BAC Information

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BAC

Clone NameB6Ng01-131A10
Chromosome9 (Build37)9 (Build37)
Map Location 106,943,261 - 106,944,288107,006,073 - 107,006,392
singlet/doubletsingletsinglet
Overlap geneDock3
Upstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131A10.bB6Ng01-131A10.g
ACCDH932188DH932189
length1,1731,019
definitionDH932188|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A10, 5' end.DH932189|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,943,261 - 106,944,288)(107,006,073 - 107,006,392)
sequence
gaattctcaaacagctaaaaataaacctactttatgactctgctattcta
ttccttggtatatgccacattctactctacagatacgttcatagctgctc
tatttaaatagctaggaaacgtaaaaggaaacaacctagatgtccttcaa
ctgctaactagataatgaaaatgtggtacatctgctctatgggataattt
tcagtggtaaagaaaaagattgtattgtgtgaggcaattcagatccagaa
atatatcagaggcttctagatccaaatcttcagatgtgagtataaatccc
gaataactgcagaaattaggaaaataaaaagggactgctccttggatagg
tgggtcgggaagcaatagagagagatcaaaagggtgcaagtgatctgaca
ggggaaagagaaaaggagaactctattagggagaaggagggagataagta
cagagaaaggagtgatgagggtaaaaataacagtaaggatatttgataaa
ctcaaaaaaatcaaagctattcccagcacttgggaggcaggcgtatttct
gagtttgaggccagcctggtctacaaagtgagttccaggacagccagggc
tatacagaaaaaccctgtctcagaaaacaaaaaacaaagctattaactat
ctacttaaaataaacactgaaatacataagtctgtgtataaacatgtttt
tgtatttatatataaatatatagtttaaacaatattttctcatttgggtt
gacaatgttcctttgaagattcaaagaccatctaacaaaacccacaagat
gaggaatgtaaagcccttttttggagttgttggtcaggttgtccaaaaga
tactatacttttgctataaacatcgtagaatactgctattaccctttgtt
gtttccacagaggtaaaggtaagtctctactgctgaagacatcatgcaca
gaatggcttctccctgagaattagctttcattgtaccgaagctatgcaag
cttccaaaggagaaaactaaccaacagtcttgcttagctcctgatgcctt
atggactacaacactagcatgaccacatatccctacggtaaaaaagtgat
acatacttttcttccctcgaataaatatgggcatacgtacttggtgggta
actaaaccgctccaatggattta
gaattctttgtttagctctgtactccatttttaaaatagggttatttggt
tttctggcgtccaacttcttgagttctttatatttattggatattagccc
actatcggatttaggattggtaaaaatcttttcccaatctgttggttgct
gttttgtcttacagtggcctttgccttatagaggctttgcaattttatga
ggtcctacttgtcgattcttgatcttacagcacaagccattgctgttctg
ttcaggaatttttcttctgtgcccatatcctcgagactcttccccacttt
ctcctctataagtttcagtgtctctggttttatatggagttccttgattt
tcttagtaaaaatggccatcttgctgagagcaatctacagactcaatgca
atccccatcaaaattccaactcaattcttcacagagttagaaagggcaat
ttgcaaattcatctggaataacaaaaaatctaggatagcaaaaactattc
tcaaggataaaagaacctctggtggaatcaccatcccgacctcaagctgt
actacagagcaattgtgataaaaactgcatggtactggtacagtgacaga
caggtagatcaatggaatagaattaaagacacagaaatgaacccacacac
ctatggtcacttgatctttgacaaaggagctaaaaccatccagtggaaag
aagacagcatcttcaacaaatggtgctggctccactggcggtttttattt
ttgtttttttgttttgttttttaagaatttttcctacaggcaaactagct
ttcaaggcagatatccattcatttattcagtaaattgatatttgttgtgt
ggtctaaagataggaacataaagagacttctgactccagactaaaagtct
cagacagaccttctcaagatgactcctttgggagccagtggcctaacact
tgtcatcaggcctgattactagagtggattctcagaaggcttccatggta
tgtcctctgacctcacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106943261_106944288
seq2: B6Ng01-131A10.b_192_1217

seq1  CAACTGCTAACTAGATAATGAAAATGTGGTACATCTGCTCTATGGGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTAACTAGATAATGAAAATGTGGTACATCTGCTCTATGGGATAA  50

seq1  TTTTCAGTGGTAAAGAAAAAGATTGTATTGTGTGAGGCAATTCAGATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGGTAAAGAAAAAGATTGTATTGTGTGAGGCAATTCAGATCCA  100

seq1  GAAATATATCAGAGGCTTCTAGATCCAAATCTTCAGATGTGAGTATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATCAGAGGCTTCTAGATCCAAATCTTCAGATGTGAGTATAAAT  150

seq1  CCCGAATAACTGCAGAAATTAGGAAAATAAAAAGGGACTGCTCCTTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAATAACTGCAGAAATTAGGAAAATAAAAAGGGACTGCTCCTTGGAT  200

