BAC Information

Click to search

BAC

Clone NameB6Ng01-130D24
Chromosome9 (Build37)
Map Location 112,130,279 - 112,131,432
singlet/doubletsinglet
Overlap geneLOC100039341
Upstream geneMlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21
Downstream geneLOC620760, LOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130D24.bB6Ng01-130D24.g
ACCDH931613DH931614
length1,1411,071
definitionDH931613|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D24, 5' end.DH931614|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacaccagttttgactttgtaccatactggcttatagagtcatg
ctctggtgataaactgcatagatttattttcaagtaataaatgtgcacca
ttgcccagctacagtcattgtttaacactcagttgaccatttgctttaga
gaggtggtgtgtagctaacgtaaatgctgtgaaggtttggattctgttgc
gtacttagatctgcttgtacttgttttcttctcagctgatgatgtcattg
catcatcacagcggaactggaattcctactgaaattacacttcacgacaa
acaagacacaagccaagaacgccactcactgtgttttcccacaaataagt
gctataatgtcctgtgagaattttgtctgtgcttttagagacatgggaat
catttgacagtatttaattttccagttgtgctccttatatacaaataaaa
aaaattaaaggatcaagactaacctttgggtgccaatgagttaacctgtt
ccttctttaaatccagtggtctatatctagaattttctagagttttctaa
gttgctgtaacattgaggaagtcctctgaaggcacattgaaatgctgagt
gtgtggatggtttctggaccacctaatgtactattgaaaagataatttat
ttaaactgggagaaagaaaaccttttataaattaaatgttccatgttgta
ctttaaagacatggggatattttagcctgcatatgttgattccaaccaca
gtgttctaaattaccattaaatttatttacgttttgtttatgagtgtttg
cccatatgtatgcatgtccaccatgcgtgtcattggatggttgtgagcca
ccaggtggctactgggaagagatctcagattctctgcaagaacagcaagt
gctcttagccagtgagccatctctccagcccctcccttatggcgattctt
tatgccaaataaatcaaaatgccaggatgaatgaatttattttccctttc
actggaggatcttatatgctggggttgtctagggtgagggttgtacctag
gcatatgagggacctgctaagtaacaaaaaccacctccctgttgttcatg
attctgcatctatccctgtattagtggttaataacagcaac
gaattctttttgtgaaacagaatagaaattcacaacacacaactccaaat
ggatcaaggtccttgatatgaaacctggtcccttgaaactggtagaggag
aaattagggaccatgcttcaatagataggatttctgaataagactctggt
agcataaaacaggatcatgtgtcatgtaataccagtgtctctcatgaaac
aaaaatctctgtacagcaaaagaaagtgtgacgcaagtaaatagtagtcc
cacagagtgggagaaggttactgtggctactcatccagcaggaagttagt
gtctagaatattccaaagattgcaacaaagtaagaacataagcaaccaat
taaaatgacctatagagctgaacagaaaactctaaagagataaaaacagc
tttaaaaaaaccactttttaaaagtgctcaacatccttatccataagaga
aatgcaaatgaaaactatttccaccttagcccagtcaggactgtctgcca
taagaagtgcaaataattacaaatgctggtgtggaggtggtcaaagggga
acttgtagcattgccagtagactgggaacttgtccaaccactttggaaat
cagtctgaaggtttctcagaacgactagaattagaactaccctgtgaccc
agctatagcacctctgggcataaaccctatggacagtttttatactaccg
caaagatgcctgcatatccatgtccattattggttaattcacattatcta
ggaaatggaacccacttagctgtttatcaacggatgactggataagacac
gtgtggtgcatatgcacatatttgagctgaaaaacaaaatcaaagacaca
aaacaaaaactacagacaaactagggaaccagaaaaacagtctaccaagt
gaggtaaatcaaccatagaaaaacagacctgtatgtgctctctcattcat
ggatcaggagctttaaatcttttgtatgtttactttggaatagtgaggca
ggaaactaaaaaggggccttttggtggagaatatgtacgggagggggttc
gagaagaattattaggtaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112130279_112131432
seq2: B6Ng01-130D24.b_45_1185

seq1  GAATTCAACACCAGTTTTGACTTTGTACCATACTGGCTTATAGAGTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACCAGTTTTGACTTTGTACCATACTGGCTTATAGAGTCATG  50

seq1  CTCTGGTGATAAACTGCATAGATTTATTTTCAAGTAATAAATGTGCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGATAAACTGCATAGATTTATTTTCAAGTAATAAATGTGCACCA  100

seq1  TTGCCCAGCTACAGTCATTGTTTAACACTCAGTTGACCATTTGCTTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGCTACAGTCATTGTTTAACACTCAGTTGACCATTTGCTTTAGA  150

