BAC Information

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BAC

Clone NameB6Ng01-130F03
Chromosome9 (Build37)
Map Location 113,195,212 - 113,348,007
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620760, LOC100043800, EG622110, LOC100039391, LOC100043801
Downstream geneLOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130F03.bB6Ng01-130F03.g
ACCDH931667DH931668
length1,174961
definitionDH931667|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F03, 5' end.DH931668|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,195,212 - 113,196,389)(113,347,037 - 113,348,007)
sequence
gaattcagtctccagggaattcatctccatgctctggtggagatgtcacc
cccacatgcagaacatgctaaggccagtgtgacacatctatcttccattc
tgttccttcagccccttgcctgcttcccatctccatgctcactgacacta
agcattgacattactcaacaaacccaagcaggaacctgggaggtgcagtg
gtggccgtccagctgtgctgtgatctgtgaagttggaagctccagcctgc
ttgggagccaggccaattgaagcccagtttagattagtagggtagaacag
aacagctcaccttcctaatgcaaaccactttagctgggcagcagcatgta
actgagttctctgcaggaaacgttctctgacataaaactacatatagtct
tccctcctccaccctcatggtcatcattctcttacctcacccctctcaga
gtcctccctcccatccttctccctctcagagtcctccttcctatctgttc
cctcttagagtcctccctcccaccctgatccctctgagcccttcctccca
cctgctccctctctgagtcctctctcccacagtgctccctctctaagtcc
tccctcccatcccacctccactcagagtcctccctctcacagctttatcc
ccatcagagtcctcccctgacttttccccatcatggtccttgtcctcaca
gccttctccctcacaatgaattctctctcgattctctctacctagtccat
ttccccaagtcccttcccatgacaatcctcgtcctgtgaggctcccccac
ccagaaatcttccccgatataatccctatctcaatcccttgccctcacat
gagcccttcttcacagtcctctcattaacggttcaaccacaattctctgc
cacaatcctccttacagttctctccctcagtcctcctcctcaaagtcctc
ctgagagatttctttcaaggcagtcctccctcacagaatctccctttaca
atccatttcatcataatcctcctcacatcttcttcttcctcatagtcctc
cctcactggtgctcctccttacagtccttcatcccagttcttcacagtct
ccacagatcctcccagatcacatttctttgtctcaagcaggtaaagggta
aaccttggaggcctcggatgctcc
gaattcctctggagagttgatgtgggcctttgattctgttgagaaccttg
actgtcgccagacgcccaaccagccccaacatcaggaaggagaaaagaaa
gtggctggcctgcttctggacagctcacgttgtttattcctgagaagtga
gacgaaatggagtgttgtcatgatttgaaaacattcctttaaatttgaag
tccctaagcccagaggcacatggaacattttgcctcaccaatgaagctct
agcctcgttcataagcaaatgcaacaaaaacccgagaacaaaaggcacct
gattaccatggcaacagtcagtgcttctcaattggcctatgttagcttac
agagacagaaagtaagacctgtgcaggctaaagtgttaagactcaaaaag
cagtatttaaaatgtggtgggaagtcacagtctgcgctgattaaaataac
gttggaattattcgcaaattaaacattgtccaaaggtgtctattgaaaag
tatcatttgagaacctggtttaggaaaagtgtgttggggccctctgatgg
ctgatcttggctgtcaacttgacacacctgggaagagagacttccagttg
aggaattgtccccatcagattgtaaggctcatacctccctctttccctct
ctccctccctccctccctcccttccatctttcttttcctttacctttctt
tttatgagacagcgtctcaatatgtagctctggctgtcctggagtagatc
tgtcactttggaggatcagacaggccttgaacaacagacatctgcctcca
aattgctgggattaaaagaatgaaccatcatgcctgtctgtttttttttt
ttttttttttgatgtaaaagggctccggtcactggggtggtttaatccct
aggcaagatgctgggcttataagaaaggcagcggttgggattctgctttt
cattgagtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_113195212_113196389
seq2: B6Ng01-130F03.b_48_1221

seq1  GAATTCAGTCTCCAGGGAATTCATCTCCATGCTCTGGTGGAGATGTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCCAGGGAATTCATCTCCATGCTCTGGTGGAGATGTCACC  50

seq1  CCCACATGCAGAACATGCTAAGGCCAGTGTGACACATCTATCTTCCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGCAGAACATGCTAAGGCCAGTGTGACACATCTATCTTCCATTC  100

seq1  TGTTCCTTCAGCCCCTTGCCTGCTTCCCATCTCCATGCTCACTGACACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTCAGCCCCTTGCCTGCTTCCCATCTCCATGCTCACTGACACTA  150

seq1  AGCATTGACATTACTCAACAAACCCAAGCAGGAACCTGGGAGGTGCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGACATTACTCAACAAACCCAAGCAGGAACCTGGGAGGTGCAGTG  200

