BAC Information

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BAC

Clone NameB6Ng01-129C15
Chromosome9 (Build37)
Map Location 79,809,447 - 79,974,848
singlet/doubletdoublet
Overlap geneFilip1, LOC666490, Senp6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, LOC100041218
Downstream geneLOC100041249, Myo6, Impg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129C15.bB6Ng01-129C15.g
ACCDH930821DH930822
length1,246827
definitionDH930821|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C15, 5' end.DH930822|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,973,589 - 79,974,848)(79,809,447 - 79,810,270)
sequence
gaattccactactgggctattaaatcaaattttcaggtttcaaaacatgc
tttgagttaagagatgctgaaatatctaggaactagaaaccatcagcctg
gatataaggaggctgagttttattttgtttcatgtatgtgccctttcact
acacagacagtaaacacatactaagttggtgtttatgaaaactgtgctgg
cacttccttactgtctcacatgtagtacctcattcaactctcataaccct
ttattctcattggaaaagatttacttgtgtgtgtgagtacacgatcgcta
acttcagacacaccagaagaagagatcacatctcattaaaaatggttgtg
agccatcatgtggttgctgggaattgaactcaggacctctggaagagctt
attctcatttttaaaaatgacgaaacaaaattagagaaagaaacttgact
agaagattactcttctcacatgacacactatatggcagtgacaaaaattt
ctaattaaaagtctgattttagaaagcaaagatttaaaaagacatgcaat
ggcagaatgtcaggtttgctaataagtcagttaacttacttcaaataaaa
gtcgataataacatcatttaaaaactctccttcacttagacagtgcaggt
cctcattagtaacagaaatgcctcccttagctggaggtggtgggtatact
atcaatctataataaaagaaaaagaaaacattacttagcacagaaacaga
catttttaagcactgaaaacataaaaagcatttgctcacttttctacacg
gccaatgaagattgtatggctctccccagcttcttcgtcatcatcaaaaa
actgcaattcttgtttgcttctaagttgtattttagattcaaacgacacc
tggcagaaaaaataaccaattttgtgaagttaactaggaaatatttttaa
taaaagagttaagtacaagcagagaagcatttcaatggaaatgcagacct
ataacctaatctaagcacactcaggagacgtgggcaggctcactggaagc
ttcagaatagctgtcttcaaagttgagtttgaggttagccagggatatta
gaagcaagatctgctctaaaccacacaaaaccaaacaaggaagccttgaa
aaatatacatctgaaagttatgacatagtgcttaatttccaacacaaggc
gaggagtgggctagttcacttgaccgcttccacacgtatatatata
gtcttcatgtgtgagtatgagaaaggtaaaaagataacaggctggcaaga
tggctcagagagctactcaagttccgtttctggattccacaggaaggtgg
gagggaagaactaagttctcaaagttttcctttgacctgcacagtcctgt
gcacgcacacacacacacacacacacacacacacacacacacacacagag
tctggcgtgcacacataatagtaaaccagtatgtgaaaaagcacatttgg
aaagacaaagccagcacgcaccgctactcatctcggccacaggatcaaac
agcaaacggcaggcttgtcatgaggtctagctgcagggcaggctttgctc
aaaacagggctctcccagagggaagcaggatgtgagcacacgggactcgg
gggagatgctacttccatctctgctctgcaccagcccactcagtgtcaag
catccggggatcgcgtacctccctgtgggcggggctccccttgtggagca
catccaccccacatgacactccatgatgtgggctgtcagcttatgcttgg
accatagcatcactcaggaaacaagacgctacaaagatgcgcttactact
tcagcctgataagcctgcttcaaaactccagtctagtaaatgtccctagt
aaatctaccaaactactgatagagaactatgctggctgtttttgaaaata
aaagtctttaggtctgccagatttgagaacaataaggaggaaaagaaaac
aatgtgctctcagaagcatcccctgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgcgtgcgcgcgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79973589_79974848
seq2: B6Ng01-129C15.b_48_1293 (reverse)

seq1  TATA-ATATACTGTCTGGAAGCTG-CTAGTGAAACTAGCCCCACTCCTCG  48
      |||| |||||| || ||||||| | | |||| |||||| |||||||||||
seq2  TATATATATAC-GTGTGGAAGCGGTCAAGTG-AACTAG-CCCACTCCTCG  47

seq1  CCTTTTGTTGGTTTGTATATTTAAGCACTA-GTCATACTTTTCTAGATTG  97
      |||| ||||||       | |||||||||| ||||||  |||| ||||  
seq2  CCTTGTGTTGG------AAATTAAGCACTATGTCATAACTTTC-AGATGT  90

