BAC Information

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BAC

Clone NameB6Ng01-130E20
Chromosome9 (Build37)
Map Location 107,135,635 - 107,279,784
singlet/doubletdoublet
Overlap geneMapkapk3, Cish, Hemk1, 6430571L13Rik
Upstream geneAlas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3
Downstream geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130E20.bB6Ng01-130E20.g
ACCDH931653DH931654
length1,1611,145
definitionDH931653|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E20, 5' end.DH931654|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,135,635 - 107,136,819)(107,278,640 - 107,279,784)
sequence
gaattccttctccaaagtatcctgaccgtcctcatcctcacctggactat
agccaccacctcatggtctatggactctttcatctacctatgaaggctgc
cagtcctccccagaaagtgtctgttctgtgaacaatttaatttctcaata
atcagatacactatgagagtagaagggggatcaggaaccaaaagcaagac
aacagagatgccctggtttatttagctagttcttccagggacatggacct
cagtccgatggtagtcatgaagggcgttccacagaatggagccatgttcc
catgaagctctctccagagagctctgaccagccagcacagccaagcaaca
caggtcttctgaacacccatgaaactcatttcatccactacttccatccc
ttggctggtatacatgatggcggttacagagcctaaggtctggttttccc
aacgtttgtgcccatttcccaacagagacaatccactgtactgccgccca
tctcagctctgaggtcagagaacactaattccaacaagtgacaagagaag
aaagggggccaaggaggatgaaggagacatttggttatggtctggactcg
tttgatttagctgtttgcactaaatttaggtcgttttcttggaataacac
gaaaggacacagcatgttgtggagagtcagacctcagcagaactgtgaac
ctgtgatgtccccatagcatgtgatgtccccatagcatgtgatgtcccca
tagcatgtgatccaagccctcccttcctcgggctcttagtccacttgaca
acccccaacacacacgcttgcatctgaaaactcagaatcctcactgactt
cctccttcttgttacccagtttgttgtatccctgccagtagtacccagcc
gggctcttgctcttgctttggaagcctctgtctcccatttccagcctgcc
ctgctccacagttcctaccaccccagaagacccgcttgtcagtagcctca
ccgactctctttcactatctccatctgactcaaaagagactgggcacccc
agtccttgatgtcatgtaattatttgattctcgtccctcaagatctattt
tcaagctatcctaacagctctctaagaaccctcaggctatcgaatcaaat
tggtcatcccc
gaattcactttgtagaccaggctgacctcgaactcagaaatccgactgcc
tctgcttcccgagtgctgggattatcggctcttttacagctttcttctca
caaagggttgaggtggagatgaccctctgactggaacacatacttagtcc
ttagttggggaggaagagttctggcacataccaggggagtctgggattgc
caggagtgaagtcagggttggtcattgcccctagttgagcctgagtcctc
tgaaacaagatggttttagggattaaacgtggccttgcccgtgctcagta
aaagagcctttctaagctgagtaactagactcactcctccaaagctcagg
aagctgaggcaggaggattgcttcaggcttgaggccagcctgggctacag
tatgagattctgtcttaaagcaaacaaataaaaccaaccaaggaaacact
aataaaacacctttccgttctgccccttcttgtctttctgtagcagcaca
gaccaaacaaggtgagtctaacctcagctaccaatgattacagccaatcc
tctttcctatgctggccactggtacgtcctgcttcatctccccaacagta
aggaggcctcatagacgaatccctattaaatcagaagtcactctcatcct
ttggacctcagagtccccattgggaaaatgactttagggtctgggtaaat
gctgacattttggaccaacactgggactgcccatcccaagccccaggagc
ccccacactctccagcatcctctgaacagccccagaaagactgccacaat
cgtgggttcagtctaccctgcctttcttagcaatgagttctgagcgcatc
ccatctcttttgggggctaagtggatagtccctgtttttatgaatgtgca
gaagcccaatggcttgtgagaactcagcatctactgtccagtaagccacc
gctagggaaaggattgaattttgcccgggcactctagaacatttatgatt
aggttggagcagaggcacaaagcgtttggccaaactagagaaaaaatcag
attagaagaccagaattagaatcatccagaggaaggctgaaacagctact
tggtttgaaaccgatggcacgattacagtgcatattatcgctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107135635_107136819
seq2: B6Ng01-130E20.b_49_1209

