BAC Information

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BAC

Clone NameB6Ng01-131P18
Chromosome9 (Build37)
Map Location 80,364,841 - 80,475,557
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131P18.bB6Ng01-131P18.g
ACCDH932906DH932907
length1,134903
definitionDH932906|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P18, 5' end.DH932907|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,474,409 - 80,475,557)(80,364,841 - 80,365,743)
sequence
gaattcctcatagtttcaatccaggatggaatgggtcactctgtttacga
acatcagtttaccctttagctttgtggccagtttgggtcccaagctgcca
ttttgctttactttgaattatgaaacttgtgagaaaggatgttcttgctg
aaagaccagtgttgaagccttaagctctccctgtgaggataggtctcccc
tcccagtgctctaactgctctccctgtgaggataggtctcccctcccagt
gctctaactgctctccctgtgaggataggtctcccctcccagtgctctaa
ctgctctccctgtgaggataggtctcccctcccagtgctctaactgctct
ccctgtgaggagaggtctcccctcccagtgctctactttctgattcatga
gcaatgttgtatcttctctggaagtttagggcttatcatgtgggtttaca
tgatagcaatgaacctaacattgaacagtccacttcttaaaagttcttta
gcactcccaagctgctcaaaatgtcattgtctccattcgcctgtctacta
gaataccacacaagggcagagatttttatctattcatgaatgcatttttg
aaacttagaactgtatctttcccaagttggggtatttgtgcactggagca
agaatcctccagaatcctccatccacctgtcagcccctctggcttctaga
ctcccttccaggatctccactcagatctccctcttccttttcttcagaag
aacctgtccatctcaaagatcattgatattgactgatgaagacccctctt
gccccctgcttcaaatcagggaaaaactggcagagactacgattttgggc
ttctgttcccttcaagttccggcaaactctagtgtggaattaaaataact
tacctttattcaactagtcacagattgcagaaatgtttgtctatttaaag
tagttgggatggctatgcataattaacaattatgcttcctattttagaac
catggtatatttcatggaaaatatcaatctactgcctcaagtttcaaaac
agtaatttattttgcataatgaaaggcatagtgcatctctactgtaaaat
acacattaggcactttaaccttcttgatccctca
gaattcagcatagcgacacactattggcttattcaaacatcagcaaaaga
atatgtgcaggtcagggtgtcagagttctgtgagttggatgtttatcaat
gctagcagagtatctggtcaatttatgactttaaactgagtcaaagggca
atggacagagggaggtgctgggccagatggttgttgactcagttcagata
gccctgttatgtcctcacattcctctttatctttatggtcaagctgttcc
caggaatgctttaatgacggggcatgcccaggtttgtccttctttgttct
caaccccaggcagcctctaggctcacaaataaccagcaatttctgagtac
tttatatgacttacaggtattgaaatttcatctttctttcaaaagcacat
ttcttgttaagagtgttcaagtcgccaggcgcggtgacgcatacctttaa
tcccagcactcaggaggcagaggcagaggcaggtggatttctgagttgga
ggccagcctggtctacagagtgagttccaggacagccagggctatacaga
gaaaccctgtctcaaaaaaacaaaaaaccaaaacaaacaaaaaaaaagtg
ttcaagtcgggcagtggtggcacacgcctttgatcccagcacttgggagg
cagaggcaggcggatttctgagttcgaggccagcctggtctacagagtga
gtttcaggacagtcagggctgtatagagaaactctgtctcgaaaacaaac
aaacaaacaaacaaacaaacaaacaaaacaaaaacaaaacagagtgttca
gaggcagagcagggggcatggggtgagttgtgtgtttgtggcaggtctaa
aggaacagtagaaggagggagaagaggagagaatatagaggcaggatgcg
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80474409_80475557
seq2: B6Ng01-131P18.b_46_1179 (reverse)

seq1  TGAGGGATCAAGAA-GTATAAGTGCTAAATGTGTTATTTTACAGTAGGAG  49
      |||||||||||||| ||  ||||||  |||||| |||||||||||| |||
seq2  TGAGGGATCAAGAAGGTTAAAGTGCCTAATGTG-TATTTTACAGTA-GAG  48

seq1  ATGGCACTATGCTTTCTATTTAATGCAAAAATAAAATACTGTTTTGGAAA  99
      || ||||||||| ||  |||  |||| |||||||| ||||||||||  ||
seq2  AT-GCACTATGCCTTTCATT--ATGC-AAAATAAATTACTGTTTTG--AA  92

