BAC Information

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BAC

Clone NameB6Ng01-132N04
Chromosome9 (Build37)
Map Location 55,162,148 - 55,317,075
singlet/doubletdoublet
Overlap geneAI118078, Etfa
Upstream geneGldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
Downstream geneLOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132N04.bB6Ng01-132N04.g
ACCDH933529DH933530
length9201,110
definitionDH933529|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N04, 5' end.DH933530|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,316,159 - 55,317,075)(55,162,148 - 55,163,269)
sequence
gaattcacagtggctctggtttcttgcacaagatctggacaaaaccaagc
cactcaggattttggcatggataagaggggttcccacatgtacctgagga
gctattgatagttggtgacttttcttcaaggatgtggtctgagaggctac
ccaggctccagtaagtagatggtcctgtaaggcagcactaattcgactta
ttgtggtttttagaaaaggagagcatgtgggagagtggggagaatgtgat
caaaatacattctgtgattatataagatacccaaggaataaatttaaaat
atatgtgtaacacaaaataagccatatgaagtgtttcatacctgtagtgc
cagtgctgagaaggcagagatgggtgacactgaggcttactgtccaagtt
gaaatttagctcaaggttcagtgaaagaacttggctcaaaaaataaaggg
gaagaggattgaagaaaactcacagtattgacctctgtcctgaggctata
cacatataaagtagaaaggaaaaaaacccacctaaccatcaccattgaac
tttttcctgatctggtacacgtacatgttttattatttgtatcacagagg
atttgggcagcctcacttcattcaacccctttgaaaaataagaagtatcc
tttcctcaagttcctgtgctgccatctgttggaaagttattgtaataaaa
gtgtacattaatagtgactggcataaatggtgccttttctccagagttgc
tcagtgtacaacctgtttaactgtacaaagtagtcctaagtcttagagta
ctctacccagatccaccagtgaaattaggattttaaggtctgaacagatt
tcagactgtgagactgtgtgccttggaaaactaagatactttgctaaaga
ctgaacacctcaactctcaa
gaattctctgcccccagtgcaggggctgaagggccaatataggaatataa
gtcgtccactcatactcccaccttgtcttcccctttctgagcatgtatgt
tttccctaacatttcaggctctccccgaccaatactttggatatcctttc
cctttctctgaagctccgctccctgccctgtggctgcttgctggccatgt
gtctgacctccatgctggcagctcttccttctcttctccaggcagctgct
ttactgtacacctgccctttagtttgccttttaaacgctgataaaattat
ccttgtgtttccatgtgcatctattcttaaatgcctttattaatgagact
gagaaccccaaaagggacccggattatagcaacagaaagacagggaaatg
attctgtatatattcaggcttttgtgtcacctttttctgttcactgtaac
gctgtgataggcaaggcagagaaaactgggcttttcttctctacagtcta
gccaaaattaaacaaatccaactggttttaccaagccctggctcccaagt
gttttctaggtttggtggtttgatttgtttttttttttttttcagtaagc
atgggaaatcactgagaatacctaccacacatatagaagtaataattttt
aagaaaccaatctttatttggcaaaaattcagacattaactgaattgggg
gagaaaacctggggcagtgttccagaaaaaaatttcagatagagatgcgc
gttcacaaggaccagttgcatccaacccatccctgggatgactgtccttc
agattccagcttggcgggcttcctctccttcagatctgaacccatacatt
ctctaaagtgctcatgtttattaacaactgtttctatggcagcagagtcc
tcttttagggcccaggggtgggagctatttataagccaaagatgatagca
tgcaccatagcagctattagtggatgaaatcctttttgggatctttcata
aataatatggtaacaagacaaaaaataatcatggtgcatattgtttatca
acccatcggatctaattttgtctccatctggtcctctaactactacatag
agcctaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55316159_55317075
seq2: B6Ng01-132N04.b_49_968 (reverse)

seq1  TTGAGAGTTGA-GTGTTCAGTCTTTAGCAAAGTATC-TAGTTTTCCAAGG  48
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TTGAGAGTTGAGGTGTTCAGTCTTTAGCAAAGTATCTTAGTTTTCCAAGG  50

seq1  CACACAGTCTCACAGTCTGAAATCTGTTCAAACCTTAAATTCCTAATTTC  98
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  CACACAGTCTCACAGTCTGAAATCTGTTCAGACCTTAAAATCCTAATTTC  100

seq1  ACTGGTGGATCTGGGTAGAGTACTCTAAGACTTAGGACTACTTTGTACAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGATCTGGGTAGAGTACTCTAAGACTTAGGACTACTTTGTACAG  150