seq1  TTATTTT--CAGGCTTCCTTTGTTTTTGTTTTTGTTGTTGTTTTTGAGGC  145
       ||||||   |||||||||   | |||| ||||||   || ||| || ||
seq2  ATATTTTTCAAGGCTTCCT---TGTTTGGTTTTGT--GTGGTTTAGA-GC  134

seq1  AGGATCTTGC-TCT-ATATCCCTGGCTACCCTCAAACTCAACTTTGGAGA  193
      | |||||||| ||| ||||||||||||| ||||||||||||||||| |||
seq2  A-GATCTTGCTTCTAATATCCCTGGCTAACCTCAAACTCAACTTTGAAGA  183

seq1  CCAGGCTA-TCTGAAGCTTCCAGTGAGCCTGCCCACGTCTCCTGAGTGTG  242
      |   |||| |||||||||||||||||||||||||||||||||||||||||
seq2  C--AGCTATTCTGAAGCTTCCAGTGAGCCTGCCCACGTCTCCTGAGTGTG  231

seq1  CTTAGGTTAGGTTATAGGTCTGCATTTTCCATTGAAATGCTTCTTCTGCC  292
      ||||| |||||||||||||||||| |||||||||||||||||| |||| |
seq2  CTTAGATTAGGTTATAGGTCTGCA-TTTCCATTGAAATGCTTC-TCTG-C  278

seq1  TTGTACTTAACTCTTTTTATTAAAAATATTTCCTAGTTAACTTCAC-AAA  341
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TTGTACTTAACTC-TTTTATTAAAAATATTTCCTAGTTAACTTCACAAAA  327

seq1  TTGGTTATTTTTTCTGCCAGGTGTCGTTTGAATCTAAAATACAACTTAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATTTTTTCTGCCAGGTGTCGTTTGAATCTAAAATACAACTTAGA  377

seq1  AGCAAACAAGAATTGCAGTTTTTTGATGATGACGAAGAAGCTGGGGAGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAAGAATTGCAGTTTTTTGATGATGACGAAGAAGCTGGGGAGAG  427

seq1  CCATACAATCTTCATTGGCCCTGTAGAAAAGTGAGCAAATGCTTTTTATG  491
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCATACAATCTTCATTGGCCGTGTAGAAAAGTGAGCAAATGCTTTTTATG  477

seq1  TTTTCAGTGCTTAAAAATGTCTGTTTCTGTGCTAAGTAATGTTTTCTTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGCTTAAAAATGTCTGTTTCTGTGCTAAGTAATGTTTTCTTTT  527

seq1  TCTTTTATTATAGATTGATAGTATACCCACCACCTCCAGCTAAGGGAGGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTATAGATTGATAGTATACCCACCACCTCCAGCTAAGGGAGGC  577

seq1  ATTTCTGTTACTAATGAGGACCTGCACTGTCTAAGTGAAGGAGAGTTTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTACTAATGAGGACCTGCACTGTCTAAGTGAAGGAGAGTTTTT  627

seq1  AAATGATGTTATTATCGACTTTTATTTGAAGTAAGTTAACTGACTTATTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTTATTATCGACTTTTATTTGAAGTAAGTTAACTGACTTATTA  677

seq1  GCAAACCTGACATTCTGCCATTGCATGTCTTTTTAAATCTTTGCTTTCTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTGACATTCTGCCATTGCATGTCTTTTTAAATCTTTGCTTTCTA  727

seq1  AAATCAGACTTTTAATTAGAAATTTTTGTCACTGCCATATAGTGTGTCAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGACTTTTAATTAGAAATTTTTGTCACTGCCATATAGTGTGTCAT  777

seq1  GTGAGAAGAGTAATCTTCTAGTCAAGTTTCTTTCTCTAATTTTGTTTCGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGAGTAATCTTCTAGTCAAGTTTCTTTCTCTAATTTTGTTTCGT  827

seq1  CATTTTTAAAAATGAGAATAAGCTCTTCCAGAGGTCCTGAGTTCAATTCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAAATGAGAATAAGCTCTTCCAGAGGTCCTGAGTTCAATTCC  877

seq1  CAGCAACCACATGATGGCTCACAACCATTTTTAATGAGATGTGATCTCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGATGGCTCACAACCATTTTTAATGAGATGTGATCTCTT  927

seq1  CTTCTGGTGTGTCTGAAGTTAGCGATCGTGTACTCACACACACAAGTAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGTGTCTGAAGTTAGCGATCGTGTACTCACACACACAAGTAAA  977

seq1  TCTTTTCCAATGAGAATAAAGGGTTATGAGAGTTGAATGAGGTACTACAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAATGAGAATAAAGGGTTATGAGAGTTGAATGAGGTACTACAT  1027

seq1  GTGAGACAGTAAGGAAGTGCCAGCACAGTTTTCATAAACACCAACTTAGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGTAAGGAAGTGCCAGCACAGTTTTCATAAACACCAACTTAGT  1077