seq1  ACTTTTGAGGCAGTAGATTGATATTTTCCATGAAATTATACCATGGTTCT  149
      ||  ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AC--TTGAGGCAGTAGATTGATATTTTCCATGAAA-TATACCATGGTTCT  139

seq1  AAAAATAGGAAGCATAATTTTGTAAATTATGCATAGCCCATCCCAACTAC  199
       ||||||||||||||||  |||| |||||||||||| |||||||||||||
seq2  -AAAATAGGAAGCATAA--TTGTTAATTATGCATAG-CCATCCCAACTAC  185

seq1  TTTAAATAGACAAACATTTCTGCAATCTGTGACTAGTTGAATAAAGGTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGACAAACATTTCTGCAATCTGTGACTAGTTGAATAAAGGTAA  235

seq1  GTTATTTTAATTCCACACTAGAGTTTTGCCGGAACTTGAAGGGAACAGAA  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTATTTTAATTCCACACTAGAG-TTTGCCGGAACTTGAAGGGAACAGAA  284

seq1  GCCCAAAATCGTAGTCTCTGCCAGTTTTTCCCTGATTTGAAGCAGGGGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAATCGTAGTCTCTGCCAGTTTTTCCCTGATTTGAAGCAGGGGGC  334

seq1  AAGAGGGGTCTTCATCAGTCAATATCAATGATCTTTGAGATGGACAGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGTCTTCATCAGTCAATATCAATGATCTTTGAGATGGACAGGTT  384

seq1  CTTCTGAAGAAAAGGAAGAGGGAGATCTGAGTGGAGATCCTGGAAGGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAGAAAAGGAAGAGGGAGATCTGAGTGGAGATCCTGGAAGGGAG  434

seq1  TCTAGAAGCCAGAGGGGCTGACAGGTGGATGGAGGATTCTGGAGGATTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGCCAGAGGGGCTGACAGGTGGATGGAGGATTCTGGAGGATTCT  484

seq1  TGCTCCAGTGCACAAATACCCCAACTTGGGAAAGATACAGTTCTAAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGTGCACAAATACCCCAACTTGGGAAAGATACAGTTCTAAGTTT  534

seq1  CAAAAATGCATTCATGAATAGATAAAAATCTCTGCCCTTGTGTGGTATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGCATTCATGAATAGATAAAAATCTCTGCCCTTGTGTGGTATTC  584

seq1  TAGTAGACAGGCGAATGGAGACAATGACATTTTGAGCAGCTTGGGAGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGACAGGCGAATGGAGACAATGACATTTTGAGCAGCTTGGGAGTGC  634

seq1  TAAAGAACTTTTAAGAAGTGGACTGTTCAATGTTAGGTTCATTGCTATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTTTTAAGAAGTGGACTGTTCAATGTTAGGTTCATTGCTATCA  684

seq1  TGTAAACCCACATGATAAGCCCTAAACTTCCAGAGAAGATACAACATTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCCACATGATAAGCCCTAAACTTCCAGAGAAGATACAACATTGC  734

seq1  TCATGAATCAGAAAGTAGAGCACTGGGAGGGGAGACCTCTCCTCACAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATCAGAAAGTAGAGCACTGGGAGGGGAGACCTCTCCTCACAGGG  784

seq1  AGAGCAGTTAGAGCACTGGGAGGGGAGACCTATCCTCACAGGGAGAGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTTAGAGCACTGGGAGGGGAGACCTATCCTCACAGGGAGAGCAG  834

seq1  TTAGAGCACTGGGAGGGGAGACCTATCCTCACAGGGAGAGCAGTTAGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCACTGGGAGGGGAGACCTATCCTCACAGGGAGAGCAGTTAGAGC  884

seq1  ACTGGGAGGGGAGACCTATCCTCACAGGGAGAGCAGTTAGAGCACTGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGGGGAGACCTATCCTCACAGGGAGAGCAGTTAGAGCACTGGGA  934

seq1  GGGGAGACCTATCCTCACAGGGAGAGCTTAAGGCTTCAACACTGGTCTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACCTATCCTCACAGGGAGAGCTTAAGGCTTCAACACTGGTCTTT  984

