BAC Information

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BAC

Clone NameB6Ng01-134L05
Chromosome9 (Build37)
Map Location 23,567,231 - 23,733,534
singlet/doubletdoublet
Overlap geneLOC100040866, LOC100040878, LOC100040893
Upstream geneBbs9, Bmper
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134L05.bB6Ng01-134L05.g
ACCDH934931DH934932
length1,15165
definitionDH934931|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L05, 5' end.DH934932|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,567,231 - 23,568,412)(23,733,470 - 23,733,534)
sequence
gaattcagagattcagcacttgaagcctgtatgtattgacatctcagtat
cacccaaagttcagatcttgtgttccccattttggattgccacacctaaa
tagtgactttctgattagttttctgaattttttcccctttgaattgttac
ttttgcattgaaaaaaaaaaaaccctcctccttgttaacattgtctgctc
actccattcttggagggaaggcaagtgaagaactacattggggaatccac
tgtcatagctattgtagcaggaatcagacttgcccataattctttgtggc
tccctgtgagtaggtaccttgaaatttggggcaccagttttacctaaaag
ctgaaggaggtagatttttctagctttaatcacaaatccactaattcaca
tttgtggtggtggtgtgaaaacaggaaacttaacttgaatagcccaccag
tgagatgcttagacaagtcacttaagttccttgagtaagaccaacttcta
ttgtgcaacttctgtggagaaatggagggtagtggtttgaatgagaacaa
ctgccataggaaggattaggaggtgtggccttgttataatgtgtgactta
gggtgggtgattgggttttaaaagccacagcatttgcactctgtcgtatc
tatctatcttttctttctatctttctttctatctatctatctatctatct
atctatctatctatctatctatcatctatctacctatctataatctcctc
tctttgtctttgccttgtagtttttgtctaaacatataaactctcagcta
tacctccagagctctgtttgcttgcctgctgctatgtttcctgctgtgac
agagatggatttactacattctggagccatgagccagttttttttttttc
ttttaaaagttgccttattcatggagtctatttacagcaatataaaagta
agacagggggtattaatgaaggttcaacaataacagggtatagtaacatg
gagttttatttatgagacttaggattacttgagactgtcagatatgaaat
tcttccttccataatataatgctgtatatgccaggccagtggtggcactt
gccttattccacacttgggaggcgaagacaggtgggatttctgagttcca
g
attcttaattcataaacattgggctctcctcctcctctacctcctcctcc
tcctcctccacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_23567231_23568412
seq2: B6Ng01-134L05.b_45_1195

seq1  GAATTCAGAGATTCAGCACTTGAAGCCTGTATGTATTGACATCTCAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATTCAGCACTTGAAGCCTGTATGTATTGACATCTCAGTAT  50

seq1  CACCCAAAGTTCAGATCTTGTGTTCCCCATTTTGGATTGCCACACCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAGTTCAGATCTTGTGTTCCCCATTTTGGATTGCCACACCTAAA  100

seq1  TAGTGACTTTCTGATTAGTTTTCTGAATTTTTTCCCCTTTGAATTGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTTTCTGATTAGTTTTCTGAATTTTTTCCCCTTTGAATTGTTAC  150

seq1  TTTTGCATTGAAAAAAAAAAAACCCTCCTCCTTGTTAACATTGTCTGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATTGAAAAAAAAAAAACCCTCCTCCTTGTTAACATTGTCTGCTC  200

seq1  ACTCCATTCTTGGAGGGAAGGCAAGTGAAGAACTACATTGGGGAATCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTCTTGGAGGGAAGGCAAGTGAAGAACTACATTGGGGAATCCAC  250

seq1  TGTCATAGCTATTGTAGCAGGAATCAGACTTGCCCATAATTCTTTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGCTATTGTAGCAGGAATCAGACTTGCCCATAATTCTTTGTGGC  300

seq1  TCCCTGTGAGTAGGTACCTTGAAATTTGGGGCACCAGTTTTACCTAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGAGTAGGTACCTTGAAATTTGGGGCACCAGTTTTACCTAAAAG  350

seq1  CTGAAGGAGGTAGATTTTTCTAGCTTTAATCACAAATCCACTAATTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAGGTAGATTTTTCTAGCTTTAATCACAAATCCACTAATTCACA  400

