BAC Information

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BAC

Clone NameB6Ng01-132I08
Chromosome3 (Build37)9 (Build37)
Map Location 58,148,972 - 58,150,1769,921,091 - 9,921,557
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132I08.bB6Ng01-132I08.g
ACCDH933302DH933303
length1,163288
definitionDH933302|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I08, 5' end.DH933303|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,148,972 - 58,150,176)(9,921,091 - 9,921,557)
sequence
gaattcattgtaatgacttacagtctgtagtccaactaacccaacaatgg
tcagctgtgaatgggaagttcaagaatctagtagttgctcagtctcatga
ggctagttgtttaagctggtcttctgtagaagtaggttacaactgatatg
ttggcaagtaagtgcaagcaggtgaagaaaagttgatcttctttcttcca
atgtccttatgtatggctccagaagaaagtgtggcccagattaaagatgt
gtaccaccatgcttggatctgggacttactttgtctcagcctgaccttga
actcagagatctccttgcctcctgggattaaaggaatgtactaccttgcc
tgggcctatgctttttatggctactatgcctcaagatcttcatgccaaga
tccaggtcagaaacttgtgtcctctagcctcaagatcacagtaacacata
gagaagaagatcaccattaattcctgaagacatctctttgagggatgcaa
cagaaagagaaatagggaaagatttccccgactctggagtgtttttctat
tgctatgttgctagtttcctgagaattgctagaagcaaggcctttctaaa
tcatctctgaagcccagcagtgcagaaagtgaataggatgaagacaactc
tacaaaactgttcacccaaaagcaactagagataacggctcagtgggtga
cacttacacagctcttcccagtgagggaaccactagctatggaggctaat
gagcacttcatcttgactagtccaaataaagatgtgttgggagtttaaaa
tattcatggatttcacgctggagagatggctcagcagttaagagcaccca
ctgctcttccagaggtcctgagttcaaatcccagcaaccacatggtggct
cacaaccatctgtaatgggatctgatgtcctcttctgatgtgtctgagac
agctacagaactcatatatataataataatgatctttaaaatatatcatg
gatttcagagggcttaaaatacaaaagagctagtactgctagattatgtg
acttaatatttaatattttatacctaaattagttttgaaacttacattct
ataaatttgtcactgaaatagttatatacatatatattttatgttccact
tatatatcatggt
taggacaggaaaggaggagtgggtgggttagtgaacagggggagggagca
tgggatagggggttttcagaggggaaatgaggaaaggggataaaatttga
aatgtaaataaagaaaatatctaataaaaagagaaagggaaaaatatggt
cataatatagttcatgtaaaaattttaaaatagaaatatgggccaggtgg
tggtagtgcacaccttttatcccatcacttgggaggcagagacaggagga
tttctgagttcgaggccagcctgttctacaaagtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_58148972_58150176
seq2: B6Ng01-132I08.b_48_1210 (reverse)

seq1  ACCATGATATATTATTTTATGTTGTAACATTATAATATAATATTGTATAT  50
      |||||||||||| |        || |||| || ||||| ||| |||||||
seq2  ACCATGATATATAA-------GTGGAACA-TAAAATAT-ATA-TGTATAT  40

seq1  AATACTAAATTTTTAAGTTGACAAATTTTAATAGGAATGGTTAAGTTTCA  100
      |  ||||    ||| || ||||||||||  ||| |||||  |||||||||
seq2  A--ACTA----TTTCAG-TGACAAATTT--ATA-GAATG--TAAGTTTCA  78

seq1  TAATACTTAATTTA-GTATAATATATTTAAATATTAAGTCAACATAATTC  149
       ||    ||||||| |||||| ||| |||||||||||||| |||||| ||
seq2  AAA---CTAATTTAGGTATAAAATA-TTAAATATTAAGTC-ACATAA-TC  122

seq1  TAAGCAAGTACTAAGCTCTTTTGTATTTTTAAGCCCTCTTTGAAATCCAT  199
      | ||| |||||| |||||||||||| ||||||||||||  ||||||||||
seq2  T-AGC-AGTACT-AGCTCTTTTGTA-TTTTAAGCCCTC--TGAAATCCAT  166

seq1  GAATATATTTTTAAAAGATTTATTTATTTATTTTATATATATGAGTTCTG  249
      | |||||||||  |||||     | |||  | ||||||||||||||||||
seq2  G-ATATATTTT--AAAGA-----TCATTATTATTATATATATGAGTTCTG  208

seq1  TAGCTGTCTTCAGACACATCAGAAGAGGACATCAGATCCCATTACAGATG  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTC-TCAGACACATCAGAAGAGGACATCAGATCCCATTACAGATG  257

seq1  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAA  307

seq1  GAGCAGTGGGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCTGAAATCCA  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGCAGTGGGTGCTCTTAACTGCTGAGCCATCTCTCCAGCGTGAAATCCA  357

seq1  TGAATATTTTAAACTCCCAACACATCTTTATTTGGACTAGTCAAGATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTTAAACTCCCAACACATCTTTATTTGGACTAGTCAAGATGAA  407