seq1  GAATTCCTTCTCCAAAGTATCCTGACCGTCCTCATCCTCACCTGGACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCCAAAGTATCCTGACCGTCCTCATCCTCACCTGGACTAT  50

seq1  AGCCACCACCTCATGGTCTATGGACTCTTTCATCTACCTATGAAGGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACCTCATGGTCTATGGACTCTTTCATCTACCTATGAAGGCTGC  100

seq1  CAGTCCTCCCCAGAAAGTGTCTGTTCTGTGAACAATTTAATTTCTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCCCCAGAAAGTGTCTGTTCTGTGAACAATTTAATTTCTCAATA  150

seq1  ATCAGATACACTATGAGAGTAGAAGGGGGATCAGGAACCAAAAGCAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATACACTATGAGAGTAGAAGGGGGATCAGGAACCAAAAGCAAGAC  200

seq1  AACAGAGATGCCCTGGTTTATTTAGCTAGTTCTTCCAGGGACATGGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGATGCCCTGGTTTATTTAGCTAGTTCTTCCAGGGACATGGACCT  250

seq1  CAGTCCGATGGTAGTCATGAAGGGCGTTCCACAGAATGGAGCCATGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCGATGGTAGTCATGAAGGGCGTTCCACAGAATGGAGCCATGTTCC  300

seq1  CATGAAGCTCTCTCCAGAGAGCTCTGACCAGCCAGCACAGCCAAGCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCTCTCTCCAGAGAGCTCTGACCAGCCAGCACAGCCAAGCAACA  350

seq1  CAGGTCTTCTGAACACCCATGAAACTCATTTCATCCACTACTTCCATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTCTGAACACCCATGAAACTCATTTCATCCACTACTTCCATCCC  400

seq1  TTGGCTGGTATACATGATGGCGGTTACAGAGCCTAAGGTCTGGTTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGTATACATGATGGCGGTTACAGAGCCTAAGGTCTGGTTTTCCC  450

seq1  AACGTTTGTGCCCATTTCCCAACAGAGACAATCCACTGTACTGCCGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTGTGCCCATTTCCCAACAGAGACAATCCACTGTACTGCCGCCCA  500

seq1  TCTCAGCTCTGAGGTCAGAGAACACTAATTCCAACAAGTGACAAGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTCTGAGGTCAGAGAACACTAATTCCAACAAGTGACAAGAGAAG  550

seq1  AAAGGGGGCCAAGGAGGATGAAGGAGACATTTGGTTATGGTCTGGACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGCCAAGGAGGATGAAGGAGACATTTGGTTATGGTCTGGACTCG  600

seq1  TTTGATTTAGCTGTTTGCACTAAATTTAGGTCGTTTTCTTGGAATAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTAGCTGTTTGCACTAAATTTAGGTCGTTTTCTTGGAATAACAC  650

seq1  GAAAGGACACAGCATGTTGTGGAGAGTCAGACCTCAGCAGAACTGTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACACAGCATGTTGTGGAGAGTCAGACCTCAGCAGAACTGTGAAC  700

seq1  CTGTGATGTCCCCATAGCATGTGATGTCCCCATAGCATGTGATGTCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGTCCCCATAGCATGTGATGTCCCCATAGCATGTGATGTCCCCA  750

seq1  TAGCATGTGATCCAAGCCCTCCCTTCCTCGGGCTCTTAGTCCACTTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTGATCCAAGCCCTCCCTTCCTCGGGCTCTTAGTCCACTTGACA  800

