BAC Information

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BAC

Clone NameB6Ng01-131J21
Chromosome9 (Build37)
Map Location 94,783,794 - 94,835,689
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J21.bB6Ng01-131J21.g
ACCDH932628DH932629
length1,076638
definitionDH932628|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J21, 5' end.DH932629|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,783,794 - 94,784,873)(94,834,663 - 94,835,689)
sequence
gaattcaacaacaacaacaacaacaacaaaaatagccacacatttttgtt
tcatagttgagccatatatcaacaattaaggatataaagtggggtgtttg
gatggtcttctatcaccctcctaacaacgacttcacggcttctttatctc
aacatcctccttggtccttcagctctgtgcagaaagagacacttctcctt
tgctccgtcacggctcaccgcccaacacagcagagccccttaacctgtca
gcctgtccacctcttcaagagttccccatccctggagcacttgcttcttc
tagctggtacttacttaggtgatgtttgatgagtgagaggtttgggaagc
agatgcactgtcacatctgattaattattgcccactaattaatcaatgac
tggagtggaaagaccagttgtttctcctgtgttttcctcttgtatggtga
tttggtgaagccagttacatttaaagaagatccccttttcttttgatgcc
atcaccagagataaagcctctatacatgcagagaaaagcaagaagcaggc
tccaagttcacccagagacttaaaggaattaaacaaggagagtatagcat
ttctgttgatgatttttgtgtctggtttgtttgtttgtttgtttgtgtat
atatttccttatttattttggcaaaaagaacataactgagttacatttta
aaaagttattttatgagatgaaaatttttgcacatacacaggcatgggca
tatacacaaacacacacatacacaactagctctttgtatttttatctatt
atttttgttggttttcactgaatatagatttttttcaacaagtaattcct
ccaaattaaatgtttcataggggacttagacaagtaagaagaatctcata
ctatgcagttaaaaataacaataaaaagaggtggcgagatccaggggcta
gcttggtaccaggtgctactgagctctgcatagtctgactcattcacatc
acagagcatcctatggaatcacctgctctgacgtcaccacgacaagtcca
tcactgcttgtaaccaccactgaatg
gaattctgaaaaggactttgtagctttgtggagaggaaaagggaccccag
acaggctgattgagattacacaggattatccacaaaggaacaaagtctct
taggccaggatgattagagcctgctcactctctgctctggctctctgcct
ctagagactagttaggagagggagcaagtgggttccagccttcccacagg
aagatatggaaggaaaggggtagttttaaatgttctttggatttctgtgg
gcacctttaaacctccaaaacaggccaacgtttctaccttgatctcttaa
ttggatgaagaaggtgaatggtggtgaaggcagccctgcagtgtgcctga
gggaaagcctcctgtgagcaacctcaccttctgtttgcaccatggcttcc
agcaaagccatggtgcaaacccaccttttgtcttttgtaattgccaatcc
cctgcaaggtgttaaaccccagggctgatgaaaacctagtgctggagcga
ggaaggctcagtttaccttgacattcaccagcacaactctccatttctgt
caagaggcatgaaagggagaatccttcctttctttcaaataaaagcctgc
ctgtctgccttccttccttccttccttccttacataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94783794_94784873
seq2: B6Ng01-131J21.b_49_1124

seq1  GAATTCAACAACAACAACAACAACAACAAAAATAGCCACACATTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAACAACAACAACAACAACAAAAATAGCCACACATTTTTGTT  50

seq1  TCATAGTTGAGCCATATATCAACAATTAAGGATATAAAGTGGGGTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTGAGCCATATATCAACAATTAAGGATATAAAGTGGGGTGTTTG  100

seq1  GATGGTCTTCTATCACCCTCCTAACAACGACTTCACGGCTTCTTTATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTTCTATCACCCTCCTAACAACGACTTCACGGCTTCTTTATCTC  150

