BAC Information

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BAC

Clone NameB6Ng01-133D15
Chromosome9 (Build37)
Map Location 58,926,871 - 59,046,650
singlet/doubletdoublet
Overlap geneEG665330
Upstream gene4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186
Downstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133D15.bB6Ng01-133D15.g
ACCDH933826DH933827
length1,0731,176
definitionDH933826|Mus musculus domesticus DNA, BAC clone: B6Ng01-133D15, 5' end.DH933827|Mus musculus domesticus DNA, BAC clone: B6Ng01-133D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,045,567 - 59,046,650)(58,926,871 - 58,928,059)
sequence
gaattctcctcataccctctctaagagttctgcttctttctacagagcac
tccctgacgcattacttgctcaagaaccccacccacccacgtctctggtt
tcttttttaagtgagggagaagagaaatgaattgtgggagtaacgttggt
gctctaagcagcattccagctgggctcatgtgttccacgtgtcctgggtg
gcctgaactatgaattgatggatcctgcaggagtacaggaaacagagaca
ccagggatatggagctctactgcctgggcagaagtttctttcttccactg
atttagcactgatccaaggaccattaattactgtgacagtgctgggctgg
acagcaaccttgcttacccctttcgatttgtgccctaacctaatggagtt
ggatctggcagatgctgaggctccaggagcaggctgagaaggggagggga
cagggcaggggctgagcagcttattttcttcccaggaggcaggggaatcc
agggtttgaagggagaaacacccatgttcagccgccaccacagaagacag
tctgaaaggagacagtatggatcccaaaccctgctagacttgcctgcttt
taaaatgggggagacactgggggaagcatccagatggaaaagagctaatt
taaataatcatgctctttttatggtttttggtggttgttctttccccatg
aaatgataccaaaggaaaatttcaacctggagcacgagtcacaggtttgg
gactccatatggggaactgaaacgaagtcccgtgggactctgggccagga
tctagtttcctcctacttgaagctgcaggtctcttgtgagttcactcaaa
cacttttctagatggacttcctttcctagggtctccggttggtgtatatg
accagaggggactcccttaagggaaggcgacagatctgtcctcaagggaa
tgtagcgaggcttagtgaagagaggacattctgaagcgctcgtccgggaa
gataagatcagctagctagttcaggaaagaatcccacatgctgcagttgg
gattctcagggagacagaagtga
gaattcagtgcagaaacatgaaggaccaactacccaggctaatagcatcc
acagtgggctggaccctgccacatcaatcattgttggtgattcaaaattg
gccaggccccaccctacaggaaaaaaaatcccaccaattcctgagcttgc
cctaaaatcagaccacataatccctccaatcccaggccaccctggaaggc
tctgcccccaaagaaaccccatataaaccctgtcttctgctaagttctct
gttgcttctcccctgagcagaggcagccacccttctggggggttttcctc
ccaataaaatgtgccgtgtgaggtttgttgtgccgtgtgactttgtggta
ttccttggctcccaggtttcctttcccacctgagctggaacacttgaagt
cattagtgaagaaaatgcctcaggcccacaggccaatctgatggagtcat
tttctcacgtaaagttccctcttcccagatagatgactctagcttgtgtc
aagttgacaaaacaaaacagaacaacaacaaacaattcaaaccaccacca
cccccaaaataaaacaaaaccaaacaaacaaaattaaactaaccatcaca
atgtcttttatgagaggaattactttattgaatctattttatgtcaggtg
ttttatttttggttttgttttttttggtcagttgtgttttctacctgtaa
ttttcccctatattttatcctatatcctgtgttatactaaagtaatgatt
tttttaaaccaaggttttatttgcttgaactctctctttgataatttaga
attcagaagcatcacgtttgatcatttctagtagtgtctttagggttcga
atccacctctcttttccaattgcggggagcacacacctaaaggttcccgt
gtttattggtcttgatagataaagtaaatagctccagactaagtcttcca
taggcaagtgtgtagactcagtcctgggatgcggctgggagaggaaccca
gagctgaccctgttgttttctgtctgggagagccagaactcatccagcaa
tgtgtagtctgtctaatgcgagctcgaccaagatggcatggccagttgca
attttctttaagaacaatgtcatgcaagccacattgtttcccacagtcca
cggtacttcccatcacaaggactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59045567_59046650
seq2: B6Ng01-133D15.b_50_1122 (reverse)