seq1  AGGTGGGTCGGGAAGCAATAGAGAGAGATCAAAAGGGTGCAAGTGATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTCGGGAAGCAATAGAGAGAGATCAAAAGGGTGCAAGTGATCTG  250

seq1  ACAGGGGAAAGAGAAAAGGAGAACTCTATTAGGGAGAAGGAGGGAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAAAGAGAAAAGGAGAACTCTATTAGGGAGAAGGAGGGAGATAA  300

seq1  GTACAGAGAAAGGAGTGATGAGGGTAAAAATAACAGTAAGGATATTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGAAAGGAGTGATGAGGGTAAAAATAACAGTAAGGATATTTGAT  350

seq1  AAACTCAAAAAAATCAAAGCTATTCCCAGCACTTGGGAGGCAGGCGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAAAAATCAAAGCTATTCCCAGCACTTGGGAGGCAGGCGTATT  400

seq1  TCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  450

seq1  GGCTATACAGAAAAACCCTGTCTCAGAAAACAAAAAACAAAGCTATTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAGAAAAACCCTGTCTCAGAAAACAAAAAACAAAGCTATTAAC  500

seq1  TATCTACTTAAAATAAACACTGAAATACATAAGTCTGTGTATAAACATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTTAAAATAAACACTGAAATACATAAGTCTGTGTATAAACATGT  550

seq1  TTTTGTATTTATATATAAATATATAGTTTAAACAATATTTTCTCATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTTATATATAAATATATAGTTTAAACAATATTTTCTCATTTGG  600

seq1  GTTGACAATGTTCCTTTGAAGATTCAAAGACCATCTAACAAAACCCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAATGTTCCTTTGAAGATTCAAAGACCATCTAACAAAACCCACAA  650

seq1  GATGAGGAATGTAAAGCCCTTTTTTGGAGTTGTTGGTCAGGTTGTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGAATGTAAAGCCCTTTTTTGGAGTTGTTGGTCAGGTTGTCCAAA  700

seq1  AGATACTATACTTTTGCTATAAACATCGTAGAATACTGCTATTACCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTATACTTTTGCTATAAACATCGTAGAATACTGCTATTACCCTTT  750

seq1  GTTGTTTCCACAGAGGTAAAGGTAAGTCTCTACTGCTGAAGACATCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCCACAGAGGTAAAGGTAAGTCTCTACTGCTGAAGACATCATGC  800

seq1  ACAGAATGGCTTCTCCCTGAGAATTAGCTTTCATTGTACCGAAGCTATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGGCTTCTCCCTGAGAATTAGCTTTCATTGTACCGAAGCTATGC  850

seq1  AAGCTTCCAAAGGAGAAAACTAACCAACAGTCTTGCTTAGCT-CTGATGC  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGCTTCCAAAGGAGAAAACTAACCAACAGTCTTGCTTAGCTCCTGATGC  900

seq1  C-TATGAACTACAACAACTAGCATGACACAATATCCCTACGGTTATAATA  948
      | |||| |||||||| |||||||||||   |||||||||||| || || |
seq2  CTTATGGACTACAAC-ACTAGCATGACCACATATCCCTACGG-TAAAAAA  948

seq1  GTGGTATACATACTTTTTCTCCCTCGATATAATATTGGCATACGTACTTT  998
      |||  ||||||||||||  ||||||||   ||||| ||||||||||||| 
seq2  GTG--ATACATACTTTTCTTCCCTCGAATAAATATGGGCATACGTACTTG  996

seq1  GGTGGTAACT-AACAGCTCCCATTGGATTTA  1028
      |  ||||||| ||| ||| ||| ||||||||
seq2  GTGGGTAACTAAACCGCT-CCAATGGATTTA  1026

seq1: chr9_107006073_107006392
seq2: B6Ng01-131A10.g_422_740

seq1  GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  50
      ||||||||||| |||||||  | ||||||||||||| |||||||||||||
seq2  GTAAAAATGGCCATCTTGCTGAGAGCAATCTACAGACTCAATGCAATCCC  50

seq1  CATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCA  100
      ||||||||||||||||||||||||||  || |||||| | ||||||||||
seq2  CATCAAAATTCCAACTCAATTCTTCACAGAGTTAGAAAGGGCAATTTGCA  100

seq1  AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAG  150
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  AATTCATCTGGAATAACAAAAAATCTAGGATAGCAAAAACTATTCTCAAG  150

seq1  GATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTA  200
      ||||||||||||||||||||||||||||| || ||||| ||||| |||||
seq2  GATAAAAGAACCTCTGGTGGAATCACCAT-CCCGACCTCAAGCTGTACTA  199

seq1  CAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGACAAG  250
      ||||||||||||| |||||||||||||||||||||| || |||||||| |
seq2  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTACAGTGACAGACAGG  249

seq1  TAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTAT  300
      |||| ||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TAGATCAATGGAATAGAATTAAAGACACAGAAATGAACCCACACACCTAT  299

seq1  GGTCACTTGATCTTTGACAA  320
      ||||||||||||||||||||
seq2  GGTCACTTGATCTTTGACAA  319