seq1  AACATCCTCCTTGGTCCTTCAGCTCTGTGCAGAAAGAGACACTTCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTCCTTGGTCCTTCAGCTCTGTGCAGAAAGAGACACTTCTCCTT  200

seq1  TGCTCCGTCACGGCTCACCGCCCAACACAGCAGAGCCCCTTAACCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCGTCACGGCTCACCGCCCAACACAGCAGAGCCCCTTAACCTGTCA  250

seq1  GCCTGTCCACCTCTTCAAGAGTTCCCCATCCCTGGAGCACTTGCTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCACCTCTTCAAGAGTTCCCCATCCCTGGAGCACTTGCTTCTTC  300

seq1  TAGCTGGTACTTACTTAGGTGATGTTTGATGAGTGAGAGGTTTGGGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTACTTACTTAGGTGATGTTTGATGAGTGAGAGGTTTGGGAAGC  350

seq1  AGATGCACTGTCACATCTGATTAATTATTGCCCACTAATTAATCAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACTGTCACATCTGATTAATTATTGCCCACTAATTAATCAATGAC  400

seq1  TGGAGTGGAAAGACCAGTTGTTTCTCCTGTGTTTTCCTCTTGTATGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGGAAAGACCAGTTGTTTCTCCTGTGTTTTCCTCTTGTATGGTGA  450

seq1  TTTGGTGAAGCCAGTTACATTTAAAGAAGATCCCCTTTTCTTTTGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGAAGCCAGTTACATTTAAAGAAGATCCCCTTTTCTTTTGATGCC  500

seq1  ATCACCAGAGATAAAGCCTCTATACATGCAGAGAAAAGCAAGAAGCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGAGATAAAGCCTCTATACATGCAGAGAAAAGCAAGAAGCAGGC  550

seq1  TCCAAGTTCACCCAGAGACTTAAAGGAATTAAACAAGGAGAGTATAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTCACCCAGAGACTTAAAGGAATTAAACAAGGAGAGTATAGCAT  600

seq1  TTCTGTTGATGATTTTTGTGTCTGGTTTGTTTGTTTGTTTGTTTGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGATGATTTTTGTGTCTGGTTTGTTTGTTTGTTTGTTTGTGTAT  650

seq1  ATATTTCCTTATTTATTTTGGCAAAAAGAACATAACTGAGTTACATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTTATTTATTTTGGCAAAAAGAACATAACTGAGTTACATTTTA  700

seq1  AAAAGTTATTTTATGAGATGAAAATTTTTGCACATACACAGGCATGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATTTTATGAGATGAAAATTTTTGCACATACACAGGCATGGGCA  750

seq1  TATACACAAACACACACATACACAACTAGCTCTTTGTATTTTTATCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAAACACACACATACACAACTAGCTCTTTGTATTTTTATCTATT  800

seq1  ATTTTTGTTGGTTTTCACTGAATATAGATTTTTTTCAACAAGTAATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTGGTTTTCACTGAATATAGATTTTTTTCAACAAGTAATTCCT  850

seq1  CCAAATTAAATGTTTTCATAGGGGACTTAGACAAGTAAGAATGAATCTCA  900
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  CCAAATTAAATG-TTTCATAGGGGACTTAGACAAGTAAGAA-GAATCTCA  898

seq1  TACTATGCAGTTAAAAAATAACAATAAAAAGAGGTGGCGAGATCCAGGGG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACTATGCAGTT-AAAAATAACAATAAAAAGAGGTGGCGAGATCCAGGGG  947

seq1  CTAGCTTGGGTACCAGGTGCTACTGAGCTCTGCAAAGTCTGACTCATTCA  1000
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  CTAGCTT-GGTACCAGGTGCTACTGAGCTCTGCATAGTCTGACTCATTCA  996

seq1  CATCACAGAGCATCCTATGGAATCACCTGCTCTGACGTCACCACGACAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGAGCATCCTATGGAATCACCTGCTCTGACGTCACCACGACAAG  1046

