BAC Information

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BAC

Clone NameB6Ng01-130E08
Chromosome9 (Build37)
Map Location 105,538,352 - 105,638,146
singlet/doubletdoublet
Overlap genePik3r4
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981
Downstream geneE330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130E08.bB6Ng01-130E08.g
ACCDH931629DH931630
length1,0451,061
definitionDH931629|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E08, 5' end.DH931630|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,538,352 - 105,539,413)(105,637,079 - 105,638,146)
sequence
gaattcaagaaatccgcctgcctctgcctcccaagttctgggattaaaag
cgtgcgccaccaccgcccggtttaaagttgcctatttaagagagtttttc
ccaggctgtaattcacaagcacaggctcctgtgatcttgcagccccaccc
ccacccccatccagggggctgtgacgttcactgcatcgcagctgaagggg
aaaaggaaagtggagaccattcacctcttaatgacattgaccttagagtt
aaacatagagtttcaacttgaactttgtgtaatagaaaaaaacaagcaaa
acaacaacaacgacaacaaaaacaaaacagtcaaatgggcccacttagaa
gtaaaagatggtacagcaactctcagaaaaataatctctttctgcacaag
gggacatttggggtttgttgcttcaatatgcgtggctactggcttgagaa
tggacctttgcttgctggctctgttaaattctactcataagtgttataca
agattatcctcagagccaaactgccaccattttcaggacttctggtactg
tgtatgaggaaaagctcatcacagctaggcctgttgtctgtcagtgttcc
ctcattgaaggaaggggcaggttgggccatgggaccctcatatgagtatt
tacctggccctcccaacccttactgtatattgagtatattgggagggagg
gctaaagaatacaggtagggaagggtaaggccagggcttcatctataccg
aggtgtcatccctgcagggtgcatgtcttccactctggctactttaagtc
acctacgctcctgcatgtgacccctcacccactactttctaaacaagcct
agtaaactcaccggttcccctctggggaactttggtggaattgaacctca
gtttggtattaagaccttagaagagggagggtaggcattgttcatgcctc
tctcaggaaggagtcttagcaacattagcaaattgtacagcaacttagat
ttttatttttttaaacactactaatgatcatctgcatcaacaaaa
gaattcttcctagctaacaccaggttttggaatggccaatgtccacacta
ctccttgttctgagtgtgctaagagtgtgttaggatgccggtcctgatct
agtaggtctaggttgaggtttgggatgctgcatgttcaatcagtctcctc
ctgatactgatgctgcagatctggaccacacagtgagtagcaaggtcctg
tgtgatctgttccctgtctatagccagcataatatatatgtatctgtagg
tctcttttgacatgctgcaagctccatttatgttagtgccttgcgagtat
gctggatctacagtccctggcacaacagagctcaattcctttatggaatg
aatcaagcagtaaatgaatgaatgagacccagttgggactttcaccctct
gctaatagcagtaccaaggggaatgcattacttaacatgaattaactaaa
ccctggcagaggcccaacgtttaagtcgttgtgctcatcatgagaatatt
taacaggctatttgcataaacttgtaaaccatggcaaactgttttaaagt
acattaatatctgttcctgacgatgtttgttcctggttttgatgaaagtg
ctcttttcgaatgcatgaaaactccataatttcatagcagaactaaacca
atgataaaaaaaaaaccaaaacctcttctgcattcacatctttgaatcat
tagaagctggctgggcaccacaaatggagattttttattttaaaaaacac
agtaagtacaaaggaaaatatatatcgatctatatctcatctgttgatat
caaatattgatgtgggtatgtagatgatttgaaatccaaagttctggggt
ccaagtgtattcaaggctgttactgggtagtttttccatgtgccctgggg
ggcaccttcatccatgggttctttaatctcgcttggcagaagtggcccag
tcataaatcaccaagctcttggcatgccagctggtaaaggcaccacaccc
ctctcaacagccatcatttttctgctgaaaaccttgcctttctttctctg
cgctggctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_105538352_105539413
seq2: B6Ng01-130E08.b_49_1093

seq1  GAATTCAAGAAATCCGCCTGCCTCTGCCTCCCAAGTTCTGGGATTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAATCCGCCTGCCTCTGCCTCCCAAGTTCTGGGATTAAAAG  50

seq1  CGTGCGCCACCACCGCCCGGTTTAAAGTTGCCTATTTAAGAGAGTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGCCACCACCGCCCGGTTTAAAGTTGCCTATTTAAGAGAGTTTTTC  100

seq1  CCAGGCTGTAATTCACAAGCACAGGCTCCTGTGATCTTGCAGCCCCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTAATTCACAAGCACAGGCTCCTGTGATCTTGCAGCCCCACCC  150

seq1  CCACCCCCATCCAGGGGGCTGTGACGTTCACTGCATCGCAGCTGAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCATCCAGGGGGCTGTGACGTTCACTGCATCGCAGCTGAAGGGG  200