seq1  ACCCCCAACACACAACGCTTGCATCTGAAAACTCAGAATCCTCACTGACT  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAACACAC-ACGCTTGCATCTGAAAACTCAGAATCCTCACTGACT  849

seq1  TCCTCCTTCTTGTTACCCAGTTTGTTGTATCCCTGCCAGTAGTACCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCTTGTTACCCAGTTTGTTGTATCCCTGCCAGTAGTACCCAGC  899

seq1  CGGGCTCTTGCTCTTGCTTTGGAAGCCTCTGTCTCCCATTTCCAGCCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTCTTGCTCTTGCTTTGGAAGCCTCTGTCTCCCATTTCCAGCCTGC  949

seq1  CCTGCTCCACAGGTTCCTACCACCCCAGGAAGACCCGCTTGTCAGTAGCC  1000
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  CCTGCTCCACA-GTTCCTACCACCCCA-GAAGACCCGCTTGTCAGTAGCC  997

seq1  TCACCGACTCCTCTTCCACTTATCTCCATCTGACTTCAAAAAGAGAACTG  1050
      ||||||||| ||||| ||| |||||||||||||||   ||||||| ||||
seq2  TCACCGACT-CTCTTTCAC-TATCTCCATCTGACT--CAAAAGAG-ACTG  1042

seq1  TGCACCCCAGGTCCTTTGATGTCAATGTAATTTATTTGATTCTCGGCCCC  1100
       |||||||| |||| |||||||| |||||| ||||||||||||| | |||
seq2  GGCACCCCA-GTCC-TTGATGTC-ATGTAA-TTATTTGATTCTC-GTCCC  1087

seq1  TCAAGATCTAATTTCTAAGCTTATCACCTAACAAGCTCTCCTAGAACCCT  1150
      |||||||||| |||| |||| |||  |||||| |||||||  ||||||||
seq2  TCAAGATCTATTTTC-AAGC-TAT--CCTAAC-AGCTCTCTAAGAACCCT  1132

seq1  CCAGGGCTATCTGAATTCCAAATATTGGCATCCCC  1185
      |   ||||||| ||||  ||||| | | |||||||
seq2  C--AGGCTATC-GAAT--CAAAT-TGGTCATCCCC  1161

seq1: chr9_107278640_107279784
seq2: B6Ng01-130E20.g_66_1210 (reverse)

seq1  CTTAGCGATAATACG-ACTGTAACCGTGCCCTCTGTCTCCAACCCAGTAG  49
      ||||||||||||| | ||||||| |||||| || || || |||| |||||
seq2  CTTAGCGATAATATGCACTGTAATCGTGCCATCGGTTTCAAACCAAGTAG  50

seq1  CTGTTCTCAGCTTTCCTCTGGATGA-TCTATATCTGGTCTCCTATTCTGA  98
      ||||| ||||| ||||||||||||| ||||  |||||||| ||| |||||
seq2  CTGTT-TCAGCCTTCCTCTGGATGATTCTAATTCTGGTCTTCTAATCTGA  99

seq1  TTTTTTTCTCTTAGTTTGCCCAAACGCTTTGTGCCTCTGCTCCAACCTAA  148
       ||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  -TTTTTTCTC-TAGTTTGGCCAAACGCTTTGTGCCTCTGCTCCAACCTAA  147

seq1  TCATAAATGTTCTAGAGTGCCCGGGC-AAATTCAATCCTTTCCCCTAGCG  197
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TCATAAATGTTCTAGAGTGCCCGGGCAAAATTCAATCCTTT-CCCTAGCG  196

seq1  GTGGCCTTACTGGACAGTAGATGCTGAGTTCTCACATGCCATTGGGCTTC  247
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGG-CTTACTGGACAGTAGATGCTGAGTTCTCACAAGCCATTGGGCTTC  245