seq1  GAGGTGGTGTGTAGCTAACGTAAATGCTGTGAAGGTTTGGATTCTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTGTGTAGCTAACGTAAATGCTGTGAAGGTTTGGATTCTGTTGC  200

seq1  GTACTTAGATCTGCTTGTACTTGTTTTCTTCTCAGCTGATGATGTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAGATCTGCTTGTACTTGTTTTCTTCTCAGCTGATGATGTCATTG  250

seq1  CATCATCACAGCGGAACTGGAATTCCTACTGAAATTACACTTCACGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCACAGCGGAACTGGAATTCCTACTGAAATTACACTTCACGACAA  300

seq1  ACAAGACACAAGCCAAGAACGCCACTCACTGTGTTTTCCCACAAATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACACAAGCCAAGAACGCCACTCACTGTGTTTTCCCACAAATAAGT  350

seq1  GCTATAATGTCCTGTGAGAATTTTGTCTGTGCTTTTAGAGACATGGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATGTCCTGTGAGAATTTTGTCTGTGCTTTTAGAGACATGGGAAT  400

seq1  CATTTGACAGTATTTAATTTTCCAGTTGTGCTCCTTATATACAAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACAGTATTTAATTTTCCAGTTGTGCTCCTTATATACAAATAAAA  450

seq1  AAAATTAAAGGATCAAGACTAACCTTTGGGTGCCAATGAGTTAACCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAGGATCAAGACTAACCTTTGGGTGCCAATGAGTTAACCTGTT  500

seq1  CCTTCTTTAAATCCAGTGGTCTATATCTAGAATTTTCTAGAGTTTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAAATCCAGTGGTCTATATCTAGAATTTTCTAGAGTTTTCTAA  550

seq1  GTTGCTGTAACATTGAGGAAGTCCTCTGAAGGCACATTGAAATGCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTAACATTGAGGAAGTCCTCTGAAGGCACATTGAAATGCTGAGT  600

seq1  GTGTGGATGGTTTCTGGACCACCTAATGTACTATTGAAAAGATAATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATGGTTTCTGGACCACCTAATGTACTATTGAAAAGATAATTTAT  650

seq1  TTAAACTGGGAGAAAGAAAACCTTTTATAAATTAAATGTTCCATGTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGGGAGAAAGAAAACCTTTTATAAATTAAATGTTCCATGTTGTA  700

seq1  CTTTAAAGACATGGGGATATTTTAGCCTGCATATGTTGATTCCAACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGACATGGGGATATTTTAGCCTGCATATGTTGATTCCAACCACA  750

seq1  GTGTTCTAAATTACCATTAAATTTATTTACGTTTTGTTTATGAGTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAATTACCATTAAATTTATTTACGTTTTGTTTATGAGTGTTTG  800

seq1  CCCATATGTATGCATGTCCACCATGCGTGTCATTGGATGGTTGTGAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGTATGCATGTCCACCATGCGTGTCATTGGATGGTTGTGAGCCA  850

seq1  CCAGGTGGCTACTGGGAAGAGATCTCAGATTCTCTGCAAGAACAGCAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGCTACTGGGAAGAGATCTCAGATTCTCTGCAAGAACAGCAAGT  900

seq1  GCTCTTAGCCAGTGAGCCATCTCTCCAGCCCCTCCCTTATGGCGATTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGCCAGTGAGCCATCTCTCCAGCCCCTCCCTTATGGCGATTCTT  950

seq1  TATGCCAAATAAATCAAAATGCCAGGATGAATGAATTTATTTTCCCTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAAATAAATCAAAATGCCAGGATGAATGAATTTATTTTCCCTTTC  1000

seq1  ACTGGAAGATCTTATATGCTGGGTTGTTCTAGGGTGAGGGTTGTTACCTA  1050
      |||||| |||||||||||||||| |  |||||||||||||||| ||||||
seq2  ACTGGAGGATCTTATATGCTGGGGTTGTCTAGGGTGAGGGTTG-TACCTA  1049

seq1  GGCAATATGAAGGGACCTTGCTAAGTAACAGAAACCCACCTTCCTTGTTT  1100
      ||| ||||| ||||||| |||||||||||| ||| |||||| |||   ||
seq2  GGC-ATATG-AGGGACC-TGCTAAGTAACA-AAAACCACCTCCCT--GTT  1093

seq1  GTTCTATGATTTCTGCATCTATCCCCTGTATTTAGTGTATAATAAACAAG  1150
      |||| |||| |||||||||||| ||||||| ||||||  ||||||   ||
seq2  GTTC-ATGA-TTCTGCATCTAT-CCCTGTA-TTAGTGGTTAATAA--CAG  1137

seq1  CAAC  1154
      ||||
seq2  CAAC  1141