seq1  GTGGCCGTCCAGCTGTGCTGTGATCTGTGAAGTTGGAAGCTCCAGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCGTCCAGCTGTGCTGTGATCTGTGAAGTTGGAAGCTCCAGCCTGC  250

seq1  TTGGGAGCCAGGCCAATTGAAGCCCAGTTTAGATTAGTAGGGTAGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCCAGGCCAATTGAAGCCCAGTTTAGATTAGTAGGGTAGAACAG  300

seq1  AACAGCTCACCTTCCTAATGCAAACCACTTTAGCTGGGCAGCAGCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCACCTTCCTAATGCAAACCACTTTAGCTGGGCAGCAGCATGTA  350

seq1  ACTGAGTTCTCTGCAGGAAACGTTCTCTGACATAAAACTACATATAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTCTCTGCAGGAAACGTTCTCTGACATAAAACTACATATAGTCT  400

seq1  TCCCTCCTCCACCCTCATGGTCATCATTCTCTTACCTCACCCCTCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTCCACCCTCATGGTCATCATTCTCTTACCTCACCCCTCTCAGA  450

seq1  GTCCTCCCTCCCATCCTTCTCCCTCTCAGAGTCCTCCTTCCTATCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCCTCCCATCCTTCTCCCTCTCAGAGTCCTCCTTCCTATCTGTTC  500

seq1  CCTCTTAGAGTCCTCCCTCCCACCCTGATCCCTCTGAGCCCTTCCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGAGTCCTCCCTCCCACCCTGATCCCTCTGAGCCCTTCCTCCCA  550

seq1  CCTGCTCCCTCTCTGAGTCCTCTCTCCCACAGTGCTCCCTCTCTAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCTCTCTGAGTCCTCTCTCCCACAGTGCTCCCTCTCTAAGTCC  600

seq1  TCCCTCCCATCCCACCTCCACTCAGAGTCCTCCCTCTCACAGCTTTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCATCCCACCTCCACTCAGAGTCCTCCCTCTCACAGCTTTATCC  650

seq1  CCATCAGAGTCCTCCCCTGACTTTTCCCCATCATGGTCCTTGTCCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAGTCCTCCCCTGACTTTTCCCCATCATGGTCCTTGTCCTCACA  700

seq1  GCCTTCTCCCTCACAATGAATTCTCTCTCGATTCTCTCTACCTAGTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCCCTCACAATGAATTCTCTCTCGATTCTCTCTACCTAGTCCAT  750

seq1  TTCCCCAAGTCCCTTCCCATGACAATCCTCGTCCTGTGAGGCTCCCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAGTCCCTTCCCATGACAATCCTCGTCCTGTGAGGCTCCCCCAC  800

seq1  CCAGAAATCTTCCCCGATATAATCCCTATCTCAATCCCTTGCCCTCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCTTCCCCGATATAATCCCTATCTCAATCCCTTGCCCTCACAT  850

seq1  GAGCCCTTCTTCACAGTCCTCTCATTAACGGTTCCAACCACAATTCTCTG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGCCCTTCTTCACAGTCCTCTCATTAACGGTT-CAACCACAATTCTCTG  899

seq1  CCACAATCCTCCTTACAGTTCTCTCCCTCAGTCCTCCTCCTCACAGTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCACAATCCTCCTTACAGTTCTCTCCCTCAGTCCTCCTCCTCAAAGTCCT  949

seq1  CCTGAGAGATCTCTTTCAAGGCAGTCCTCCCTCACAG-ATCTCCCCTTTA  999
      |||||||||| |||||||||||||||||||||||||| |||| |||||||
seq2  CCTGAGAGATTTCTTTCAAGGCAGTCCTCCCTCACAGAATCT-CCCTTTA  998

seq1  CAATCCATTTCATCATAATCCTCCTTCACAATCTTCCTCTTCCTCATAGT  1049
      |||||||||||||||||||||||| |||| |||||| |||||||||||||
seq2  CAATCCATTTCATCATAATCCTCC-TCAC-ATCTTCTTCTTCCTCATAGT  1046

seq1  CCTCCCCTCACT-GTGCTCCTCCTTACAGTCCTTCATCCACAGTCCTTCA  1098
      ||| |||||||| |||||||||||||||||||||||||| |||| |||||
seq2  CCT-CCCTCACTGGTGCTCCTCCTTACAGTCCTTCATCC-CAGTTCTTCA  1094

seq1  CAGTCCTCCACAG-TCCTCCACAG-TCAC-TTTCTTTGTCTCAAAGGCAG  1145
      |||| |||||||| |||||| ||| |||| ||||||||||||||  ||||
seq2  CAGT-CTCCACAGATCCTCC-CAGATCACATTTCTTTGTCTCAA--GCAG  1140

seq1  GTTAAGGGT-AACCCTGGAGGCCTCGGATGCTCC  1178
      || |||||| |||| |||||||||||||||||||
seq2  GTAAAGGGTAAACCTTGGAGGCCTCGGATGCTCC  1174