seq1  AAAAGGAAAGTGGAGACCATTCACCTCTTAATGACATTGACCTTAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGTGGAGACCATTCACCTCTTAATGACATTGACCTTAGAGTT  250

seq1  AAACATAGAGTTTCAACTTGAACTTTGTGTAATAGAAAAAAACAAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGAGTTTCAACTTGAACTTTGTGTAATAGAAAAAAACAAGCAAA  300

seq1  ACAACAACAACGACAACAAAAACAAAACAGTCAAATGGGCCCACTTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACGACAACAAAAACAAAACAGTCAAATGGGCCCACTTAGAA  350

seq1  GTAAAAGATGGTACAGCAACTCTCAGAAAAATAATCTCTTTCTGCACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGATGGTACAGCAACTCTCAGAAAAATAATCTCTTTCTGCACAAG  400

seq1  GGGACATTTGGGGTTTGTTGCTTCAATATGCGTGGCTACTGGCTTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTTGGGGTTTGTTGCTTCAATATGCGTGGCTACTGGCTTGAGAA  450

seq1  TGGACCTTTGCTTGCTGGCTCTGTTAAATTCTACTCATAAGTGTTATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTTGCTTGCTGGCTCTGTTAAATTCTACTCATAAGTGTTATACA  500

seq1  AGATTATCCTCAGAGCCAAACTGCCACCATTTTCAGGACTTCTGGTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCCTCAGAGCCAAACTGCCACCATTTTCAGGACTTCTGGTACTG  550

seq1  TGTATGAGGAAAAGCTCATCACAGCTAGGCCTGTTGTCTGTCAGTGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGGAAAAGCTCATCACAGCTAGGCCTGTTGTCTGTCAGTGTTCC  600

seq1  CTCATTGAAGGAAGGGGCAGGTTGGGCCATGGGACCCTCATATGAGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAAGGAAGGGGCAGGTTGGGCCATGGGACCCTCATATGAGTATT  650

seq1  TACCTGGCCCTCCCAACCCTTACTGTATATTGAGTATATTGGGAGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGCCCTCCCAACCCTTACTGTATATTGAGTATATTGGGAGGGAGG  700

seq1  GCTAAAGAATACAGGTAGGGAAGGGTAAGGCCAGGGCTTCATCTATACCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGAATACAGGTAGGGAAGGGTAAGGCCAGGGCTTCATCTATACCG  750

seq1  AGGTGTCATCCCTGCAGGGTGCATGTCTTCCACTCTGGCTACTTTAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTGTCATCCCTGCAGGGTGCATGTCTTCCACTCTGGCTACTTTAA-GT  799

seq1  CACCTACGCTCCTGCATGTGACCCCTCACCCACTACTTTCTAAACAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACGCTCCTGCATGTGACCCCTCACCCACTACTTTCTAAACAAGCC  849

seq1  TAGTAAACTCACCGGTTCCCCTCTGGGGAACTTTGGTGGAATTGAACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACTCACCGGTTCCCCTCTGGGGAACTTTGGTGGAATTGAACCTC  899

seq1  AGTTTGGTATTAAGACCTTAGGAAGAGGGAGGGGTAGGCATTGTTCATGC  950
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  AGTTTGGTATTAAGACCTTA-GAAGAGGGA-GGGTAGGCATTGTTCATGC  947

seq1  CTCTCTCAGGAAAGGAGTCTTTAGCAACAATTTAGCAAAATTGTAACAAG  1000
      |||||||||| |||||||| |||||||||  ||||| ||||||||   ||
seq2  CTCTCTCAGG-AAGGAGTC-TTAGCAACA--TTAGC-AAATTGTA--CAG  990

seq1  CAACTTAGATTTTTTATTTTTTTTAAAACACTACTAAATGAATCATCTGC  1050
      ||||||||| |||||||||||||  |||||||||| |||| |||||||||
seq2  CAACTTAGA-TTTTTATTTTTTT--AAACACTACT-AATG-ATCATCTGC  1035

seq1  ATCAAAACAAAA  1062
      |||  |||||||
seq2  ATC--AACAAAA  1045

seq1: chr9_105637079_105638146
seq2: B6Ng01-130E08.g_69_1129 (reverse)

seq1  AAAAGCAA--GCAGAGAAAGAAAAGCAGGGTTTTCAGCCAGAAAAATGGA  48
      |||||| |  ||||||||||||| ||| ||||||||| ||||||||||  
seq2  AAAAGCCAGCGCAGAGAAAGAAAGGCAAGGTTTTCAG-CAGAAAAATG--  47

