BAC Information

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BAC

Clone NameB6Ng01-132J17
Chromosome9 (Build37)
Map Location 120,195,162 - 120,304,999
singlet/doubletdoublet
Overlap geneMyrip, LOC666044
Upstream geneOxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898
Downstream geneEif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132J17.bB6Ng01-132J17.g
ACCDH933367DH933368
length4121,075
definitionDH933367|Mus musculus domesticus DNA, BAC clone: B6Ng01-132J17, 5' end.DH933368|Mus musculus domesticus DNA, BAC clone: B6Ng01-132J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,195,162 - 120,195,573)(120,303,912 - 120,304,999)
sequence
gaattcactaggcctcaagatctccatgccaagatccagatcagaaactt
ttatctccagcctccagattaggatcactggttgagccttccaattctag
attgcagttcattccagatatcgtcaagttgacaaccaggaatagccact
acaggtactatcatgtctgtcgactcgaaggtaaccccccctgggaacga
atgctgaacttgggatcgtcaccccgtggccgtcattctaaaaccatctg
ccatacgtgctaactttgaacatgcaagcaaacacttagggtggggagct
aaaaagaagcttgtcatgccggctggtaattgaccacaaaatcaagatgc
tcaattttttttttactattttatttatttattgtgtgtgtgtgtgtgta
tgtatgtgtgtg
gaattcatgttattcctcagacaatcatctctctcatgggcactggctac
tgcatactcatctgctctcatgggcactggctacctgcagttgagttcag
ctttagaaagacggcactatactgagttgaattcagacagactgctgtgg
aggtgtgttaaattgtgatttacacaatgagaggacagggctaaacctgg
gtctggcggacaatgatagtgtttcaaacactagcattcgcaaggcacaa
cgcacttgcagccacccagacagcagtcagttgtaaataaacaccctgcc
ctgcgctgttaatgcaagccctccggtgctctccacgggatcctttacaa
actgctggctaaaacattgatgaagcagcagcagtggatttagaacgact
tcaccagcactcagactgctttcctcttgcctactgcctcagtgaatcac
ccgagggagtggaggggcccgagcttttctttcctgctaatcactctaaa
gctgcaccctcagccggtgagtatttgagtccatctcacatcacaggatg
gttgtgggaggatgaaagatacaaacacagtattttatacagagttgtta
tctggcttttaaggcgaaacagtctttgctgggtgaacactgtatacaat
gtgtcctcaatagaaacttttaaggaaaccggaggaaaacatctaaaacc
ctcaaaatacttagctctcctaaaacaaagcatcccctctctttgtgcgt
gctgggaggaggggcagaggttgacgtcctcaattgctgttcattttgaa
ttttgtgacaaagttcctctggcctatagtttgcacagaaaggctaggct
gactggtctgtgagtcccaggtgtcctcctgtctctgcctccccagtaca
ggaatatgaatgtgcaccactatgtctgactttctgctcttaacatgggt
ccaggctcagctcatgccattctttagcactaagcatgtcttcaggcttt
cagattttcttctatgtaatgagtttcaaagagaggcagacatgttcagc
tggtgggagtgatgtcatcactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120195162_120195573
seq2: B6Ng01-132J17.b_41_452

seq1  GAATTCACTAGGCCTCAAGATCTCCATGCCAAGATCCAGATCAGAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGCCTCAAGATCTCCATGCCAAGATCCAGATCAGAAACTT  50

seq1  TTATCTCCAGCCTCCAGATTAGGATCACTGGTTGAGCCTTCCAATTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCAGCCTCCAGATTAGGATCACTGGTTGAGCCTTCCAATTCTAG  100

seq1  ATTGCAGTTCATTCCAGATATCGTCAAGTTGACAACCAGGAATAGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTTCATTCCAGATATCGTCAAGTTGACAACCAGGAATAGCCACT  150

seq1  ACAGGTACTATCATGTCTGTCGACTCGAAGGTAACCCCCCCTGGGAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACTATCATGTCTGTCGACTCGAAGGTAACCCCCCCTGGGAACGA  200

seq1  ATGCTGAACTTGGGATCGTCACCCCGTGGCCGTCATTCTAAAACCATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAACTTGGGATCGTCACCCCGTGGCCGTCATTCTAAAACCATCTG  250

seq1  CCATACGTGCTAACTTTGAACATGCAAGCAAACACTTAGGGTGGGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACGTGCTAACTTTGAACATGCAAGCAAACACTTAGGGTGGGGAGCT  300

seq1  AAAAAGAAGCTTGTCATGCCGGCTGGTAATTGACCACAAAATCAAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGCTTGTCATGCCGGCTGGTAATTGACCACAAAATCAAGATGC  350

seq1  TCAATTTTTTTTTTACTATTTTATTTATTTATTGTGTGTGTGTGTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTTTTTTACTATTTTATTTATTTATTGTGTGTGTGTGTGTGTA  400

seq1  TGTATGTGTGTG  412
      ||||||||||||
seq2  TGTATGTGTGTG  412

seq1: chr9_120303912_120304999
seq2: B6Ng01-132J17.g_65_1139 (reverse)