seq1  GTGCTCATTAGCCTCCATAGCTAGTGGTTCCCTCACTGGGAAGAGCTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATTAGCCTCCATAGCTAGTGGTTCCCTCACTGGGAAGAGCTGTG  457

seq1  TAAGTGTCACCCACTGAGCCGTTATCTCTAGTTGCTTTTGGGTGAACAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCACCCACTGAGCCGTTATCTCTAGTTGCTTTTGGGTGAACAGT  507

seq1  TTTGTAGAGTTGTCTTCATCCTATTCACTTTCTGCACTGCTGGGCTTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAGTTGTCTTCATCCTATTCACTTTCTGCACTGCTGGGCTTCAG  557

seq1  AGATGATTTAGAAAGGCCTTGCTTCTAGCAATTCTCAGGAAACTAGCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTTAGAAAGGCCTTGCTTCTAGCAATTCTCAGGAAACTAGCAAC  607

seq1  ATAGCAATAGAAAAACACTCCAGAGTCGGGGAAATCTTTCCCTATTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATAGAAAAACACTCCAGAGTCGGGGAAATCTTTCCCTATTTCTC  657

seq1  TTTCTGTTGCATCCCTCAAAGAGATGTCTTCAGGAATTAATGGTGATCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGCATCCCTCAAAGAGATGTCTTCAGGAATTAATGGTGATCTT  707

seq1  CTTCTCTATGTGTTACTGTGATCTTGAGGCTAGAGGACACAAGTTTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATGTGTTACTGTGATCTTGAGGCTAGAGGACACAAGTTTCTGA  757

seq1  CCTGGATCTTGGCATGAAGATCTTGAGGCATAGTAGCCATAAAAAGCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCTTGGCATGAAGATCTTGAGGCATAGTAGCCATAAAAAGCATA  807

seq1  GGCCCAGGCAAGGTAGTACATTCCTTTAATCCCAGGAGGCAAGGAGATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGCAAGGTAGTACATTCCTTTAATCCCAGGAGGCAAGGAGATCT  857

seq1  CTGAGTTCAAGGTCAGGCTGAGACAAAGTAAGTCCCAGATCCAAGCATGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGTCAGGCTGAGACAAAGTAAGTCCCAGATCCAAGCATGG  907

seq1  TGGTACACATCTTTAATCTGGGCCACACTTTCTTCTGGAGCCATACATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACACATCTTTAATCTGGGCCACACTTTCTTCTGGAGCCATACATAA  957

seq1  GGACATTGGAAGAAAGAAGATCAACTTTTCTTCACCTGCTTGCACTTACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGGAAGAAAGAAGATCAACTTTTCTTCACCTGCTTGCACTTACT  1007

seq1  TGCCAACATATCAGTTGTAACCTACTTCTACAGAAGACCAGCTTAAACAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACATATCAGTTGTAACCTACTTCTACAGAAGACCAGCTTAAACAA  1057

seq1  CTAGCCTCATGAGACTGAGCAACTACTAGATTCTTGAACTTCCCATTCAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCATGAGACTGAGCAACTACTAGATTCTTGAACTTCCCATTCAC  1107

seq1  AGCTGACCATTGTTGGGTTAGTTGGACTACAGACTGTAAGTCATTACAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACCATTGTTGGGTTAGTTGGACTACAGACTGTAAGTCATTACAAT  1157

seq1  GAATTC  1205
      ||||||
seq2  GAATTC  1163

seq1: chr9_9921091_9921557
seq2: B6Ng01-132I08.g_246_363

seq1  AATTTTAAAATAGAAAGCCTTAACACTTATGAATAAGAAACAAAGTACAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTACAAAAGAAAAAAAATCTCCATATTAAAATGGCTAATTATATTTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGTATTTTGATTAATTTTCATTTTGTTAAAAATCATATGGTCATTTAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTACACAAATGAAAAAAGACACTAATATTAAAATCAGTCTTCAAAATGGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGATGTATTAGTTAAAATTTGAGTGATTACAAATCCTTATTTACTAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGAAGAGGAGAGTTCGGCTTCAGCGCTGCTTGGCTTCAAGTCAGTTAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GGATTAATGAAGAGTTTTTGCAATCAGTAATTTATATTGATTCAGTGACA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTATTTTATACCAATATATATTTTTAAAACTTG--GCTA-TG-----  392
           ||||||    |||| | || |     |  ||  | || ||     
seq2  ----AATTTTA---AAATAGAAATATGGGCCAGGTGGTGGTAGTGCACAC  43

seq1  CTTTAATTCCAGCACATGGGAGGCAGAGGCAGGCGGATTTCTGAGTTGGA  442
      |||| || ||| ||| |||||||||||| |||| ||||||||||||| ||
seq2  CTTTTATCCCATCACTTGGGAGGCAGAGACAGGAGGATTTCTGAGTTCGA  93

seq1  GGCCAGCCTGGTCTACAAAGTGAGT  467
      |||||||||| ||||||||||||||
seq2  GGCCAGCCTGTTCTACAAAGTGAGT  118