BAC Information

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BAC

Clone NameB6Ng01-134D13
Chromosome9 (Build37)
Map Location 83,677,124 - 83,677,547
singlet/doubletsinglet
Overlap geneElovl4
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222
Downstream geneTtk, EG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134D13.bB6Ng01-134D13.g
ACCDH934574DH934575
length726121
definitionDH934574|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D13, 5' end.DH934575|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgataagtggatattagcccagaaaaatagaacacccaagat
acaatttgcaaaacacaagaaaatcaagaaaagggaagacaaatgggtgg
atacattgttcctccttataatagggaacaaaatacccatgaaaggagtt
acagagacaatttggagctaagagaaaatgatggactatcaagagactac
cccacctgggaatccataccataatcagccaccaaacccagacactattg
catatggcagcaagattttgatgaagggaccctggtatagctgtctggta
tgaggctatgccaatcctggcaaatacagaagtggatgctcacagtcatc
tattggatggacatcccccaatggaggaggtagagaaagtactcaaggag
ctgacggggtctgcaaccctgtaggtggaacaacaatatgaaccagtaac
cccagagcttgggtctctagctgcatatgtagcagaagatggcctagtcg
gccatcactgtgaagagaggcccttggtattgcaaactttatatgcctca
gtacaggggaatgccagggccaagaattgggagtgggtgggtaggggagc
agagcaggggggagggtatagagaactttcgggatagcatttgaaatttg
aaatgtatataaagaaaaggtctaataaaaaaaaaagagatgacaaaaaa
aattactcataccatcatgaaaagaa
aaaaggctcaacaagctgaagggcccaagtgagggcaccttggtcccact
tgggagagagaagaaagcaatcataagtggggagggagggagagacttgg
gaaggaaagtggatagggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_83677124_83677547
seq2: B6Ng01-134D13.b_327_750 (reverse)

seq1  --TTTTTTTTAA--TTTGTTTTTTTTATTAGATATTTTCTTTATATAC--  44
        |||||| | |  | | ||||||||||||||  ||||||||||||||  
seq2  TTTTTTTTGTCATCTCTTTTTTTTTTATTAGACCTTTTCTTTATATACAT  50

seq1  -----ATTTCAAATGCTATCCTGAAAGTTCCCTATACCCTTCCCCC-ACC  88
           |||||||||||||||| |||||||| ||||||||| |||||  | 
seq2  TTCAAATTTCAAATGCTATCCCGAAAGTTCTCTATACCCTCCCCCCTGCT  100

seq1  CTGTTCCCCTACCCACTCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGT  138
      ||| |||||||||||| |||||||| |||||||||||||| |||||||||
seq2  CTGCTCCCCTACCCACCCACTCCCAATTCTTGGCCCTGGCATTCCCCTGT  150

seq1  ACTGGGGCATATAAAGTTTGCACGACCAAGGGGCCTCTCTTCCCAGTGAT  188
      |||| |||||||||||||||||  ||||| |||||||||||| |||||||
seq2  ACTGAGGCATATAAAGTTTGCAATACCAA-GGGCCTCTCTTCACAGTGAT  199

seq1  GGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACAAACTCT  238
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  GGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACCCAAGCTCT  249

seq1  GGGGAGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGAT  288
      ||||  |||||    |||||||||||||||||||||| ||||||||||| 
seq2  GGGG-TTACTG----GTTCATATTGTTGTTCCACCTACAGGGTTGCAGAC  294

seq1  CCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGGGCCCTGT  338
      ||| ||||||||||| || ||||||||| || ||||||||||||     |
seq2  CCCGTCAGCTCCTTGAGTACTTTCTCTACCTCCTCCATTGGGGG----AT  340

seq1  GTTCCATCTTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCA  388
      | ||||||  |||||||||||||||||||||||||||||||||||||| |
seq2  G-TCCATCCAATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGG-A  388

seq1  CTGGCATAGCCTCATACGAGACAGCTATACCAGGGT  424
       |||||||||||||||| ||||||||||||||||||
seq2  TTGGCATAGCCTCATACCAGACAGCTATACCAGGGT  424