seq1  TGCACATTCAT-AAAACAGGGACTATCCAC-TAGCCCCCAAAAGAGATGG  295
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  TGCACATTCATAAAAACAGGGACTATCCACTTAGCCCCCAAAAGAGATGG  295

seq1  GATGCGCTCAGAACTCATTGCTAAGAAAGGCAGGGTAGACTGAACCCACG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGCTCAGAACTCATTGCTAAGAAAGGCAGGGTAGACTGAACCCACG  345

seq1  ATTGTGGCAGTCTTTCTGGGGCTGTTCAGAGGATGCTGGAGAGTGTGGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCAGTCTTTCTGGGGCTGTTCAGAGGATGCTGGAGAGTGTGGGG  395

seq1  GCTCCTGGGGCTTGGGATGGGCAGTCCCAGTGTTGGTCCAAAATGTCAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGGCTTGGGATGGGCAGTCCCAGTGTTGGTCCAAAATGTCAGC  445

seq1  ATTTACCCAGACCCTAAAGTCATTTTCCCAATGGGGACTCTGAGGTCCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCAGACCCTAAAGTCATTTTCCCAATGGGGACTCTGAGGTCCAA  495

seq1  AGGATGAGAGTGACTTCTGATTTAATAGGGATTCGTCTATGAGGCCTCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGAGTGACTTCTGATTTAATAGGGATTCGTCTATGAGGCCTCCT  545

seq1  TACTGTTGGGGAGATGAAGCAGGACGTACCAGTGGCCAGCATAGGAAAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGGGGAGATGAAGCAGGACGTACCAGTGGCCAGCATAGGAAAGA  595

seq1  GGATTGGCTGTAATCATTGGTAGCTGAGGTTAGACTCACCTTGTTTGGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCTGTAATCATTGGTAGCTGAGGTTAGACTCACCTTGTTTGGTC  645

seq1  TGTGCTGCTACAGAAAGACAAGAAGGGGCAGAACGGAAAGGTGTTTTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCTACAGAAAGACAAGAAGGGGCAGAACGGAAAGGTGTTTTATT  695

seq1  AGTGTTTCCTTGGTTGGTTTTATTTGTTTGCTTTAAGACAGAATCTCATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCCTTGGTTGGTTTTATTTGTTTGCTTTAAGACAGAATCTCATA  745

seq1  CTGTAGCCCAGGCTGGCCTCAAGCCTGAAGCAATCCTCCTGCCTCAGCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCCAGGCTGGCCTCAAGCCTGAAGCAATCCTCCTGCCTCAGCTT  795

seq1  CCTGAGCTTTGGAGGAGTGAGTCTAGTTACTCAGCTTAGAAAGGCTCTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTTTGGAGGAGTGAGTCTAGTTACTCAGCTTAGAAAGGCTCTTT  845

seq1  TACTGAGCACGGGCAAGGCCACGTTTAATCCCTAAAACCATCTTGTTTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCACGGGCAAGGCCACGTTTAATCCCTAAAACCATCTTGTTTCA  895

seq1  GAGGACTCAGGCTCAACTAGGGGCAATGACCAACCCTGACTTCACTCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCAGGCTCAACTAGGGGCAATGACCAACCCTGACTTCACTCCTG  945

seq1  GCAATCCCAGACTCCCCTGGTATGTGCCAGAACTCTTCCTCCCCAACTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCAGACTCCCCTGGTATGTGCCAGAACTCTTCCTCCCCAACTAA  995

seq1  GGACTAAGTATGTGTTCCAGTCAGAGGGTCATCTCCACCTCAACCCTTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAGTATGTGTTCCAGTCAGAGGGTCATCTCCACCTCAACCCTTTG  1045

seq1  TGAGAAGAAAGCTGTAAAAGAGCCGATAATCCCAGCACTCGGGAAGCAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAAAGCTGTAAAAGAGCCGATAATCCCAGCACTCGGGAAGCAGA  1095

seq1  GGCAGTCGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAATTC  1145