seq1  CAGCAAGAACATCCTTTCTCACAAGTTTCATAATTCAAAGTAAAGCAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAACATCCTTTCTCACAAGTTTCATAATTCAAAGTAAAGCAAAA  1034

seq1  TGGCAGCTTGGGACCCAAACTGGCCACAAAGCTAAAGGGTAAACTGATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTTGGGACCCAAACTGGCCACAAAGCTAAAGGGTAAACTGATGT  1084

seq1  TCGTAAACAGAGTGACCCATTCCATCCTGGATTGAAACTATGAGGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAAACAGAGTGACCCATTCCATCCTGGATTGAAACTATGAGGAATTC  1134

seq1: chr9_80364841_80365743
seq2: B6Ng01-131P18.g_70_972

seq1  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAAAAGA  50

seq1  ATATGTGCAGGTCAGGGTGTCAGAGTTCTGTGAGTTGGATGTTTATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCAGGTCAGGGTGTCAGAGTTCTGTGAGTTGGATGTTTATCAAT  100

seq1  GCTAGCAGAGTATCTGGTCAATTTATGACTTTAAACTGAGTCAAAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGAGTATCTGGTCAATTTATGACTTTAAACTGAGTCAAAGGGCA  150

seq1  ATGGACAGAGGGAGGTGCTGGGCCAGATGGTTGTTGACTCAGTTCAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGAGGGAGGTGCTGGGCCAGATGGTTGTTGACTCAGTTCAGATA  200

seq1  GCCCTGTTATGTCCTCACATTCCTCTTTATCTTTATGGTCAAGCTGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTATGTCCTCACATTCCTCTTTATCTTTATGGTCAAGCTGTTCC  250

seq1  CAGGAATGCTTTAATGACGGGGCATGCCCAGGTTTGTCCTTCTTTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGCTTTAATGACGGGGCATGCCCAGGTTTGTCCTTCTTTGTTCT  300

seq1  CAACCCCAGGCAGCCTCTAGGCTCACAAATAACCAGCAATTTCTGAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAGGCAGCCTCTAGGCTCACAAATAACCAGCAATTTCTGAGTAC  350

seq1  TTTATATGACTTACAGGTATTGAAATTTCATCTTTCTTTCAAAAGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGACTTACAGGTATTGAAATTTCATCTTTCTTTCAAAAGCACAT  400

seq1  TTCTTGTTAAGAGTGTTCAAGTCGCCAGGCGCGGTGACGCATACCTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTAAGAGTGTTCAAGTCGCCAGGCGCGGTGACGCATACCTTTAA  450

seq1  TCCCAGCACTCAGGAGGCAGAGGCAGAGGCAGGTGGATTTCTGAGTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTCAGGAGGCAGAGGCAGAGGCAGGTGGATTTCTGAGTTGGA  500

seq1  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGA  550

seq1  GAAACCCTGTCTCAAAAAAACAAAAAACCAAAACAAACAAAAAAAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCAAAAAAACAAAAAACCAAAACAAACAAAAAAAAAGTG  600

seq1  TTCAAGTCGGGCAGTGGTGGCACACGCCTTTGATCCCAGCACTTGGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCGGGCAGTGGTGGCACACGCCTTTGATCCCAGCACTTGGGAGG  650

seq1  CAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  700

seq1  GTTTCAGGACAGTCAGGGCTGTATAGAGAAACTCTGTCTCGAAAACAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGACAGTCAGGGCTGTATAGAGAAACTCTGTCTCGAAAACAAAC  750

seq1  AAACAAACAAACAAACAAACAAACAAAACAAAAACAAAAACAGAGTGTTC  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACAAACAAACAAACAAACAAACAAAACAAAAAC-AAAACAGAGTGTTC  799

seq1  AGAGGCAGAGCAGGGGGCAT-GGGTGAGTTGTGTGTTTGTGGCAGGTCTA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAGGCAGAGCAGGGGGCATGGGGTGAGTTGTGTGTTTGTGGCAGGTCTA  849

seq1  AAGGAACAGTAAGAAGGAGGGAG-AGAGGAGAGAATAGAGAGGCAGGATG  898
      |||||||||| |||||||||||| ||||||||||||| ||||||||||||
seq2  AAGGAACAGT-AGAAGGAGGGAGAAGAGGAGAGAATATAGAGGCAGGATG  898

seq1  CGGGA  903
      |||||
seq2  CGGGA  903