seq1  TTTGTGGTGGTGGTGTGAAAACAGGAAACTTAACTTGAATAGCCCACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTGGTGGTGTGAAAACAGGAAACTTAACTTGAATAGCCCACCAG  450

seq1  TGAGATGCTTAGACAAGTCACTTAAGTTCCTTGAGTAAGACCAACTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCTTAGACAAGTCACTTAAGTTCCTTGAGTAAGACCAACTTCTA  500

seq1  TTGTGCAACTTCTGTGGAGAAATGGAGGGTAGTGGTTTGAATGAGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAACTTCTGTGGAGAAATGGAGGGTAGTGGTTTGAATGAGAACAA  550

seq1  CTGCCATAGGAAGGATTAGGAGGTGTGGCCTTGTTATAATGTGTGACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATAGGAAGGATTAGGAGGTGTGGCCTTGTTATAATGTGTGACTTA  600

seq1  GGGTGGGTGATTGGGTTTTAAAAGCCACAGCATTTGCACTCTGTCGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTGATTGGGTTTTAAAAGCCACAGCATTTGCACTCTGTCGTATC  650

seq1  TATCTATCTTTTCTTTCTATCTTTCTTTCTATCTATCTATCTATCTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTTTTCTTTCTATCTTTCTTTCTATCTATCTATCTATCTATCT  700

seq1  ATCTATCTATCTATCTATCTATCATCTATCTACCTATCTATAATCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCATCTATCTACCTATCTATAATCTCCTC  750

seq1  TCTTTGTCATTGCCTTGTAGTTTTTGTCTAAACATATAAACTCTCAGCTA  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTTTGCCTTGTAGTTTTTGTCTAAACATATAAACTCTCAGCTA  800

seq1  TACCTCCAGAGCTCTGTTTGCTTGCCTGCTGCTATGTTTCCTGCTGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCAGAGCTCTGTTTGCTTGCCTGCTGCTATGTTTCCTGCTGTGAC  850

seq1  AGAGATGGAATTTACTACATTCTGGAGCCATGAGCCAGTTTTTTTTTTTC  900
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  AGAGATGG-ATTTACTACATTCTGGAGCCATGAGCCAGTTTTTTTTTTTT  899

seq1  CTTTTAAAAGTTGCCTTATTCATGGAGTCTATTTACAGCAATATAAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAGTTGCCTTATTCATGGAGTCTATTTACAGCAATATAAAAGT  949

seq1  AAGACAGGGGGTATAAATGAAGGTTCCAACAAAAACAGGGTATAGTAACA  1000
      |||||||||||||| |||||||||| |||||| |||||||||||||||||
seq2  AAGACAGGGGGTATTAATGAAGGTT-CAACAATAACAGGGTATAGTAACA  998

seq1  T-GAGTTTAATTTATGAGACTATAGGATTACTAGAGACTGTAAGATTAGA  1049
      | |||||| |||||||||||| |||||||||| |||||||| ||||  ||
seq2  TGGAGTTTTATTTATGAGACT-TAGGATTACTTGAGACTGTCAGATATGA  1047

seq1  AATTCTACTTCCAATA--ATAATGCTGTTAATAGCCAGG-CAGTGGTGGC  1096
      |||||| | | | |||  ||||||||||  || |||||| ||||||||||
seq2  AATTCTTCCTTCCATAATATAATGCTGTATAT-GCCAGGCCAGTGGTGGC  1096

seq1  ACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGT-GGATTTCTG  1145
      || ||||||  || ||| ||||||||||||  || ||||| |||||||||
seq2  ACTTGCCTT--ATTCCA-CACTTGGGAGGCGAAGACAGGTGGGATTTCTG  1143

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  1182
      ||||| ||                             
seq2  AGTTCCAG-----------------------------  1151

seq1: chr9_23733470_23733534
seq2: B6Ng01-134L05.g_74_138 (reverse)

seq1  AGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAGCCCAATGT  50
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGGTGGAGGAGGAGGAGGAGGAGGTAGAGGAGGAGGAGAGCCCAATGT  50

seq1  TTATGAATTAAGAAT  65
      |||||||||||||||
seq2  TTATGAATTAAGAAT  65