BAC Information

Click to search

BAC

Clone NameB6Ng01-134J12
Chromosome9 (Build37)
Map Location 35,608,776 - 35,700,983
singlet/doubletdoublet
Overlap gene9230110F15Rik, LOC100041605
Upstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik
Downstream gene9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J12.bB6Ng01-134J12.g
ACCDH934852DH934853
length1,112428
definitionDH934852|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J12, 5' end.DH934853|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,699,859 - 35,700,983)(35,608,776 - 35,609,208)
sequence
gaattcagcttgtcctgaagttcagcccagattgcaaaggctgactagaa
gaaattgttcttagtttcctacccactcaaactcacaaaccatatgaaag
ccatgtgggcagctgaactgtttcagacaactcctacagctatccacaac
tgtcaggttcttcctcttcccgtgacagagtgtcactcttaggcctttgt
ctgctgttgtctctagagttataacttctcaaatggacctctgactaaag
catctgagaccaactccctttttgggacaaggtctcaatatacagtactg
ctaacctgggactcactatatacagcaggttagctatgatatcacagaga
tatgcactcctctgccacctaagtgctaggatttgcactgtaccttgccc
ttcccaggtctaatccctatgaatggtagatagttcttgagaatctaaaa
tttcaagcattctgtaatcctaatctcttgcttctttgtgctttggcaaa
ggaaagtaaggttgacatagccctggggtcactttgtcaagaaacaatgt
aatggatcctataaaatgatgctgtgtggcagtgggttttttgttttgtt
ttgttttgttttgtgtttgtgtttgttttaggatcctatgatagaaatcc
gtggaaatgaaaaattcacatggttatttttatggatattttatataatt
acctcgattaagagaagcattaagaagtcatactgtggatcactctccat
gcctcttctttagcctgaatgtccatactgctatgggaagactctgaaga
atactttctgtaactacaggtaccacaaaagaggtagaattgttcatgat
tcctccatgtaagtggctgcaaacagatgaagagcttggaatgcaggagg
tcatgtgttagacagccagtgagagtagacttaggcaaagctctcatttg
gcacactaagatcttgctttctcattccaggcaagactgggtcatggaga
tcaaaaagaatcatcagaactctacataaaagtcttttgtgagagttatt
ctgtgtttttgtatttcccaaatatctgagttttgagtcagtagctgaag
aaattaatgcca
aaaccaggggctacctggcttgggctaagcaatatccaatgccacggaaa
gctaagaaggaaatcactcaccatattagaagtctcagagacacacctaa
ccctcgaaagacttgaggctccagggtgtgggaaggtctgttggtttggg
ggtaggagggtggggacatactcttggagacagcaggaggaggaatgaaa
tgagaaacaagtagagggcatacaagaggggggatgatggctagactgca
aataataataataataataataataatgatgatgatgatgatgatgataa
taagatatctcacagacttatggattcatattctctgccaatacccatgg
aaaatcattctccttttagttaataagctcctcttttttgatgataggcc
cctccaggacctttcaagttgtcaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_35699859_35700983
seq2: B6Ng01-134J12.b_50_1161 (reverse)

seq1  TGGCA-TAATATCTTCAGCTACTGACTCCACAAACTCAGATATTTGGGAA  49
      ||||| |||| |||||||||||||||||   |||||||||||||||||||
seq2  TGGCATTAATTTCTTCAGCTACTGACTC--AAAACTCAGATATTTGGGAA  48

seq1  ATACAAAACACCAAGAATTAACTTCCTCAC-AAAGACTTTTATGTAGAGT  98
      |||||||| ||  |||| |||||  ||||| |||||||||||||||||||
seq2  ATACAAAA-ACACAGAA-TAACT--CTCACAAAAGACTTTTATGTAGAGT  94

seq1  TCTTGGATGATTCTTTTTGATCTTCCATGACCCAGTCTTTGCCTGGAATG  148
      |||  ||||||||||||||||| |||||||||||||| ||||||||||||
seq2  TCT--GATGATTCTTTTTGATC-TCCATGACCCAGTC-TTGCCTGGAATG  140

seq1  AGAAAGCAAGATCTTAGTGTGCCAAAATGAGAGGCTTTGCCCTAAGTCTA  198
      ||||||||||||||||||||||| |||||||| |||||| ||||||||||
seq2  AGAAAGCAAGATCTTAGTGTGCC-AAATGAGA-GCTTTG-CCTAAGTCTA  187

seq1  CTCTCACTGGCTGTCCTAACACATGACCTCCTGCATTCCAAGCTCTTCAT  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTCACTGGCTGT-CTAACACATGACCTCCTGCATTCCAAGCTCTTCAT  236

seq1  CTGTTTGCAGCCACCTTACATGGAGGAATCATGAACAATTCTACCTCTTT  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCAGCCA-CTTACATGGAGGAATCATGAACAATTCTACCTCTTT  285

seq1  TGTGGTACCTGTAGTTACAGAAAGTATTCTTCAGAGTCTTCCCATAGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACCTGTAGTTACAGAAAGTATTCTTCAGAGTCTTCCCATAGCAG  335

seq1  TATGGACATTCAGGCTAAAGAAGAGGCATGGAGAGTGATCCACAGTATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATTCAGGCTAAAGAAGAGGCATGGAGAGTGATCCACAGTATGA  385

seq1  CTTCTTAATGCTTCTCTTAATCGAGGTAATTATATAAAATATCCATAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAATGCTTCTCTTAATCGAGGTAATTATATAAAATATCCATAAAA  435