seq1  TTAAACAGGTTGTACACTGAGCAACTCTGGAG-AAAGGCACCATTTATGC  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAAACAGGTTGTACACTGAGCAACTCTGGAGAAAAGGCACCATTTATGC  200

seq1  CAGTCACTATTAATGTACACTTTTATTACAATAACTTTCCAACAGATGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTATTAATGTACACTTTTATTACAATAACTTTCCAACAGATGGC  250

seq1  AGCACAGGAACTTGAGGAAAGGATACTTCTTATTTTTCAAAGGGGTTGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGAACTTGAGGAAAGGATACTTCTTATTTTTCAAAGGGGTTGAA  300

seq1  TGAAGTGAGGCTGCCCAAATCCTCTGTGATACAAATAATAAAACATGTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAGGCTGCCCAAATCCTCTGTGATACAAATAATAAAACATGTAC  350

seq1  GTGTACCAGATCAGGAAAAAGTTCAATGGTGATGGTTAGGTGGGTTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCAGATCAGGAAAAAGTTCAATGGTGATGGTTAGGTGGGTTTTTT  400

seq1  TCCTTTCTACTTTATATGTGTATAGCCTCAGGACAGAGGTCAATACTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTACTTTATATGTGTATAGCCTCAGGACAGAGGTCAATACTGTG  450

seq1  AGTTTTCTTCAATCCTCTTCCCCTTTATTTTTTGAGCCAAGTTCTTTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTCAATCCTCTTCCCCTTTATTTTTTGAGCCAAGTTCTTTCAC  500

seq1  TGAACCTTGAGCTAAATTTCAACTTGGACAGTAAGCCTCAGTGTCACCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTGAGCTAAATTTCAACTTGGACAGTAAGCCTCAGTGTCACCCA  550

seq1  TCTCTGCCTTCTCAGCACTGGCACTACAGGTATGAAACACTTCATATGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTTCTCAGCACTGGCACTACAGGTATGAAACACTTCATATGGC  600

seq1  TTATTTTGTGTTACACATATATTTTAAATTTATTCCTTGGGTATCTTATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTGTTACACATATATTTTAAATTTATTCCTTGGGTATCTTATA  650

seq1  TAATCACAGAATGTATTTTGATCACATTCTCCCCACTCTCCCACATGCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAGAATGTATTTTGATCACATTCTCCCCACTCTCCCACATGCTC  700

seq1  TCCTTTTCTAAAAACCACAATAAGTCGAATTAGTGCTGCCTTACAGGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTAAAAACCACAATAAGTCGAATTAGTGCTGCCTTACAGGACC  750

seq1  ATCTACTTACTGGAGCCTGGGTAGCCTCTCAGACCACATCCTTGAAGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTACTGGAGCCTGGGTAGCCTCTCAGACCACATCCTTGAAGAAA  800

seq1  AGTCACCAACTATCAATAGCTCCTCAGGTACATGTGGGAACCCCTCTTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCAACTATCAATAGCTCCTCAGGTACATGTGGGAACCCCTCTTAT  850

seq1  CCATGCCAAAATCCTGAGTGGCTTGGTTTTGTCCAGATCTTGTGCAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAAAATCCTGAGTGGCTTGGTTTTGTCCAGATCTTGTGCAAGAA  900

seq1  ACCAGAGCCACTGTGAATTC  917
      ||||||||||||||||||||
seq2  ACCAGAGCCACTGTGAATTC  920

seq1: chr9_55162148_55163269
seq2: B6Ng01-132N04.g_67_1176

seq1  GAATTCTCTGCCCCCAGTGCAGGGGCTGAAGGGCCAATATAGGAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCCCAGTGCAGGGGCTGAAGGGCCAATATAGGAATATAA  50

seq1  GTCGTCCACTCATACTCCCACCTTGTCTTCCCCTTTCTGAGCATGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCCACTCATACTCCCACCTTGTCTTCCCCTTTCTGAGCATGTATGT  100

seq1  TTTCCCTAACATTTCAGGCTCTCCCCGACCAATACTTTGGATATCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAACATTTCAGGCTCTCCCCGACCAATACTTTGGATATCCTTTC  150

seq1  CCTTTCTCTGAAGCTCCGCTCCCTGCCCTGTGGCTGCTTGCTGGCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTGAAGCTCCGCTCCCTGCCCTGTGGCTGCTTGCTGGCCATGT  200