seq1  TCACTTTCTGTCTCCCTTGAGAATCCCAACTTGCAGGCATGTGGGATTCT  50
      |||| ||||||||||| ||||||||||||| |||| ||||||||||||||
seq2  TCAC-TTCTGTCTCCC-TGAGAATCCCAAC-TGCA-GCATGTGGGATTCT  46

seq1  CTCCTGAACTAGCTTAGCCTGGATTCTTATCTTCCCGGACGGGCGCTTTC  100
       |||||||||||| ||| |||   ||||||||||||||||| |||| |||
seq2  TTCCTGAACTAGC-TAG-CTG--ATCTTATCTTCCCGGACGAGCGC-TTC  91

seq1  AGAATGTCCTCTCTTCACTTAGCCTCGCCTACATTCCCCTTGAGGACAGA  150
      ||||||||||||||||||| ||||||| ||||||| ||||||||||||||
seq2  AGAATGTCCTCTCTTCACTAAGCCTCG-CTACATT-CCCTTGAGGACAGA  139

seq1  TCTGTCGCCTTCCCCTGAGGGAGTCCCCTCTGGTCATATACACCAACCGG  200
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  TCTGTCGCCTTCCCTTAAGGGAGTCCCCTCTGGTCATATACACCAACCGG  189

seq1  AGACCCTAGGAAAGGAAGTCCATCTAGAAAAGTGTTTGAGTGAACTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAGGAAAGGAAGTCCATCTAGAAAAGTGTTTGAGTGAACTCACA  239

seq1  GGAGACCTGCAGCTTCAAGTAGGAGGAAACTAGATCCTGGCCCAGAGTCC  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTGCAGCTTCAAGTAGGAGGAAACTAGATCCTGGCCCAGAGTCC  289

seq1  CACGGGACTTCGTTTCAGTTCCCCATATGGAGTCCCAAACCTGTGACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGACTTCGTTTCAGTTCCCCATATGGAGTCCCAAACCTGTGACTCG  339

seq1  TGCTCCAGGTTGAAATTTTCCTTTGGTATCATTTCATGGGGAAAGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGTTGAAATTTTCCTTTGGTATCATTTCATGGGGAAAGAACAA  389

seq1  CCACCAAAAACCATAAAAAGAGCATGATTATTTAAATTAGCTCTTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAAAACCATAAAAAGAGCATGATTATTTAAATTAGCTCTTTTCCA  439

seq1  TCTGGATGCTTCCCCCAGTGTCTCCCCCATTTTAAAAGCAGGCAAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGCTTCCCCCAGTGTCTCCCCCATTTTAAAAGCAGGCAAGTCTA  489

seq1  GCAGGGTTTGGGATCCATACTGTCTCCTTTCAGACTGTCTTCTGTGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTTGGGATCCATACTGTCTCCTTTCAGACTGTCTTCTGTGGTGG  539

seq1  CGGCTGAACATGGGTGTTTCTCCCTTCAAACCCTGGATTCCCCTGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGAACATGGGTGTTTCTCCCTTCAAACCCTGGATTCCCCTGCCTCC  589

seq1  TGGGAAGAAAATAAGCTGCTCAGCCCCTGCCCTGTCCCCTCCCCTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAAAATAAGCTGCTCAGCCCCTGCCCTGTCCCCTCCCCTTCTCA  639

seq1  GCCTGCTCCTGGAGCCTCAGCATCTGCCAGATCCAACTCCATTAGGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCCTGGAGCCTCAGCATCTGCCAGATCCAACTCCATTAGGTTAG  689

