BAC Information

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BAC

Clone NameB6Ng01-131H17
Chromosome14 (Build37)9 (Build37)
Map Location 89,560,992 - 89,561,2375,944,437 - 5,944,505
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131H17.bB6Ng01-131H17.g
ACCDH932528DH932529
length1,011485
definitionDH932528|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H17, 5' end.DH932529|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,560,992 - 89,561,237)(5,944,437 - 5,944,505)
sequence
gaattctttgtttagctctgtacaccattttttaatagggttatttgttt
ctctgaagtctaacttcttgaggtctttgtatatattagataatagtcct
ctatcagatgtaggattggtgaagatcttttcccagtctgttggtggcct
ttttttgtcttattgacagtgtcctttgctttacagaagctttgcaattt
tatgagctttcatttgtctattctcgatcttataccacaaactgttgctg
ttctgttcagaaatttttcccctttgcccatttgtttgaggctcttcccc
actatctcttctataagtttcagggtatctggttttatgtgaaggtcctt
gatccacttggatttgagctttgtacaaggagatgagaatgaatcaattt
gccttcttctacatgctagccgccagttgaaccaacaccatttgttgaaa
atgctgtcttctttccactggatgattttagctccttggtcaaagatcaa
gtgaccgtaggtgtgtctattctccatttctattgaactgatctaccagc
aagtgactgtaccaatatcatgcatttttatcacaagagctctgtagtgc
agcttgaggtcagggatggtgattcccccagaggttcttttattgttgag
aatagtttttgttatcctgagttttttgttattccagatgaatttggaaa
atgctctttctaaatctatgaagaattgagttgaaattttgatatggatt
gcactgactagcttttgacaagatggccatttttacgatattaatcctgc
caatccatgagcatgggagatctacacatcttctgagatcttcaatttct
ttcttcagagaactgaagttcttatcatgcagatatttcactttcttagt
tagattcacaccaaggtattttatattacttgtgactatatcaaggtgtt
gtttgcctaatttcttctcagcctgcttatcctttgtgtagagccactga
ttagattaaat
atagtatttataccaatatatttaaacaatatgagcaccgagccttttct
gagataatctctttttcacttgatatattcagttttctttaagggactgg
ccactaggaagttgaccatgctctattgagtatatgagcaacacaagttg
gacttaatgagttattatttggttggtggtttagttccagggaactctga
aggtactggttagttcatattgttattcctcctgtggggctgcaaacccc
tttagctttttggatgttttctctaactccttcattggtgactctgtgct
cagtccaatggatggctgtgagcatccacttctgtatttgtcagacactg
gtatagcctctcaggagatagctatatcaggcccctgtcagcacacatgg
tggctctagctgcatatgtagcagaggatggcctagtcagtcatcagtgg
gaggagaggcccttggtcctgtaaaggttctatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89560992_89561237
seq2: B6Ng01-131H17.b_69_558 (reverse)

seq1  ACACACCTATGGTCACTTGATCTTTGACAAAGGAGCTAAAACCATCCAGT  50
      ||||||||| |||||||||||||||||| |||||||||||| ||||||||
seq2  ACACACCTACGGTCACTTGATCTTTGACCAAGGAGCTAAAATCATCCAGT  50

seq1  GG-------------TCTTGCAAAGATTATATTGCTGAGTACAGGGGAAT  87
      ||             | ||  | | ||  | |||    || ||    | |
seq2  GGAAAGAAGACAGCATTTTCAACAAATGGTGTTG----GTTCA----ACT  92

seq1  GCCAGGGCCAG------GAAGAAGG--AGTGGGTGGGTT--------GGG  121
      | |  ||| ||      ||||||||  | | | |   ||           
seq2  GGC--GGCTAGCATGTAGAAGAAGGCAAATTGATTCATTCTCATCTCCTT  140

seq1  GAGCATGGC---AAGGGGAGTCTATAGGGGACTTT---------TGGGAT  159
      |  ||  ||   ||    |||  ||   |||| ||            |||
seq2  GTACAAAGCTCAAATCCAAGTGGATCAAGGACCTTCACATAAAACCAGAT  190

seq1  AGCATTTGAAA--TGTAAATGA---AGT----AAATATCTAATAAAAATT  200
      | |   |||||  | || | ||   |||    ||    || | | |||| 
seq2  ACC--CTGAAACTTATAGAAGAGATAGTGGGGAAGAGCCTCAAACAAATG  238

seq1  GTTAAATTGAAAAAA------AAAAGAAAATCAACTAACCCTATTAAAAA  244
      |  |||  | |||||      || |||| | ||||      |  || || 
seq2  GGCAAAGGGGAAAAATTTCTGAACAGAACAGCAACAGTTTGTGGTATAAG  288

seq1  AT------------------------------------------------  246
      ||                                                
seq2  ATCGAGAATAGACAAATGAAAGCTCATAAAATTGCAAAGCTTCTGTAAAG  338

seq1  --------------------------------------------------  246
                                                        
seq2  CAAAGGACACTGTCAATAAGACAAAAAAAGGCCACCAACAGACTGGGAAA  388

seq1  --------------------------------------------------  246
                                                        
seq2  AGATCTTCACCAATCCTACATCTGATAGAGGACTATTATCTAATATATAC  438

seq1  --------------------------------------------------  246
                                                        
seq2  AAAGACCTCAAGAAGTTAGACTTCAGAGAAACAAATAACCCTATTAAAAA  488

seq1  --  246
        
seq2  AT  490

seq1: chr9_5944437_5944505
seq2: B6Ng01-131H17.g_490_558 (reverse)

seq1  GCATAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATTGATGACCAAC  50
      ||||||||||||  || ||||||||||||||||||||| |||||||  ||
seq2  GCATAGAACCTTTACAGGACCAAGGGCCTCTCCTCCCACTGATGACTGAC  50

seq1  TAGGCCATCCTCTGCTACA  69
      |||||||||||||||||||
seq2  TAGGCCATCCTCTGCTACA  69