seq1  ATGTGTTTACTGTCTGTGTAGTGAAAGGGCACATACATGAAACAAAATAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTACTGTCTGTGTAGTGAAAGGGCACATACATGAAACAAAATAA  1127

seq1  AACTCAGCCTCCTTATATCCAGGCTGATGGTTTCTAGTTCCTAGATATTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCCTCCTTATATCCAGGCTGATGGTTTCTAGTTCCTAGATATTT  1177

seq1  CAGCATCTCTTAACTCAAAGCATGTTTTGAAACCTGAAAATTTGATTTAA  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCTTAACTCAAAGCATGTTTTGAAACCTGAAAATTTGATTTAA  1227

seq1  TAGCCCAGTAGTGGAATTC  1260
      |||||||||||||||||||
seq2  TAGCCCAGTAGTGGAATTC  1246

seq1: chr9_79809447_79810270
seq2: B6Ng01-129C15.g_77_903

seq1  GTCTTCATGTGTGAGTATGAGAAAGGTAAAAAGATAACAGGCTGGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATGTGTGAGTATGAGAAAGGTAAAAAGATAACAGGCTGGCAAGA  50

seq1  TGGCTCAGAGAGCTACTCAAGTTCCGTTTCTGGATTCCACAGGAAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGAGAGCTACTCAAGTTCCGTTTCTGGATTCCACAGGAAGGTGG  100

seq1  GAGGGAAGAACTAAGTTCTCAAAGTTTTCCTTTGACCTGCACAGTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGAACTAAGTTCTCAAAGTTTTCCTTTGACCTGCACAGTCCTGT  150

seq1  GCACGCACACACACACACACACACACACACACACACACACACACACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCACACACACACACACACACACACACACACACACACACACACAGAG  200

seq1  TCTGGCGTGCACACATAATAGTAAACCAGTATGTGAAAAAGCACATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGTGCACACATAATAGTAAACCAGTATGTGAAAAAGCACATTTGG  250

seq1  AAAGACAAAGCCAGCACGCACCGCTACTCATCTCGGCCACAGGATCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAGCCAGCACGCACCGCTACTCATCTCGGCCACAGGATCAAAC  300

seq1  AGCAAACGGCAGGCTTGTCATGAGGTCTAGCTGCAGGGCAGGCTTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACGGCAGGCTTGTCATGAGGTCTAGCTGCAGGGCAGGCTTTGCTC  350

seq1  AAAACAGGGCTCTCCCAGAGGGAAGCAGGATGTGAGCACACGGGACTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGCTCTCCCAGAGGGAAGCAGGATGTGAGCACACGGGACTCGG  400

seq1  GGGAGATGCTACTTCCATCTCTGCTCTGCACCAGCCCACTCAGTGTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGCTACTTCCATCTCTGCTCTGCACCAGCCCACTCAGTGTCAAG  450

seq1  CATCCGGGGATCGCGTACCTCCCTGTGGGCGGGGCTCCCCTTGTGGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGGGGATCGCGTACCTCCCTGTGGGCGGGGCTCCCCTTGTGGAGCA  500

seq1  CATCCACCCCACATGACACTCCATGATGTGGGCTGTCAGCTTATGCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCCCACATGACACTCCATGATGTGGGCTGTCAGCTTATGCTTGG  550

seq1  ACCATAGCATCACTCAGGAAACAAGACGCTACAAAGATGCGCTTACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCATCACTCAGGAAACAAGACGCTACAAAGATGCGCTTACTACT  600

seq1  TCAGCCTGATAAGCCTGCTTCAAAACTCCAGTCTAGTAAATGTCCCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGATAAGCCTGCTTCAAAACTCCAGTCTAGTAAATGTCCCTAGT  650

seq1  AAATCTACCAAACTACTGATAGAGAACTATGCTGGCTGTTTTTGAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACCAAACTACTGATAGAGAACTATGCTGGCTGTTTTTGAAAATA  700

seq1  AAAGTCTTTAGGTCTGCCAGATTTGAGAACAAT-AGGAGGAAAAGAAAAC  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGTCTTTAGGTCTGCCAGATTTGAGAACAATAAGGAGGAAAAGAAAAC  750

seq1  AATGTGCTCTCAGAAGCATCCCCTGTGTGTGTGTGTGTGTGTGTGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTCTCAGAAGCATCCCCTGTGTGTGTGTGTGTGTGTGTGTGTGT  800

seq1  GTGTGTGTGTGTGTGCTTGTGTGTG--  824
      ||||||||||| ||||  | |||||  
seq2  GTGTGTGTGTGCGTGCGCGCGTGTGTG  827