seq1  GGCACAAATCGAAAGGGGTAAGCAAGGTTGCTGTCCAGCCCAGCACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAATCGAAAGGGGTAAGCAAGGTTGCTGTCCAGCCCAGCACTGTC  739

seq1  ACAGTAATTAATGGTCCTTGGATCAGTGCTAAATCAGTGGAAGAAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATTAATGGTCCTTGGATCAGTGCTAAATCAGTGGAAGAAAGAAA  789

seq1  CTTCTGCCCAGGCAGTAGAGCTCCATATCCCTGGTGTCTCTGTTTCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCCAGGCAGTAGAGCTCCATATCCCTGGTGTCTCTGTTTCCTGT  839

seq1  ACTCCTGCAGGATCCATCAATTCATAGTTCAGGCCACCCAGGACACGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCAGGATCCATCAATTCATAGTTCAGGCCACCCAGGACACGTGG  889

seq1  AACACATGAGCCCAGCTGGAATGCTGCTTAGAGCACCAACGTTACTCCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGAGCCCAGCTGGAATGCTGCTTAGAGCACCAACGTTACTCCCA  939

seq1  CAATTCATTTCTCTTCTCCCTCACTTAAAAAAGAAACCAGAGACGTGGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATTTCTCTTCTCCCTCACTTAAAAAAGAAACCAGAGACGTGGGT  989

seq1  GGGTGGGGTTCTTGAGCAAGTAATGCGTCAGGGAGTGCTCTGTAGAAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGTTCTTGAGCAAGTAATGCGTCAGGGAGTGCTCTGTAGAAAGA  1039

seq1  AGCAGAACTCTTAGAGAGGGTATGAGGAGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  AGCAGAACTCTTAGAGAGGGTATGAGGAGAATTC  1073

seq1: chr9_58926871_58928059
seq2: B6Ng01-133D15.g_68_1243

seq1  GAATTCAGTGCAGAAACATGAAGGACCAACTACCCAGGCTAATAGCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCAGAAACATGAAGGACCAACTACCCAGGCTAATAGCATCC  50

seq1  ACAGTGGGCTGGACCCTGCCACATCAATCATTGTTGGTGATTCAAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGCTGGACCCTGCCACATCAATCATTGTTGGTGATTCAAAATTG  100

seq1  GCCAGGCCCCACCCTACAGGAAAAAAAATCCCACCAATTCCTGAGCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCCCACCCTACAGGAAAAAAAATCCCACCAATTCCTGAGCTTGC  150

seq1  CCTAAAATCAGACCACATAATCCCTCCAATCCCAGGCCACCCTGGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATCAGACCACATAATCCCTCCAATCCCAGGCCACCCTGGAAGGC  200

seq1  TCTGCCCCCAAAGAAACCCCATATAAACCCTGTCTTCTGCTAAGTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCAAAGAAACCCCATATAAACCCTGTCTTCTGCTAAGTTCTCT  250

seq1  GTTGCTTCTCCCCTGAGCAGAGGCAGCCACCCTTCTGGGGGGTTTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCTCCCCTGAGCAGAGGCAGCCACCCTTCTGGGGGGTTTTCCTC  300

seq1  CCAATAAAATGTGCCGTGTGAGGTTTGTTGTGCCGTGTGACTTTGTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAATGTGCCGTGTGAGGTTTGTTGTGCCGTGTGACTTTGTGGTA  350

seq1  TTCCTTGGCTCCCAGGTTTCCTTTCCCACCTGAGCTGGAACACTTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGCTCCCAGGTTTCCTTTCCCACCTGAGCTGGAACACTTGAAGT  400

seq1  CATTAGTGAAGAAAATGCCTCAGGCCCACAGGCCAATCTGATGGAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTGAAGAAAATGCCTCAGGCCCACAGGCCAATCTGATGGAGTCAT  450

