BAC Information

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BAC

Clone NameB6Ng01-134C17
Chromosome9 (Build37)
Map Location 123,054,348 - 123,224,676
singlet/doubletdoublet
Overlap geneClec3b, Cdcp1, Tmem158, Scp2-ps2
Upstream geneSnrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7
Downstream geneLars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134C17.bB6Ng01-134C17.g
ACCDH934534DH934535
length1,023947
definitionDH934534|Mus musculus domesticus DNA, BAC clone: B6Ng01-134C17, 5' end.DH934535|Mus musculus domesticus DNA, BAC clone: B6Ng01-134C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,054,348 - 123,055,381)(123,224,123 - 123,224,676)
sequence
gaattccatctttatgggactttgatttgcagtcattctccagtgctttc
atttgccacaatgctggcagggatccgaaggaatactcttcttgtctcct
gagagatttttacaatcttttcttaggtgccccggttttttttataaccg
aaacatgtaattccataagtagcaccgaatttcttccctttccttgctgc
ggcgtaagctatcccctgaattatggccggtgaggtatctgcacatgctt
taatataatcttgtagggaacttgtcttatggattggtctgtttaggtct
tggcacaaggtattcacgttttcccaagccaattgttttattaatacaac
agtctcttttgagggaggaagcatcttacctactcgcttccaatcctcta
atgtcaagcttccctcctctggaaaccagggactgactttttgtccgaaa
tcataaaattcttgtaaagatttatctgagacctttaggcctttttcata
caacatgtacttgaagaccgacagaaacaacctcttccctttcgattctg
attgccccatgataaaaacttactcgtccttgaactgatctacgaatcag
cccgtctgcagcatggtcacgacgagatcctgtctttgcctgagaaaata
aagaagaaaaagaaaaaagaaagaagaactaaagactaacccgctctggt
gtccctgttcgggcaccagctgccgcagaccctctgggtccctgtgtctg
cgtggaatggggtctctcgacgcgggtgggcaaagtgtgggtgagtgaca
aacagacacacacaggagagttcgtgtggaatctgagtgtaattttaaaa
tcgagcatcagactttttatgcagaggacaataaggaagtaggtgacata
tttgtaagtacaattgaggtaaccggaatctacataaacagaggatgcaa
cacaaaagtctaacgggaaccacctgggatagattcatgataacagctgg
gatcacaaggctccccctaagat
gaattcaagcaggtcaggaagcaggagctgatgcagaggccatggaggga
tgttctttattggcttgcttcccctggcttgctcagcctgctctcttata
gaaccaagactaccagcccagagatgtcaccacccacaaggggacctccc
cacttgatcactaattgagaaaatgccttatagctgaatcttgtagaggc
atttccccaactgaagctcctttctctgtgataactccagcctgtgtcaa
gctgacacaaaactagccagtacaacccccattttcatcccttttggaat
gggattgtttactctgtgccattgtatacaagatgtagataacttgtgtt
tgttttgttttacaaaggctcacagctaagcatttgttttgagcctcaga
agaatccctggaccttggaacaatgttagaactgtaagtgcaggcacttt
tgaggttggactgaaagtatttgcattatcagatgctcgtgagtttatgg
ggccaggagtgcattgttgtggtttagatgtgaaatgttcccacagactc
taggtttccagcttgtggtaatgattgaggaggttatagaacctttatga
ggtggacttagctgaaggaaatgggccattagagtggtggtgacagagga
gtgagattttatagctttaccttatattctgttttttttttttttttttt
tatccatccagaggtgagcaagctcctgctgccatagctgtgagcctatc
ctgcgccatactttccttgtctgatagacagtattcactctctcaaacta
tgagccaaaatggaactatttctgcttaaaaaacaatgatgatgacgacg
acatgacaatgacaattctcagcaggatacaatcacataagactatgcac
agacctgccaaggtctaggtaagaatagggactctaagacattgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_123054348_123055381
seq2: B6Ng01-134C17.b_48_1070

seq1  GAATTCCATCTTTATGGGACTTTGATTTGCAGTCATTCTCCAGTGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTTATGGGACTTTGATTTGCAGTCATTCTCCAGTGCTTTC  50

seq1  ATTTGCCACAATGCTGGCAGGGATCCGAAGGAATACTCTTCTTGTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCACAATGCTGGCAGGGATCCGAAGGAATACTCTTCTTGTCTCCT  100

seq1  GAGAGATTTTTACAATCTTTTCTTAGGTGCCCCGGTTTTTTTTATAACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTTTACAATCTTTTCTTAGGTGCCCCGGTTTTTTTTATAACCG  150

seq1  AAACATGTAATTCCATAAGTAGCACCGAATTTCTTCCCTTTCCTTGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTAATTCCATAAGTAGCACCGAATTTCTTCCCTTTCCTTGCTGC  200

seq1  GGCGTAAGCTATCCCCTGAATTATGGCCGGTGAGGTATCTGCACATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTAAGCTATCCCCTGAATTATGGCCGGTGAGGTATCTGCACATGCTT  250

seq1  TAATATAATCTTGTAGGGAACTTGTCTTATGGATTGGTCTGTTTAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATCTTGTAGGGAACTTGTCTTATGGATTGGTCTGTTTAGGTCT  300

seq1  TGGCACAAGGTATTCACGTTTTCCCAAGCCAATTGTTTTATTAATACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAGGTATTCACGTTTTCCCAAGCCAATTGTTTTATTAATACAAC  350

seq1  AGTCTCTTTTGAGGGAGGAAGCATCTTACCTACTCGCTTCCAATCCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTTTGAGGGAGGAAGCATCTTACCTACTCGCTTCCAATCCTCTA  400

