatggtggttatacagaatggaaaatgctcaggcatttttt
tttttaacagcataaagacataaggttactggctgaaaactgctactgtg
gctgcctggtaagagagtatggaaagaggaaaggcattttgtgcaggaag
cagattgaaccctgccatgtaaccaaatgactggtcatccatttctgata
cccaatgatgttattgcagtagaaagacttcagagatggctaaagctcca
ttcctgcttcttactttgagtggtagtaactattatcaccagaactctca
agtgtactcttaagctctatccctgggtcacaaaactgaataaaatacaa
aattgtatctcagaagaagtggcagaaacaaatgatacttgttaggatct
gaatacagggactgtgcctcatgttgactttaattcacctgtctttgctg
tgataataactaaatggaccccagaaaataacaatatactctgaaaataa
atcatgccttcaatttgctgtgcagacctatgacaggctcacaaaagctg
agcaatacagccctcaggaatagattgcagctcactgctttcccatgttg
tgtgctttctaaacttgtcagaaaagagaagcatgttctcattttataga
agaaacaatggtatatatttaaggatttcccccaaagctatgctaccatc
ctgtattcggcatataaataattcaattctttggaccacctatcagacct
ctgaaaatacactatccttgctttaagcatgacagtattgaatagatgaa
aaaaagaaatcaaccttatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82434996_82435339
seq2: B6Ng01-129C12.b_49_391 (reverse)

seq1  AGGGGAGGGGAGGGGAGGGGAGAGGAGGGGAGAGGAGGGGAAAGGAGGGG  50
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGG-TGGGAGGGGAGGGGAGAGGAGGGGAGAGGAGGGGAAAGGAGGGG  49

seq1  AGAGGAGGGGAGAGGAGAGGAGACCATGTTTTTGTTTTGTTTTGTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGGAGAGGAGAGGAGACCATGTTTTTGTTTTGTTTTGTTTTGT  99

seq1  TTTTGAGGAAATCAGGTTAATCTTTCATGTATCATCTTTGCCACCTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGAAATCAGGTTAATCTTTCATGTATCATCTTTGCCACCTTTCC  149

seq1  AAAAAATGAATCTCCTTGGCAATTCTCAGACTGCTCTGAGGCACTAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAATCTCCTTGGCAATTCTCAGACTGCTCTGAGGCACTAAGAG  199

seq1  TGGAAAATAAAAATAAAGGTAAGTCTTACTTATTTACTCTTTAACCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATAAAAATAAAGGTAAGTCTTACTTATTTACTCTTTAACCTAAG  249

seq1  ACTCCTTTTTGTATGTATAGCTATCTTTCTTCAGAAGGAAATACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTTTGTATGTATAGCTATCTTTCTTCAGAAGGAAATACACACAC  299

seq1  ATACACACAAGGAAAGAAAAAGGTACTCTGCAAGTCTGGAATTC  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACAAGGAAAGAAAAAGGTACTCTGCAAGTCTGGAATTC  343

seq1: chr9_82240097_82241126
seq2: B6Ng01-129C12.g_71_1092

seq1  GAATTCTCAATTTACACAACCAAAGGAAAACAAGAACAAATATTCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTTACACAACCAAAGGAAAACAAGAACAAATATTCAGAAT  50

seq1  GGAGCCTGGCTGCCCTATCGAGACGTCACACATCTTTCTGCTTGAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGCTGCCCTATCGAGACGTCACACATCTTTCTGCTTGAAAACT  100

seq1  TAGGTCATTTTACATCTGAGACTCACTGGCTGAATGGAAACCCAAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATTTTACATCTGAGACTCACTGGCTGAATGGAAACCCAAGTCTC  150

seq1  ACATATGAAAGACCCTATAATACAATGTCAAATTTGCATGGTCACAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAAAGACCCTATAATACAATGTCAAATTTGCATGGTCACAATTC  200