seq1  CTCAGTGATGAACATCACCTTCCACACCAGCTGACCAATGTCCTGCCCTC  50
      |||||||||| |||||||  ||| |||||||||| | |||| ||| ||||
seq2  CTCAGTGATG-ACATCAC--TCC-CACCAGCTGAAC-ATGT-CTG-CCTC  43

seq1  TCTGTGAAACCTCATTACATAGAAGAAAATCTGAAAGCCCTGAAGACATG  100
      ||| ||||| ||||||||||||||||||||||||||| ||||||||||| 
seq2  TCTTTGAAA-CTCATTACATAGAAGAAAATCTGAAAG-CCTGAAGACAT-  90

seq1  GCTTAGTTGCTAAAG-ATGGCATGAGCTGGAGCCCTGGACCCCATGTTAA  149
      |||||| |||||||| |||||||||||| ||| |||||| ||||||||||
seq2  GCTTAG-TGCTAAAGAATGGCATGAGCT-GAG-CCTGGA-CCCATGTTAA  136

seq1  GAGCAGAAAGTCAGACATAGTGGTGCACATTCATAATTCCTGTACTGGGG  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGCAGAAAGTCAGACATAGTGGTGCACATTCAT-ATTCCTGTACTGGGG  185

seq1  AGGCAGAGACAGGAGGACACCTGGGACTCACAGACCAGTCAGCCTAGCC-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGCAGAGACAGGAGGACACCTGGGACTCACAGACCAGTCAGCCTAGCCT  235

seq1  TTCTGTGCAAACTATAGGCCAGAGGAACTTTGTCACAAAATTCAAAATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCAAACTATAGGCCAGAGGAACTTTGTCACAAAATTCAAAATGA  285

seq1  ACAGCAATTGAGGACGTCAACCTCTGCCCCTCCTCCCAGCACGCACAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATTGAGGACGTCAACCTCTGCCCCTCCTCCCAGCACGCACAAAG  335

seq1  AGAGGGGATGCTTTGTTTTAGGAGAGCTAAGTATTTTGAGGGTTTTAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGATGCTTTGTTTTAGGAGAGCTAAGTATTTTGAGGGTTTTAGAT  385

seq1  GTTTTCCTCCGGTTTCCTTAAAAGTTTCTATTGAGGACACATTGTATACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCCGGTTTCCTTAAAAGTTTCTATTGAGGACACATTGTATACA  435

seq1  GTGTTCACCCAGCAAAGACTGTTTCGCCTTAAAAGCCAGATAACAACTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACCCAGCAAAGACTGTTTCGCCTTAAAAGCCAGATAACAACTCT  485

seq1  GTATAAAATACTGTGTTTGTATCTTTCATCCTCCCACAACCATCCTGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATACTGTGTTTGTATCTTTCATCCTCCCACAACCATCCTGTGA  535

seq1  TGTGAGATGGACTCAAATACTCACCGGCTGAGGGTGCAGCTTTAGAGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGGACTCAAATACTCACCGGCTGAGGGTGCAGCTTTAGAGTGA  585

seq1  TTAGCAGGAAAGAAAAGCTCGGGCCCCTCCACTCCCTCGGGTGATTCACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGAAAGAAAAGCTCGGGCCCCTCCACTCCCTCGGGTGATTCACT  635

seq1  GAGGCAGTAGGCAAGAGGAAAGCAGTCTGAGTGCTGGTGAAGTCGTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTAGGCAAGAGGAAAGCAGTCTGAGTGCTGGTGAAGTCGTTCTA  685

seq1  AATCCACTGCTGCTGCTTCATCAATGTTTTAGCCAGCAGTTTGTAAAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTGCTGCTGCTTCATCAATGTTTTAGCCAGCAGTTTGTAAAGGA  735

seq1  TCCCGTGGAGAGCACCGGAGGGCTTGCATTAACAGCGCAGGGCAGGGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGGAGAGCACCGGAGGGCTTGCATTAACAGCGCAGGGCAGGGTGT  785

seq1  TTATTTACAACTGACTGCTGTCTGGGTGGCTGCAAGTGCGTTGTGCCTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAACTGACTGCTGTCTGGGTGGCTGCAAGTGCGTTGTGCCTTG  835

seq1  CGAATGCTAGTGTTTGAAACACTATCATTGTCCGCCAGACCCAGGTTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGCTAGTGTTTGAAACACTATCATTGTCCGCCAGACCCAGGTTTAG  885

seq1  CCCTGTCCTCTCATTGTGTAAATCACAATTTAACACACCTCCACAGCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTCTCATTGTGTAAATCACAATTTAACACACCTCCACAGCAGT  935

seq1  CTGTCTGAATTCAACTCAGTATAGTGCCGTCTTTCTAAAGCTGAACTCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAATTCAACTCAGTATAGTGCCGTCTTTCTAAAGCTGAACTCAA  985

seq1  CTGCAGGTAGCCAGTGCCCATGAGAGCAGATGAGTATGCAGTAGCCAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTAGCCAGTGCCCATGAGAGCAGATGAGTATGCAGTAGCCAGTG  1035

seq1  CCCATGAGAGAGATGATTGTCTGAGGAATAACATGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGAGAGATGATTGTCTGAGGAATAACATGAATTC  1075