BAC Information

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BAC

Clone NameB6Ng01-133P09
Chromosome9 (Build37)Y (Build37)
Map Location 92,327,269 - 92,327,7271,120,576 - 1,120,973
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133P09.bB6Ng01-133P09.g
ACCDH934377DH934378
length453985
definitionDH934377|Mus musculus domesticus DNA, BAC clone: B6Ng01-133P09, 5' end.DH934378|Mus musculus domesticus DNA, BAC clone: B6Ng01-133P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,327,269 - 92,327,727)(1,120,576 - 1,120,973)
sequence
actgccctccaacccctgaatggggcttgggcagtgatataggctgtagc
gctgtggatttgaagctgactgggtttgaggggcctacagagaagatcag
agaggcatctatgcccgagagagcctttctgtgtttgcttctctatattc
tttgctccccaccctaactcccccacctccaaacaagctccccccatgaa
taaagaattgggagacaaaggtacaaagggctccagaccaggtaattcat
tgatataaagagagaaatatagccttttgatacttaaagctggtatgaag
atacattgctctaataagtcttacaggagactcatattctgtctaacatg
ggctccacaggaattgtgggtttaaatactgatttgaaaagctgcctctt
ataagcagatatagacaggaaagggaaaggggaaagggaaaggggaaagg
gga
gaattcttttagtatttgttgtaatggttcctgttcatttctgattctgt
caatttggtcatctctttcttttttgttggttaggcccaatgtctgtgaa
tattgtttttttttttttctttccattttttattaggtatttagctcatt
tacatttccaatgctataccaaaagtcccccatacccacccaccccactc
ccctacccgcccactccccctttttggccctggcgttcccctgtactggg
gcatataaagtttgcgtgtccaatgggcctctctttccagtgatggccga
ctaggccatcttttgatacatatgcagctagagtcaagagctccggggta
ctggttagttcataatgttgatccacctatagggttgcagatccctttag
ctccttgggtactttctctagctcctccattgggagccctgtgatccatc
cattagctgactgtgagcatccacttctgtgtttgctaggccccggcata
gtctcacaagagacatctacttctgggtcctttcgataaaatcttgctag
tgtatgcaatggtgtcagcgtttggatgctgattatggggtggatccctg
gctatggcagtctctacatggtccatccgttcatctcagctccaactttg
tctctgtaactccttccaagggtgttttgttcccacttctaaggaggggc
atagtgtccacactttcagtcttcatttttcttgagtttcatgtgtttag
gaaattgtatcttatatcttgggtatcctaggttttgaatattgttttac
tttttgaagaaacagctcttatactcattgattttatgtattagtttctt
tgtttctatttcattatttcctactctgattttaggatctctctcttttt
tattactgggaattgggttaatttttttcatggttttcaaattctgtctt
gtatctcagtcatttcttgtatcattttgcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92327269_92327727
seq2: B6Ng01-133P09.b_48_506 (reverse)

seq1  TCCCCTTTCCCCTTTCCCTTTCCCCTTTCCCTTTCCTGTCTATATCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTCCCCTTTCCCTTTCCCCTTTCCCTTTCCTGTCTATATCTGCT  50

seq1  TATAAGAGGCAGCTTTTCAAATCAGTATTTAAACCCACAATTCCTGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGGCAGCTTTTCAAATCAGTATTTAAACCCACAATTCCTGTGGA  100

seq1  GCCCATGTTAGACAGAATATGAGTCTCCTGTAAGACTTATTAGAGCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTTAGACAGAATATGAGTCTCCTGTAAGACTTATTAGAGCAATG  150

seq1  TATCTTCATACCAGCTTTAAGTATCAAAAGGCTATATTTCTCTCTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCATACCAGCTTTAAGTATCAAAAGGCTATATTTCTCTCTTTATA  200

seq1  TCAATGAATTACCTGGTCTGGAGCCCTTTGTACCTTTGTCTCCCAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAATTACCTGGTCTGGAGCCCTTTGTACCTTTGTCTCCCAATTCT  250

seq1  TTATTCATGGGGGGAGCTTGTTTGGAGGTGGGGGAGTTAGGGTGGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATGGGGGGAGCTTGTTTGGAGGTGGGGGAGTTAGGGTGGGGAGC  300

seq1  AAAGAATATAGAGAAGCAAACACAGAAAGGCTCTCTCGGGCATAGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATAGAGAAGCAAACACAGAAAGGCTCTCTCGGGCATAGATGCC  350

seq1  TCTCTGATCTTCTCTGTAGGCCCCTCAAACCCAGTCAGCTTCAAATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATCTTCTCTGTAGGCCCCTCAAACCCAGTCAGCTTCAAATCCAC  400

seq1  AGCGCTACAGCCTATATCACTGCCCAAGCCCCATTCAGGGGTTGGAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTACAGCCTATATCACTGCCCAAGCCCCATTCAGGGGTTGGAGGGC  450

seq1  AGTGAATTC  459
      |||||||||
seq2  AGTGAATTC  459

seq1: chrY_1120576_1120973
seq2: B6Ng01-133P09.g_173_567

seq1  TTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTAC  50
      ||||||||  ||||| |||||||||||||||||||||||| |||||||||
seq2  TTTTTTTT--TTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTAC  48

seq1  ATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCC  100
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  ATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCA-CCCCACTCCC  97

seq1  CTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGC  150
      || ||| ||||||||||||||||||||||||  |||||||||||||||||
seq2  CTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGC  147

seq1  ATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACT  200
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACT  197

seq1  AGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  247

seq1  GGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCT  300
      |||||| |||||| |||| |||||||||||||||| ||||||||||||||
seq2  GGTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGATCCCTTTAGCT  297

seq1  CCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCA  350
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCA  347

seq1  TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATA  398
      ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATA  395