BAC Information

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BAC

Clone NameB6Ng01-131N11
Chromosome9 (Build37)
Map Location 108,054,189 - 108,161,578
singlet/doubletdoublet
Overlap geneBsn, LOC100042108, Dag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131N11.bB6Ng01-131N11.g
ACCDH932796DH932797
length1,173493
definitionDH932796|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N11, 5' end.DH932797|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,054,189 - 108,055,380)(108,161,080 - 108,161,578)
sequence
gaattcagccagaacagcatcctctcttgtaactgataccctctgcaata
ccagggacatgggcacaaccacctccttccatcttcgacatcgccatgtc
cattgctccacacactgccagcctccgtgcagaaagtgcacatgggtggt
gactcatctcccgtttttttccaactgtgctgtcttacctctgtgatttt
ctgttttagaaaatgtatttttttaatgtgtacgagtgctttgcctgtgc
atatttctgtacaccatgtgcatgcctgtttccaaccgaggctagaggag
gctgccaggttccctggacctggagcttcagatggttttacagctccgag
tgggtgctgggaaccaaacccaggtgctctgcaagagcagcgagtgcttt
taaccactgggccatcgctccagcccttcctctgtgggttatactggttt
tcagggtctcaggtggtcaggttggcctcgaactctctacatagccaagg
atgacattgaacatctgatcctcttgcctctactatccaagcgctgggac
catagatgtgtacagcacgcccggtttatatgaagctggagcgtgaaccc
agagcctcaggcaagctaggcaaatgctgtgcttacagagctacatgccc
tccctgcgtttacaggcctgtgatgtccaactgaggctctaggcgctggc
ttttcctcttcctcaaacccgagagcataagaatattgagagctccattt
ctatgaccttcctgtggacagttccccatcagtgagaatagtgaccagtg
gccgacttctggcaaaagatgcctttctgtgcccaccgcttgctgtagag
gcggggtctcaacttctcctcagctacagggtcactaaagctcaatgggt
ctgacttaggtcaaaactctcatttaagttttaatttaatttagctaaca
ttaataaccttcacgtgcctgaacgcccttcaccaagaagaagccctctc
cgtggctgcacccaggctctataaccctgaaagatggtccaagggttaaa
catgtttgtctgctgaagaactggttcagtccagcacccccatgtaagct
gcaacacccataaaataagttccgaagaattcacgctctctctgacctct
gcagaaccaaaacgtattgggtg
cagagctatcactttggctacgaagaacactttgtgtctttgtaactggt
aggattgatgagccacttgttcatcctaggcagggactttaccttgagct
accccaactacattgctacctcttatcccccagttttgtttttttgaggc
aaactcttactagctcaagctagctgcagacttgcagtcctcccatgtca
gtatctggagcagtagaattaggagtctgtaccatcgtgactggcttcca
taactccccccccgcccccccaagtctcacagtagctcaggttagcatgg
cattcagtctgtcgcttaggcatgcctttgctgagtgctaggatttatag
ccttgatgaagaaggcattaatgtactggaatggcaggtgacaataggct
cattttatggaaggttcaagaaataaaagaggcctggcagtggtggcaca
tgcctttaatcccagcacttgggaggcagaggcaggcaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108054189_108055380
seq2: B6Ng01-131N11.b_49_1221

seq1  GAATTCAGCCAGAACAGCATCCTCTCTTGTAACTGATACCCTCTGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCAGAACAGCATCCTCTCTTGTAACTGATACCCTCTGCAATA  50

seq1  CCAGGGACATGGGCACAACCACCTCCTTCCATCTTCGACATCGCCATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACATGGGCACAACCACCTCCTTCCATCTTCGACATCGCCATGTC  100

seq1  CATTGCTCCACACACTGCCAGCCTCCGTGCAGAAAGTGCACATGGGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCCACACACTGCCAGCCTCCGTGCAGAAAGTGCACATGGGTGGT  150

seq1  GACTCATCTCCCGTTTTTTTCCAACTGTGCTGTCTTACCTCTGTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCTCCCGTTTTTTTCCAACTGTGCTGTCTTACCTCTGTGATTTT  200

seq1  CTGTTTTAGAAAATGTATTTTTTTAATGTGTACGAGTGCTTTGCCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGAAAATGTATTTTTTTAATGTGTACGAGTGCTTTGCCTGTGC  250

seq1  ATATTTCTGTACACCATGTGCATGCCTGTTTCCAACCGAGGCTAGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGTACACCATGTGCATGCCTGTTTCCAACCGAGGCTAGAGGAG  300

seq1  GCTGCCAGGTTCCCTGGACCTGGAGCTTCAGATGGTTTTACAGCTCCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGTTCCCTGGACCTGGAGCTTCAGATGGTTTTACAGCTCCGAG  350

seq1  TGGGTGCTGGGAACCAAACCCAGGTGCTCTGCAAGAGCAGCGAGTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGGAACCAAACCCAGGTGCTCTGCAAGAGCAGCGAGTGCTTT  400

seq1  TAACCACTGGGCCATCGCTCCAGCCCTTCCTCTGTGGGTTATACTGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGGGCCATCGCTCCAGCCCTTCCTCTGTGGGTTATACTGGTTT  450

seq1  TCAGGGTCTCAGGTGGTCAGGTTGGCCTCGAACTCTCTACATAGCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCTCAGGTGGTCAGGTTGGCCTCGAACTCTCTACATAGCCAAGG  500

seq1  ATGACATTGAACATCTGATCCTCTTGCCTCTACTATCCAAGCGCTGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTGAACATCTGATCCTCTTGCCTCTACTATCCAAGCGCTGGGAC  550