seq1: chr9_113347037_113348007
seq2: B6Ng01-130F03.g_69_1029 (reverse)

seq1  GGCACTCAAATGGAAAAGCAGAAACTCACAACCAGCTGCCTTTCTTATAT  50
      |||||||||   |||||||||||  || ||||| ||||||||||||||| 
seq2  GGCACTCAA--TGAAAAGCAGAA--TCCCAACC-GCTGCCTTTCTTATA-  44

seq1  AGCCCAGGCTTCTTGCCTAGGGATTAAACCATCCACAGTGGACCGAGCCC  100
      |||||| || ||||||||||||||||||||| || |||||  | ||||||
seq2  AGCCCA-GCATCTTGCCTAGGGATTAAACCA-CCCCAGTGACCGGAGCCC  92

seq1  TTTTACATCAAAAAAAAAAAAAAAAAAAAACAGACAGGCATGATGGTTCA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATC-AAAAAAAAAAAAAAAAAAAACAGACAGGCATGATGGTTCA  141

seq1  TTCTTTTAATCCCAGCAATTTGGAGGCAGATGTCTGTTGTTCAAGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAATCCCAGCAATTTGGAGGCAGATGTCTGTTGTTCAAGGCCTG  191

seq1  TCTGAT-CTCCAAAGTGACAGATCTACTCCAGGACAGCCAGAGCTACATA  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTCCAAAGTGACAGATCTACTCCAGGACAGCCAGAGCTACATA  241

seq1  TTGAGACGCTGTCTCATAAAAAAGAAAAGGTAAAGGAAAAGAAAGATGGA  299
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  TTGAGACGCTGTCTCATAAAAA--GAAAGGTAAAGGAAAAGAAAGATGGA  289

seq1  AGGGAGGGAGGGAGGGAGGGAGAGAGGGAAAGAGGGAGGTATGAGCCTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGGGAGGGAGGGAGAGAGGGAAAGAGGGAGGTATGAGCCTTA  339

seq1  CAATCTGATGGGGACAATTCCTCAACTGGAAGTCTCTCTTCCCAGGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGATGGGGACAATTCCTCAACTGGAAGTCTCTCTTCCCAGGTGTG  389

seq1  TCAAGTTGACAGCCAAGATCAGCCATCAGAGGGCCCCAACACACTTTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGACAGCCAAGATCAGCCATCAGAGGGCCCCAACACACTTTTCC  439

seq1  TAAACCAGGTTCTCAAATGATACTTTTCAATAGACACCTTTGGACAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGGTTCTCAAATGATACTTTTCAATAGACACCTTTGGACAATGT  489

seq1  TTAATTTGCGAATAATTCCAACGTTATTTTAATCAGCGCAGACTGTGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGCGAATAATTCCAACGTTATTTTAATCAGCGCAGACTGTGACT  539

seq1  TCCCACCACATTTTAAATACTGCTTTTTGAGTCTTAACACTTTAGCCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCACATTTTAAATACTGCTTTTTGAGTCTTAACACTTTAGCCTGC  589

seq1  ACAGGTCTTACTTTCTGTCTCTGTAAGCTAACATAGGCCAATTGAGAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTTACTTTCTGTCTCTGTAAGCTAACATAGGCCAATTGAGAAGC  639

seq1  ACTGACTGTTGCCATGGTAATCAGGTGCCTTTTGTTCTCGGGTTTTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGTTGCCATGGTAATCAGGTGCCTTTTGTTCTCGGGTTTTTGTT  689

seq1  GCATTTGCTTATGAACGAGGCTAGAGCTTCATTGGTGAGGCAAAATGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTTATGAACGAGGCTAGAGCTTCATTGGTGAGGCAAAATGTTC  739

seq1  CATGTGCCTCTGGGCTTAGGGACTTCAAATTTAAAGGAATGTTTTCAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTCTGGGCTTAGGGACTTCAAATTTAAAGGAATGTTTTCAAAT  789

seq1  CATGACAACACTCCATTTCGTCTCACTTCTCAGGAATAAACAACGTGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACACTCCATTTCGTCTCACTTCTCAGGAATAAACAACGTGAGC  839

seq1  TGTCCAGAAGCAGGCCAGCCACTTTCTTTTCTCCTTCCTGATGTTGGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGAAGCAGGCCAGCCACTTTCTTTTCTCCTTCCTGATGTTGGGGC  889

seq1  TGGTTGGGCGTCTGGCGACAGTCAAGGTTCTCAACAGAATCAAAGGCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGCGTCTGGCGACAGTCAAGGTTCTCAACAGAATCAAAGGCCCA  939

seq1  CATCAACTCTCCAGAGGAATTC  971
      ||||||||||||||||||||||
seq2  CATCAACTCTCCAGAGGAATTC  961