seq1  TCCATCACTGCTTGTAACCACCACTGAATG  1080
      ||||||||||||||||||||||||||||||
seq2  TCCATCACTGCTTGTAACCACCACTGAATG  1076

seq1: chr9_94834663_94835689
seq2: B6Ng01-131J21.g_66_703 (reverse)

seq1  TGTATGTATTCTTCAGTGAAAGACTTCGTAGGTGAATAAAAGTGAAATTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTAAAGAAAAGCAGACCATAAATGATGGTATAAGGTGTCACCAGTTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TACTGTGGATATCAGGAACAACCAGAAAACCATTTCTAGGGAGTTAGAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGAGGGGTAAAGAGATGCCAGTTCAAGGGGTCTGATCCACTGCTGGCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAACCTCCAGAACTTTAGAGTTATTCACAAACCTCCATTGCTGTAGATAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGATAGATAGATAGATAGATAGATAGATACATACATACATACATACAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACATACATACATACTTTTATTTGAAAGAAAGGAAGAAATACAGATAGACA  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  400
                                              | | | ||||
seq2  ---------------------------------------TGTATGTAAGG  11

seq1  AAGGAAGGAAGGAAGGAAGGCAGACAGGCAGGCTTTTATTTGAAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGCAGACAGGCAGGCTTTTATTTGAAAGAAAG  61

seq1  GAAGGATTCTCCCTTTCATGCCTCTTGACAGAAATGGAGAGTTGTGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTCTCCCTTTCATGCCTCTTGACAGAAATGGAGAGTTGTGCTGG  111

seq1  TGAATGTCAAGGTAAACTGAGCCTTCCTCGCTCCAGCACTAGGTTTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCAAGGTAAACTGAGCCTTCCTCGCTCCAGCACTAGGTTTTCAT  161

seq1  CAGCCCTGGGGTTTAACACCTTGCAGGGGATTGGCAATTACAAAAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGGGTTTAACACCTTGCAGGGGATTGGCAATTACAAAAGACAA  211

seq1  AAGGTGGGTTTGCACCATGGCTTTGCTGGAAGCCATGGTGCAAACAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGTTTGCACCATGGCTTTGCTGGAAGCCATGGTGCAAACAGAAG  261

seq1  GTGAGGTTGCTCACAGGAGGCTTTCCCTCAGGCACACTGCAGGGCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTGCTCACAGGAGGCTTTCCCTCAGGCACACTGCAGGGCTGCCT  311

seq1  TCACCACCATTCACCTTCTTCATCCAATTAAGAGATCAAGGTAGAAACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCATTCACCTTCTTCATCCAATTAAGAGATCAAGGTAGAAACGT  361

seq1  TGGCCTGTTTTGGAGGTTTAAAGGTGCCCACAGAAATCCAAAGAACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTTTTGGAGGTTTAAAGGTGCCCACAGAAATCCAAAGAACATTT  411

seq1  AAAACTACCCCTTTCCTTCCATATCTTCCTGTGGGAAGGCTGGAACCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCCCTTTCCTTCCATATCTTCCTGTGGGAAGGCTGGAACCCAC  461

seq1  TTGCTCCCTCTCCTAACTAGTCTCTAGAGGCAGAGAGCCAGAGCAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCTCTCCTAACTAGTCTCTAGAGGCAGAGAGCCAGAGCAGAGAG  511

seq1  TGAGCAGGCTCTAATCATCCTGGCCTAAGAGACTTTGTTCCTTTGTGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGCTCTAATCATCCTGGCCTAAGAGACTTTGTTCCTTTGTGGAT  561

seq1  AATCCTGTGTAATCTCAATCAGCCTGTCTGGGGTCCCTTTTCCTCTCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTGTAATCTCAATCAGCCTGTCTGGGGTCCCTTTTCCTCTCCAC  611

seq1  AAAGCTACAAAGTCCTTTTCAGAATTC  1027
      |||||||||||||||||||||||||||
seq2  AAAGCTACAAAGTCCTTTTCAGAATTC  638