seq1  TCTAAGGAACATGGTGGTTATACAGAATGGAAAATGCTCAGGCATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAACATGGTGGTTATACAGAATGGAAAATGCTCAGGCATTTTTT  250

seq1  TTTTTAACAGCATAAAGACATAAGGTTACTGGCTGAAAACTGCTACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAGCATAAAGACATAAGGTTACTGGCTGAAAACTGCTACTGTG  300

seq1  GCTGCCTGGTAAGAGAGTATGGAAAGAGGAAAGGCATTTTGTGCAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGGTAAGAGAGTATGGAAAGAGGAAAGGCATTTTGTGCAGGAAG  350

seq1  CAGATTGAACCCTGCCATGTAACCAAATGACTGGTCATCCATTTCTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGAACCCTGCCATGTAACCAAATGACTGGTCATCCATTTCTGATA  400

seq1  CCCAATGATGTTATTGCAGTAGAAAGACTTCAGAGATGGCTAAAGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGATGTTATTGCAGTAGAAAGACTTCAGAGATGGCTAAAGCTCCA  450

seq1  TTCCTGCTTCTTACTTTGAGTGGTAGTAACTATTATCACCAGAACTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTCTTACTTTGAGTGGTAGTAACTATTATCACCAGAACTCTCA  500

seq1  AGTGTACTCTTAAGCTCTATCCCTGGGTCACAAAACTGAATAAAATACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTCTTAAGCTCTATCCCTGGGTCACAAAACTGAATAAAATACAA  550

seq1  AATTGTATCTCAGAAGAAGTGGCAGAAACAAATGATACTTGTTAGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATCTCAGAAGAAGTGGCAGAAACAAATGATACTTGTTAGGATCT  600

seq1  GAATACAGGGACTGTGCCTCATGTTGACTTTAATTCACCTGTCTTTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGGGACTGTGCCTCATGTTGACTTTAATTCACCTGTCTTTGCTG  650

seq1  TGATAATAACTAAATGGACCCCAGAAAATAACAATATACTCTGAAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAACTAAATGGACCCCAGAAAATAACAATATACTCTGAAAATAA  700

seq1  ATCATGCCTTCAAATTGCTGTGCAGACCTATGACAGGCTCACAAAAGCTG  750
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCTTCAATTTGCTGTGCAGACCTATGACAGGCTCACAAAAGCTG  750

seq1  AGCAATACAG-CCTCAGGAATAGATTGCAGCTCACTGCTTTCCCATGTTG  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCAATACAGCCCTCAGGAATAGATTGCAGCTCACTGCTTTCCCATGTTG  800

seq1  TGTGCTTTCTAAACTTGTCAGAAAAGAGAAGCATGTTCTCATTTAATAGA  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGCTTTCTAAACTTGTCAGAAAAGAGAAGCATGTTCTCATTTTATAGA  850

seq1  AGAAACAATGGTATATA-TTAAGGATTTCCCCCCAAAGCTATGCTACCAT  898
      ||||||||||||||||| |||||||||| |||||||||||||||||||| 
seq2  AGAAACAATGGTATATATTTAAGGATTT-CCCCCAAAGCTATGCTACCA-  898

seq1  TCCTGTATTCTGCATATAAATAATTCAAATTTCTTTGGACCATCTATTCA  948
      |||||||||| |||||||||||||||||  |||||||||||| ||| |||
seq2  TCCTGTATTCGGCATATAAATAATTCAA--TTCTTTGGACCACCTA-TCA  945

seq1  GACCTCCTGAAAAATACACTATCC-TGCTTTAAGCATGACAGTATTGGAA  997
      ||||| ||| |||||||||||||| ||||||||||||||||||||| |||
seq2  GACCT-CTG-AAAATACACTATCCTTGCTTTAAGCATGACAGTATT-GAA  992

seq1  TAAGATGAGAAAAGAAAATTTAAAACTTATATC  1030
      | |||||| ||||  |||  | || ||||||||
seq2  T-AGATGAAAAAAAGAAA--TCAACCTTATATC  1022