seq1  GTCTGACCTCCATGCTGGCAGCTCTTCCTTCTCTTCTCCAGGCAGCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCTCCATGCTGGCAGCTCTTCCTTCTCTTCTCCAGGCAGCTGCT  250

seq1  TTACTGTACACCTGCCCTTTAGTTTGCCTTTTAAACGCTGATAAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTACACCTGCCCTTTAGTTTGCCTTTTAAACGCTGATAAAATTAT  300

seq1  CCTTGTGTTTCCATGTGCATCTATTCTTAAATGCCTTTATTAATGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTTTCCATGTGCATCTATTCTTAAATGCCTTTATTAATGAGACT  350

seq1  GAGAACCCCAAAAGGGACCCGGATTATAGCAACAGAAAGACAGGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCCAAAAGGGACCCGGATTATAGCAACAGAAAGACAGGGAAATG  400

seq1  ATTCTGTATATATTCAGGCTTTTGTGTCACCTTTTTCTGTTCACTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATATATTCAGGCTTTTGTGTCACCTTTTTCTGTTCACTGTAAC  450

seq1  GCTGTGATAGGCAAGGCAGAGAAAACTGGGCTTTTCTTCTCTACAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATAGGCAAGGCAGAGAAAACTGGGCTTTTCTTCTCTACAGTCTA  500

seq1  GCCAAAATTAAACAAATCCAACTGGTTTTACCAAGCCCTGGCTCCCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATTAAACAAATCCAACTGGTTTTACCAAGCCCTGGCTCCCAAGT  550

seq1  GTTTTCTAGGTTTGGTGGTTTGATTTGTTTTTTTTTTTTTTTCAGTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGGTTTGGTGGTTTGATTTGTTTTTTTTTTTTTTTCAGTAAGC  600

seq1  ATGGGAAATCACTGAGAATACCTACCACACATATAGAAGTAATAATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAATCACTGAGAATACCTACCACACATATAGAAGTAATAATTTTT  650

seq1  AAGAAACCAATCTTTATTTGGCAAAAATTCAGACATTAACTGAATTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCAATCTTTATTTGGCAAAAATTCAGACATTAACTGAATTGGGG  700

seq1  GAGAAAACCTGGGGCAGTGTTCCAGAAAAAAATTTCAGATAGAGATGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACCTGGGGCAGTGTTCCAGAAAAAAATTTCAGATAGAGATGCGC  750

seq1  GTTCACAAGGACCAGTTGCATCCAACCCATCCCTGGGATGACTGTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAGGACCAGTTGCATCCAACCCATCCCTGGGATGACTGTCCTTC  800

seq1  AGGATTCCAGCTTTGGCGGGCTTCCTCTCCTTCAGATCTGAACCCATACA  850
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  A-GATTCCAGC-TTGGCGGGCTTCCTCTCCTTCAGATCTGAACCCATACA  848

seq1  TTCTCTAAAGTGCTCATGTTTATTAACAACTGTTTCTATGGCAGCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAAGTGCTCATGTTTATTAACAACTGTTTCTATGGCAGCAGAGT  898

seq1  CCTCTTTTTAGGGCCCAGGGGTGGGAGCTATTTATAAGCCAAAGAATGAT  950
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTC-TTTTAGGGCCCAGGGGTGGGAGCTATTTATAAGCCAAAG-ATGAT  946

seq1  AGCATGCACCAATAGCAGCTATTAGT-GATGAAATCC-TTTTGGGATCTC  998
      |||||||||| ||||||||||||||| |||||||||| ||||||||||| 
seq2  AGCATGCACC-ATAGCAGCTATTAGTGGATGAAATCCTTTTTGGGATCTT  995

seq1  TCATAAATAATATGGTAACAAGACAAAATATATTCAATGTGCATATTGTT  1048
      |||||||||||||||||||||||||||| ||| |||  ||||||||||||
seq2  TCATAAATAATATGGTAACAAGACAAAAAATAATCATGGTGCATATTGTT  1045

seq1  TATCAAAACCACATCCGGATTCTAATTTTGTCTCCCATCTTGGTCTACTG  1098
      ||||||   | ||| |||| ||||||||||||| ||||| |||||  || 
seq2  TATCAA---CCCAT-CGGA-TCTAATTTTGTCT-CCATC-TGGTCCTCTA  1088

seq1  ACTACATACATAGAAGCCTAGGTA  1122
      ||||| ||||||| ||||||||||
seq2  ACTAC-TACATAG-AGCCTAGGTA  1110