BAC Information

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BAC

Clone NameB6Ng01-131M10
Chromosome9 (Build37)
Map Location 103,109,413 - 103,279,021
singlet/doubletdoublet
Overlap geneTrf, 1300017J02Rik, Topbp1, Cdv3
Upstream geneEphb1, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb
Downstream geneBfsp2, Tmem108, 4932413F04Rik, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131M10.bB6Ng01-131M10.g
ACCDH932748DH932749
length1,133370
definitionDH932748|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M10, 5' end.DH932749|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,277,883 - 103,279,021)(103,109,413 - 103,109,755)
sequence
gaattctttgtaattcgaaaaagggggtggaggaacacaaatactcacac
cagtggaatggtatgaagatgttagttggactagtgtggggcctttaagt
gtaaagggaaggcttcaaagactttgtagcaacatggaaaaccacatatg
atgtcatactaagtggaatgtagacaagacaggtggttcagggccgtgtg
cgggtgtaagggatgtgtgtgaggctggattttccagctcagtagaccag
gctgggggctcagttcccattgccccccaacatgtgggcagagtgagcaa
ccacccacatacacaaagtcccctaatgtctccgggcctttttttcttct
ccctcctctatgccaaatagtcttatgtaggtaaagctggcttttcatgg
gctatgtagctcaagctgaccttaaattccttatcctcttgttccacatc
ttaggagcttgcaccaccacactgaggcttggcatttgaaatgatatgtc
cagttttacacattgccaacatttcaccatggactttaggaagtattaga
tgcccctgacagttttactccagacagcagctctgtggatggacaacttt
tgacattagagacatttggcccatcaggtccttctcttgttgttctatca
tttttttgtttttgggtatgtgtgcatttctgtgtctgtcactttgtgtg
ctggtgcccgaagaaaccagaagagagcatcggatcccctaccactggag
tgtgtcagatcccctacagctcgagttataaatcatggcttccgggaact
gaacttcaggcttcttaaaggtttacaaacacttgtagccactgagccat
ctctgtatccccttctttttcctcattatttgttttgctttgtgaaatag
agtcccacatagcccggagtggcctcaaactcactctgcagatggcacgt
gccttgatctcctgatttttctgcccctccctctaaatgctaggattaca
ggcatttgccacctaccctggctcctgtgttgatatgtgttgtggtgttg
aaagagaacattaccataagaggtgggctgtctgacttccataacttggc
ctcaacatgtcgtggtactggaagtaagaatgg
ttaagatacccagattggtaggataagctcaggtcatgagtgaacacaga
gagatgggaatcaaagagaatgaccatgtcagagagggaaaaccatccta
agaaagggagggtagttgggcgtggtggcgcaagcctttaatcccagcac
ttgggaggcagaggcagatggatttctgagttcgaggccagcctgctcta
caaagtgagttccaggacagccagggctacacagcctgtctcgaaaaaca
aaacaaaacaaacaaataagaaaggaaggaagaaagaaagagagagaaag
agagaaagaaagagagaaagagaaagatagagagaaatatagataggaga
taaagagaaagagagaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_103277883_103279021
seq2: B6Ng01-131M10.b_44_1176 (reverse)

seq1  CCATTCTTAACTTCAGTA-CACAGCAGTCTGAGGCAAGATAATGGAAGTC  49
      |||||||||  | ||||| |||  ||   |||||| |  | |||||||||
seq2  CCATTCTTACTTCCAGTACCACGACATGTTGAGGCCAAGTTATGGAAGTC  50

seq1  AAGACCAGCCCAACTC-TATAGTAATAGTCTCTCTTCAACAACAACAACA  98
       ||| ||||||| ||| ||| |||||  ||||| |||||| || ||||||
seq2  -AGA-CAGCCCACCTCTTATGGTAATGTTCTCT-TTCAAC-ACCACAACA  96

seq1  ACAATATCAACAACAGGAGCCAGGGTAGGTGGCAAATGCCTGTAATCCTA  148
         |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  --CATATCAAC-ACAGGAGCCAGGGTAGGTGGCAAATGCCTGTAATCCTA  143

seq1  GCATTTAGAGGGGAGGGGCAGAAAAATCAGGAGATCAAGGCACGTGCCAT  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGA-GGGAGGGGCAGAAAAATCAGGAGATCAAGGCACGTGCCAT  192

seq1  CTGCAGAGTGAGTTTGAGGCCACTCCGGGCTATGTGGGACTCTATTTCAA  248
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGCAGAGTGAGTTTGAGGCCACTCCGGGCTATGTGGGACTCTATTTC-A  241

seq1  CAAAGCAAAACAAATAATGAGGAAAAAGAAGGGGATACAGAGATGGCTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAACAAATAATGAGGAAAAAGAAGGGGATACAGAGATGGCTCA  291

seq1  GTGGCTACAAGTGTTTGTTAACCTTTAAGAAGCCTGAAGTTCAGTTCCCG  348
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGCTACAAGTGTTTGTAAACCTTTAAGAAGCCTGAAGTTCAGTTCCCG  341