seq1  TTTCTCACGTAAAGTTCCCTCTTCCCAGATAGATGACTCTAGCTTGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACGTAAAGTTCCCTCTTCCCAGATAGATGACTCTAGCTTGTGTC  500

seq1  AAGTTGACAAAACAAAACAGAACAACAACAAACAATTCAAACCACCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACAAAACAAAACAGAACAACAACAAACAATTCAAACCACCACCA  550

seq1  CCCCCAAAATAAAACAAAACCAAACAAACAAAATTAAACTAACCATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAATAAAACAAAACCAAACAAACAAAATTAAACTAACCATCACA  600

seq1  ATGTCTTTTATGAGAGGAATTACTTTATTGAATCTATTTTATGTCAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTTATGAGAGGAATTACTTTATTGAATCTATTTTATGTCAGGTG  650

seq1  TTTTATTTTTGGTTTTGTTTTTTTTGGTCAGTTGTGTTTTCTACCTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTGGTTTTGTTTTTTTTGGTCAGTTGTGTTTTCTACCTGTAA  700

seq1  TTTTCCCCTATATTTTATCCTATATCCTGTGTTATACTAAAGTAATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTATATTTTATCCTATATCCTGTGTTATACTAAAGTAATGATT  750

seq1  TTTTTAAACCAAGGTTTTATTTGCTTGAACTCTCTCTTTGATAATTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACCAAGGTTTTATTTGCTTGAACTCTCTCTTTGATAATTTAGA  800

seq1  ATTCAGAAGCATCACGTTTGATCA-TTCTAGTAGTGTCTTTAGGGTTCGA  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTCAGAAGCATCACGTTTGATCATTTCTAGTAGTGTCTTTAGGGTTCGA  850

seq1  ATCCACCTCTCTTTTCCAATTGC-GGGAGCACACACCT-AAGGTTCCCGT  897
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  ATCCACCTCTCTTTTCCAATTGCGGGGAGCACACACCTAAAGGTTCCCGT  900

seq1  GTTTATTTGGTCTTTGATAGAT-AAGTAAATAGCTCCAGACTAAGTCTTC  946
      ||||| |||||| ||||||||| |||||||||||||||||||||||||| 
seq2  GTTTA-TTGGTC-TTGATAGATAAAGTAAATAGCTCCAGACTAAGTCTT-  947

seq1  CCATAGGCAAGGTGTGTAGACTCAGTCCTGGGATGCGGCTGGGAGAGGAA  996
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGCAA-GTGTGTAGACTCAGTCCTGGGATGCGGCTGGGAGAGGAA  996

seq1  CCCAGAGCTGACACCTGTTGTTTTCTGTCTGGGAGAGCCAGAGACTCGAT  1046
      |||||||||||| ||||||||||||||||||||||||||||| |||| ||
seq2  CCCAGAGCTGAC-CCTGTTGTTTTCTGTCTGGGAGAGCCAGA-ACTC-AT  1043

seq1  CCAAGCAATGTGTAGTCTGTTCTAATGCGGAGCTCGACACAAGATGGTCA  1096
      || |||||||||||||||| |||||||| ||||||||| |||||||| ||
seq2  CC-AGCAATGTGTAGTCTG-TCTAATGC-GAGCTCGAC-CAAGATGG-CA  1088

seq1  TGGCCAGTTGGCAATTTTTCTTTAG-ACAATGTCATGCCAAGCCACATCT  1145
      ||||||||| ||||||||  || || ||||||||||| ||||||||||  
seq2  TGGCCAGTT-GCAATTTTCTTTAAGAACAATGTCATG-CAAGCCACATTG  1136

seq1  TTTCACCACAGTCCACGGTAACTTCCCCATCACAAAGGACTGAA  1189
      |||| |||||||||||||| |||| |||||||| ||||||||||
seq2  TTTC-CCACAGTCCACGGT-ACTT-CCCATCAC-AAGGACTGAA  1176