seq1  ATGGCTGGTG-GAGGGGTGTGGTGCCTTTGACCAGCTGGCAATGCCAAGG  97
      ||||||| || |||||||||||||||||| |||||||||| |||||||| 
seq2  ATGGCTGTTGAGAGGGGTGTGGTGCCTTT-ACCAGCTGGC-ATGCCAAGA  95

seq1  GCTGGGTGATTTATGACTGGGTCACTTCTTGCCAAAGCGAGATTAAAGGG  147
      ||| ||||||||||||||||| |||||| |||| ||||||||||||| | 
seq2  GCTTGGTGATTTATGACTGGGCCACTTC-TGCC-AAGCGAGATTAAA-GA  142

seq1  ACCCATGGATGAAGGTGCCCCACAGGGCACATGGAAAAACTACTCCAGTA  197
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  ACCCATGGATGAAGGTGCCCCCCAGGGCACATGGAAAAACTAC-CCAGTA  191

seq1  ACAGCCTTGGATACCACTTTGGACCCCAGATCTTTGGATTTCAATTCATC  247
      ||||||||| ||| ||| |||||||||||| ||||||||||||| |||||
seq2  ACAGCCTTGAATA-CAC-TTGGACCCCAGAACTTTGGATTTCAAATCATC  239

seq1  TACATACCCACATCAATATTTGATATCAACAGATGAGATATAGATCGATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACCCACATCAATATTTGATATCAACAGATGAGATATAGATCGATA  289

seq1  TATATTTTCCTTTGTACTTACTGTGTTTTTTTAAAATAAAAATCTCCATT  347
      ||||||||||||||||||||||||||||||| |||  |||||||||||||
seq2  TATATTTTCCTTTGTACTTACTGTGTTTTTTAAAATAAAAAATCTCCATT  339

seq1  TGTGGTG-CCAGCCAGCTTCTAATGATTCAAAGATGTGAATGCAGAAGAG  396
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCCCAGCCAGCTTCTAATGATTCAAAGATGTGAATGCAGAAGAG  389

seq1  GTTTTGGTTTTTTTTTTATCATTGGTTTAGTTCTGCTATGAAATTATGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTTTTTTTTATCATTGGTTTAGTTCTGCTATGAAATTATGGA  439

seq1  GTTTTCATGCATTCGAAAAGAGCACTTTCATCAAAACCAGGAACAAACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGCATTCGAAAAGAGCACTTTCATCAAAACCAGGAACAAACAT  489

seq1  CGTCAGGAACAGATATTAATGTACTTTAAAACAGTTTGCCATGGTTTACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGAACAGATATTAATGTACTTTAAAACAGTTTGCCATGGTTTACA  539

seq1  AGTTTATGCAAATAGCCTGTTAAATATTCTCATGATGAGCACAACGACTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGCAAATAGCCTGTTAAATATTCTCATGATGAGCACAACGACTT  589

seq1  AAACGTTGGGCCTCTGCCAGGGTTTAGTTAATTCATGTTAAGTAATGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTGGGCCTCTGCCAGGGTTTAGTTAATTCATGTTAAGTAATGCAT  639

seq1  TCCCCTTGGTACTGCTATTAGCAGAGGGTGAAAGTCCCAACTGGGTCTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGGTACTGCTATTAGCAGAGGGTGAAAGTCCCAACTGGGTCTCA  689

seq1  TTCATTCATTTACTGCTTGATTCATTCCATAAAGGAATTGAGCTCTGTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTTACTGCTTGATTCATTCCATAAAGGAATTGAGCTCTGTTG  739

seq1  TGCCAGGGACTGTAGATCCAGCATACTCGCAAGGCACTAACATAAATGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGACTGTAGATCCAGCATACTCGCAAGGCACTAACATAAATGGA  789

seq1  GCTTGCAGCATGTCAAAAGAGACCTACAGATACATATATATTATGCTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGCATGTCAAAAGAGACCTACAGATACATATATATTATGCTGGC  839

seq1  TATAGACAGGGAACAGATCACACAGGACCTTGCTACTCACTGTGTGGTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAGGGAACAGATCACACAGGACCTTGCTACTCACTGTGTGGTCC  889

seq1  AGATCTGCAGCATCAGTATCAGGAGGAGACTGATTGAACATGCAGCATCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCAGCATCAGTATCAGGAGGAGACTGATTGAACATGCAGCATCC  939

seq1  CAAACCTCAACCTAGACCTACTAGATCAGGACCGGCATCCTAACACACTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCAACCTAGACCTACTAGATCAGGACCGGCATCCTAACACACTC  989

seq1  TTAGCACACTCAGAACAAGGAGTAGTGTGGACATTGGCCATTCCAAAACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACACTCAGAACAAGGAGTAGTGTGGACATTGGCCATTCCAAAACC  1039

seq1  TGGTGTTAGCTAGGAAGAATTC  1068
      ||||||||||||||||||||||
seq2  TGGTGTTAGCTAGGAAGAATTC  1061