seq1  ATGTCAAGCTTCCCTCCTCTGGAAACCAGGGACTGACTTTTTGTCCGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAGCTTCCCTCCTCTGGAAACCAGGGACTGACTTTTTGTCCGAAA  450

seq1  TCATAAAATTCTTGTAAAGATTTATCTGAGACCTTTAGGCCTTTTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATTCTTGTAAAGATTTATCTGAGACCTTTAGGCCTTTTTCATA  500

seq1  CAACATGTACTTGAAGACCGACAGAAACAACCTCTTCCCTTTCGATTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTACTTGAAGACCGACAGAAACAACCTCTTCCCTTTCGATTCTG  550

seq1  ATTGCCCCATGATAAAAACTTACTCGTCCTTGAACTGATCTACGAATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCCATGATAAAAACTTACTCGTCCTTGAACTGATCTACGAATCAG  600

seq1  CCCGTCTGCAGCATGGTCACGACGAGATCCTGTCTTTGCCTGAGAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCTGCAGCATGGTCACGACGAGATCCTGTCTTTGCCTGAGAAAATA  650

seq1  AAGAAGAAAAAGAAAAAAGAAAGAAGAACTAAAGACTAACCCGCTCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAAGAAAAAAGAAAGAAGAACTAAAGACTAACCCGCTCTGGT  700

seq1  GTCCCTGTTCGGGCACCAGCTGCCGCAGACCCTCTGGGTCCCTGTGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTTCGGGCACCAGCTGCCGCAGACCCTCTGGGTCCCTGTGTCTG  750

seq1  CGTGGAATGGGGTCTCTCGACGCGGGTGGGCAAAGTGTGGGTGAGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAATGGGGTCTCTCGACGCGGGTGGGCAAAGTGTGGGTGAGTGACA  800

seq1  AACAGACACACACAGGAGAGTTCGTGTGGAATCTGAGTGTAATTTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACACACACAGGAGAGTTCGTGTGGAATCTGAGTGTAATTTTAAAA  850

seq1  TCGAGCATCAGACTTTTTATGCAGAGGACAATAAGGAAGTTAGGTGACAT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCGAGCATCAGACTTTTTATGCAGAGGACAATAAGGAAG-TAGGTGACAT  899

seq1  ATTTGTAAGGTACAATTGAGGTAACCGGAATCTTACATAAAACAGAGGAA  950
      |||||||| ||||||||||||||||||||||| ||||| ||||||||| |
seq2  ATTTGTAA-GTACAATTGAGGTAACCGGAATC-TACAT-AAACAGAGG-A  945

seq1  TGCAAACACAAAAGGTCTAACGGGAACCACCTGGGATAGAATTCATTGAT  1000
      ||| ||||||||| ||||||||||||||||||||||||| ||||| ||||
seq2  TGC-AACACAAAA-GTCTAACGGGAACCACCTGGGATAG-ATTCA-TGAT  991

seq1  AACAGCTGGGATCAACAAGGGCTCCACCTAAGAT  1034
      ||||||||||||| |||| |||||| ||||||||
seq2  AACAGCTGGGATC-ACAA-GGCTCCCCCTAAGAT  1023

seq1: chr9_123224123_123224676
seq2: B6Ng01-134C17.g_463_1014 (reverse)

seq1  AGTCAATGTCCTTAGAGTCCCTATTCTTACCTAGACCTTGGCAGGTCTGT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGT-CTTAGAGTCCCTATTCTTACCTAGACCTTGGCAGGTCTGT  49

seq1  GCATAGTCTTATGTGATTTGTATCCTGCTGAGAATTGTCATTGTCATGTC  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCATAGTCTTATGTGA-TTGTATCCTGCTGAGAATTGTCATTGTCATGTC  98

seq1  GTCGTCATCATCATTGTTATTTTAAGCAGAAATAGTT-CATTTTGGCTCA  149
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GTCGTCATCATCATTGTT-TTTTAAGCAGAAATAGTTCCATTTTGGCTCA  147

seq1  TAGTTTGAGAGAGTGAATACTGTCTATCAGACAAGGAAAGTATGGCGCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAGAGAGTGAATACTGTCTATCAGACAAGGAAAGTATGGCGCAG  197

seq1  GATAGGCTCACAGCTATGGCAGCAGGAGCTTGCTCACCTCTGGATGGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCTCACAGCTATGGCAGCAGGAGCTTGCTCACCTCTGGATGGATA  247

seq1  AAAAAAAAAAAAAAAAAAACAGAATATAAGGTAAAGCTATAAAATCTCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAACAGAATATAAGGTAAAGCTATAAAATCTCAC  297

seq1  TCCTCTGTCACCACCACTCTAATGGCCCATTTCCTTCAGCTAAGTCCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTCACCACCACTCTAATGGCCCATTTCCTTCAGCTAAGTCCACC  347

seq1  TCATAAAGGTTCTATAACCTCCTCAATCATTACCACAAGCTGGAAACCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGGTTCTATAACCTCCTCAATCATTACCACAAGCTGGAAACCTA  397

seq1  GAGTCTGTGGGAACATTTCACATCTAAACCACAACAATGCACTCCTGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGTGGGAACATTTCACATCTAAACCACAACAATGCACTCCTGGCC  447

seq1  CCATAAACTCACGAGCATCTGATAATGCAAATACTTTCAGTCCAACCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACTCACGAGCATCTGATAATGCAAATACTTTCAGTCCAACCTCA  497

seq1  AAAGTGCCTGCACTTACAGTTCTAACATTGTTCCAAGGTCCAGGGATTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCTGCACTTACAGTTCTAACATTGTTCCAAGGTCCAGGGATTCT  547

seq1  TCTGA  554
      |||||
seq2  TCTGA  552