seq1  ATAACCATGTGAATTTTTCATTTCCACGGATTTCTATCATAGGATCCTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATGTGAATTTTTCATTTCCACGGATTTCTATCATAGGATCCTAA  485

seq1  AACAAACACAAACACAAAACAAAACAAAACAAAACAAAAAACCCACTGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACAAACACAAAACAAAACAAAACAAAACAAAAAACCCACTGCC  535

seq1  ACACAGCATCATTTTATAGGATCCATTACATTGTTTCTTGACAAAGTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATCATTTTATAGGATCCATTACATTGTTTCTTGACAAAGTGAC  585

seq1  CCCAGGGCTATGTCAACCTTACTTTCCTTTGCCAAAGCACAAAGAAGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCTATGTCAACCTTACTTTCCTTTGCCAAAGCACAAAGAAGCAA  635

seq1  GAGATTAGGATTACAGAATGCTTGAAATTTTAGATTCTCAAGAACTATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGGATTACAGAATGCTTGAAATTTTAGATTCTCAAGAACTATCT  685

seq1  ACCATTCATAGGGATTAGACCTGGGAAGGGCAAGGTACAGTGCAAATCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCATAGGGATTAGACCTGGGAAGGGCAAGGTACAGTGCAAATCCT  735

seq1  AGCACTTAGGTGGCAGAGGAGTGCATATCTCTGTGATATCATAGCTAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTAGGTGGCAGAGGAGTGCATATCTCTGTGATATCATAGCTAACC  785

seq1  TGCTGTATATAGTGAGTCCCAGGTTAGCAGTACTGTATATTGAGACCTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATATAGTGAGTCCCAGGTTAGCAGTACTGTATATTGAGACCTTG  835

seq1  TCCCAAAAAGGGAGTTGGTCTCAGATGCTTTAGTCAGAGGTCCATTTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAAGGGAGTTGGTCTCAGATGCTTTAGTCAGAGGTCCATTTGAG  885

seq1  AAGTTATAACTCTAGAGACAACAGCAGACAAAGGCCTAAGAGTGACACTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATAACTCTAGAGACAACAGCAGACAAAGGCCTAAGAGTGACACTC  935

seq1  TGTCACGGGAAGAGGAAGAACCTGACAGTTGTGGATAGCTGTAGGAGTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGGGAAGAGGAAGAACCTGACAGTTGTGGATAGCTGTAGGAGTTG  985

seq1  TCTGAAACAGTTCAGCTGCCCACATGGCTTTCATATGGTTTGTGAGTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACAGTTCAGCTGCCCACATGGCTTTCATATGGTTTGTGAGTTTG  1035

seq1  AGTGGGTAGGAAACTAAGAACAATTTCTTCTAGTCAGCCTTTGCAATCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAGGAAACTAAGAACAATTTCTTCTAGTCAGCCTTTGCAATCTG  1085

seq1  GGCTGAACTTCAGGACAAGCTGAATTC  1125
      |||||||||||||||||||||||||||
seq2  GGCTGAACTTCAGGACAAGCTGAATTC  1112

seq1: chr9_35608776_35609208
seq2: B6Ng01-134J12.g_67_500

seq1  GAATTCAAACCAGGGGCTACCTGGCTTGGGCTAAGCAATATCCAATGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCAGGGGCTACCTGGCTTGGGCTAAGCAATATCCAATGCCA  50

seq1  CGGAAAGCTAAGAAGGAAATCACTCACCATATTAGAAGTCTCAGAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGCTAAGAAGGAAATCACTCACCATATTAGAAGTCTCAGAGACAC  100

seq1  ACCTAACCCTCGAAAGACTTGAGGCTCCAGGGTGTGGGAAGGTCTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCCTCGAAAGACTTGAGGCTCCAGGGTGTGGGAAGGTCTGTTGG  150

seq1  TTTGGGGGTAGGAGGGTGGGGACATACTCTTGGAGACAGCAGGAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTAGGAGGGTGGGGACATACTCTTGGAGACAGCAGGAGGAGGA  200

seq1  ATGAAATGAGAAACAAGTAGAGGGCAGACAAGAGGGGGGATGATGGCTAG  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGAAATGAGAAACAAGTAGAGGGCATACAAGAGGGGGGATGATGGCTAG  250

seq1  ACTGCAAATAATAATAATAATAATAATAATAATGATGATGATGATGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAATAATAATAATAATAATAATAATAATGATGATGATGATGATGA  300

seq1  TGATAATAAGATATCTCAGAGACTTATGGATTCATATACCCTGCCAATAC  350
      |||||||||||||||||| |||||||||||||||||| | ||||||||||
seq2  TGATAATAAGATATCTCACAGACTTATGGATTCATATTCTCTGCCAATAC  350

seq1  CCATGGAAAACCATTCTCCTGTTAGTTAAGAAGCTCCACTCCAGTGATTA  400
      |||||||||| ||||||||| |||||||| ||||||| ||    |||| |
seq2  CCATGGAAAATCATTCTCCTTTTAGTTAATAAGCTCCTCTTTTTTGATGA  400

seq1  TAGGCCCATACAGGACC-TACAAGTGGTCAATAA  433
      ||||||| | ||||||| | ||||| ||||||||
seq2  TAGGCCCCTCCAGGACCTTTCAAGTTGTCAATAA  434