seq1  CATAGATGTGTACAGCACGCCCGGTTTATATGAAGCTGGAGCGTGAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGTGTACAGCACGCCCGGTTTATATGAAGCTGGAGCGTGAACCC  600

seq1  AGAGCCTCAGGCAAGCTAGGCAAATGCTGTGCTTACAGAGCTACATGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCAGGCAAGCTAGGCAAATGCTGTGCTTACAGAGCTACATGCCC  650

seq1  TCCCTGCGTTTACAGGCCTGTGATGTCCAACTGAGGCTCTAGGCGCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCGTTTACAGGCCTGTGATGTCCAACTGAGGCTCTAGGCGCTGGC  700

seq1  TTTTCCTCTTCCTCAAACCCGAGAGCATAAGAATATTGAGAGCTCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTCCTCAAACCCGAGAGCATAAGAATATTGAGAGCTCCATTT  750

seq1  CTATGACCTTCCTGTGGACAGTTCCCCATCAGTGAGAATAGTGACCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCTTCCTGTGGACAGTTCCCCATCAGTGAGAATAGTGACCAGTG  800

seq1  GCCGACTTCTGGCAAAAGATGCCTTTCTGTGCCCACCGCTTGCTGTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTTCTGGCAAAAGATGCCTTTCTGTGCCCACCGCTTGCTGTAGAG  850

seq1  GCGGGGTCTCAACTTCTCCTCAGCTACGGGGTCACTAAAGCTCAATGGGT  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCGGGGTCTCAACTTCTCCTCAGCTACAGGGTCACTAAAGCTCAATGGGT  900

seq1  CTGACTTAGGTCAAAACTCTCATTTAAGGTTTTAATTTAATTTAGCTTAA  950
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CTGACTTAGGTCAAAACTCTCATTTAA-GTTTTAATTTAATTTAGC-TAA  948

seq1  CATTAATAACCTTCACGTGCCTGAACGCCCCTTCACCAAG-AGAAGCCCT  999
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  CATTAATAACCTTCACGTGCCTGAACG-CCCTTCACCAAGAAGAAGCCCT  997

seq1  CTCCGTGGCTGGCCACCCAGGGCTCTATAACCCCTGGAAAGATGGTCCAG  1049
      |||||||||||  |||||| |||||||||||||   ||||||||||||| 
seq2  CTCCGTGGCTG--CACCCA-GGCTCTATAACCC--TGAAAGATGGTCCAA  1042

seq1  GGGTTAAAACATGTTTGTTCTTGCTGAGGACCTGGGTTCAGGTCCCAGCA  1099
      ||||| ||||||||||||   |||||| || || |||||||   ||||||
seq2  GGGTT-AAACATGTTTGT--CTGCTGAAGAACT-GGTTCAG--TCCAGCA  1086

seq1  CCCACATGGTAGCTTGCAAACACCCATAAATCAAGTTTCAGAGGATTCAA  1149
      ||| ||||  ||| ||| ||||||||||||  ||||| |  || |||| |
seq2  CCCCCATGTAAGC-TGC-AACACCCATAAAATAAGTTCCGAAGAATTC-A  1133

seq1  CGCTCTCTTCTGACCTCTGCAGACACCAGACACGTATTTGGTG  1192
      ||||||| ||||||||||||||| |||| | ||||||| ||||
seq2  CGCTCTC-TCTGACCTCTGCAGA-ACCA-AAACGTATTGGGTG  1173

seq1: chr9_108161080_108161578
seq2: B6Ng01-131N11.g_70_568 (reverse)

seq1  AAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCA  50

seq1  CCACTGCCAGGCCTCTTTTATTTCTTGAACCTTCCATAAAATGAGCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCAGGCCTCTTTTATTTCTTGAACCTTCCATAAAATGAGCCTAT  100

seq1  TGTCACCTGCCATTCCAGTACATTAATGCCTTCTTCATCAAGGCTATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTGCCATTCCAGTACATTAATGCCTTCTTCATCAAGGCTATAAA  150

seq1  TCCTAGCACTCAGCAAAGGCATGCCTAAGCGACAGACTGAATGCCATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCACTCAGCAAAGGCATGCCTAAGCGACAGACTGAATGCCATGCT  200

seq1  AACCTGAGCTACTGTGAGACTTGGGGGGGCGGGGGGGGAGTTATGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGCTACTGTGAGACTTGGGGGGGCGGGGGGGGAGTTATGGAAGC  250

seq1  CAGTCACGATGGTACAGACTCCTAATTCTACTGCTCCAGATACTGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACGATGGTACAGACTCCTAATTCTACTGCTCCAGATACTGACATG  300

seq1  GGAGGACTGCAAGTCTGCAGCTAGCTTGAGCTAGTAAGAGTTTGCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACTGCAAGTCTGCAGCTAGCTTGAGCTAGTAAGAGTTTGCCTCAA  350

seq1  AAAAACAAAACTGGGGGATAAGAGGTAGCAATGTAGTTGGGGTAGCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACTGGGGGATAAGAGGTAGCAATGTAGTTGGGGTAGCTCAA  400

seq1  GGTAAAGTCCCTGCCTAGGATGAACAAGTGGCTCATCAATCCTACCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTCCCTGCCTAGGATGAACAAGTGGCTCATCAATCCTACCAGTT  450

seq1  ACAAAGACACAAAGTGTTCTTCGTAGCCAAAGTGATAGCTCTGGAATTC  499
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACACAAAGTGTTCTTCGTAGCCAAAGTGATAGCTCTGGAATTC  499