seq1  GAAGCCATGATTTATAACTCGAGCTGTAGGGGATCTGACACACTCCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATGATTTATAACTCGAGCTGTAGGGGATCTGACACACTCCAGTG  391

seq1  GTAGGGGATCCGATGCTCTCTTCTGGTTTCTTCGGGCACCAGCACAC-AA  447
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGGGGATCCGATGCTCTCTTCTGGTTTCTTCGGGCACCAGCACACAAA  441

seq1  GTGACAGACACAGAAATGCACACATACCCAAAAACAAAAAAATGATAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGACACAGAAATGCACACATACCCAAAAACAAAAAAATGATAGAA  491

seq1  CAACAAGAGAAGGACCTGATGGGCCAAATGTCTCTAATGTCAAAAGTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAGAAGGACCTGATGGGCCAAATGTCTCTAATGTCAAAAGTTGT  541

seq1  CCATCCACAGAGCTGCTGTCTGGAGTAAAACTGTCAGGGGCATCTAATAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACAGAGCTGCTGTCTGGAGTAAAACTGTCAGGGGCATCTAATAC  591

seq1  TTCCTAAAGTCCATGGTGAAATGTTGGCAATGTGTAAAACTGGACATATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAAGTCCATGGTGAAATGTTGGCAATGTGTAAAACTGGACATATC  641

seq1  ATTTCAAATGCCAAGCCTCAGTGTGGTGGTGCAAGCTCCTAAGATGTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATGCCAAGCCTCAGTGTGGTGGTGCAAGCTCCTAAGATGTGGA  691

seq1  ACAAGAGGATAAGGAATTTAAGGTCAGCTTGAGCTACATAGCCCATGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGATAAGGAATTTAAGGTCAGCTTGAGCTACATAGCCCATGAAA  741

seq1  AGCCAGCTTTACCTACATAAGACTATTTGGCATAGAGGAGGGAGAAGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTTTACCTACATAAGACTATTTGGCATAGAGGAGGGAGAAGAAA  791

seq1  AAAAGGCCCGGAGACATTAGGGGACTTTGTGTATGTGGGTGGTTGCTCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCCGGAGACATTAGGGGACTTTGTGTATGTGGGTGGTTGCTCAC  841

seq1  TCTGCCCACATGTTGGGGGGCAATGGGAACTGAGCCCCCAGCCTGGTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCACATGTTGGGGGGCAATGGGAACTGAGCCCCCAGCCTGGTCTA  891

seq1  CTGAGCTGGAAAATCCAGCCTCACACACATCCCTTACACCCGCACACGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGGAAAATCCAGCCTCACACACATCCCTTACACCCGCACACGGC  941

seq1  CCTGAACCACCTGTCTTGTCTACATTCCACTTAGTATGACATCATATGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCACCTGTCTTGTCTACATTCCACTTAGTATGACATCATATGTG  991

seq1  GTTTTCCATGTTGCTACAAAGTCTTTGAAGCCTTCCCTTTACACTTAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCATGTTGCTACAAAGTCTTTGAAGCCTTCCCTTTACACTTAAAG  1041

seq1  GCCCCACACTAGTCCAACTAACATCTTCATACCATTCCACTGGTGTGAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACACTAGTCCAACTAACATCTTCATACCATTCCACTGGTGTGAGT  1091

seq1  ATTTGTGTTCCTCCACCCCCTTTTTCGAATTACAAAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTCCTCCACCCCCTTTTTCGAATTACAAAGAATTC  1133

seq1: chr9_103109413_103109755
seq2: B6Ng01-131M10.g_70_412

seq1  GAATTCTTAAGATACCCAGATTGGTAGGATAAGCTCAGGTCATGAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGATACCCAGATTGGTAGGATAAGCTCAGGTCATGAGTGAA  50

seq1  CACAGAGAGATGGGAATCAAAGAGAATGACCATGTCAGAGAGGGAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAGATGGGAATCAAAGAGAATGACCATGTCAGAGAGGGAAAACC  100

seq1  ATCCTAAGAAAGGGAGGGTAGTTGGGCGTGGTGGCGCAAGCCTTTAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGAAAGGGAGGGTAGTTGGGCGTGGTGGCGCAAGCCTTTAATCC  150

seq1  CAGCACTTGGGAGGCAGAGGCAGATGGATTTCTGAGTTCGAGGCCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGGCAGATGGATTTCTGAGTTCGAGGCCAGCCT  200

seq1  GCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGCCTGTCTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGCCTGTCTCGA  250

seq1  AAAACAAAACAAAACAAACAAATAAGAAAGGAAGGAAGAAAGAAAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAACAAATAAGAAAGGAAGGAAGAAAGAAAGAGAG  300

seq1  AGAAAGAGAGAAAGAAAGAGAGAAAGAGAAAGAGAGAGAGAAA  343
      ||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAAGAGAGAAAGAAAGAGAGAAAGAGAAAGATAGAGAGAAA  343