BAC Information

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BAC

Clone NameB6Ng01-134L16
Chromosome9 (Build37)
Map Location 112,218,893 - 112,357,841
singlet/doubletdoublet
Overlap geneLOC620760
Upstream geneLba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341
Downstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134L16.bB6Ng01-134L16.g
ACCDH934953DH934954
length1,1931,147
definitionDH934953|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L16, 5' end.DH934954|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,218,893 - 112,220,102)(112,356,702 - 112,357,841)
sequence
gaattcatgtcctcagacttcatggtaggtataagatgcacaggctttgg
ctctctctcccattcattctttctctttaggacacacctgccttctgctc
agaggaccagattatttgttcattgaaccaaaacaattcttatctcagtc
accacacaaccaactgttgtattcattctcataacccatccctctctttg
catttctaaagaactaggaatcaaacccatagatcctgttaatagcaaaa
gcatgctactcatactcaaatcttgtgtgtgtgtgtgtaaataatatata
atataaatacataatatatatgtgtttataatatataatattattataca
cacactttagttctgttacagatataatgtgatgtggttttattcttaat
ttgttattactatcctcttcttcttcctccctcctttctcctccttttct
atccccctccttctctgcctttccttctccttggtaattctaagacaggg
tctcattatgcagtctaggctggcctcacagttctttgataatctcccaa
gttctggggttacagtcatgtgacatcataccaatcttaaccctatattt
aaagatttatttattttttttaacaaggaggagcataagtcaacagcagg
tttctgaagggtagtttggaaatctgtgttcacagtcttcatgtgatatg
agtgctttgaaagtcttcttgtaacaacacaccaactccccagtgatgac
tgactatatcctttttaaaactgtgagtctgagtaagtccctccttctta
tctgacttcccttcaggtattttgtccttataatgaggcagtaacaattt
acagagtttaaaatgtagatctgatttcaattttggtgatatctgcagaa
actgatttttttttttaaatagatagacccatataacggtccacaattat
ttttattaactctttatttggaaaaagtttcaaagagaggatagcagacc
ttcatttgtactgcatatagatacaggcaaatatgtagccatttgtgttc
tttcttgaaatatagcatgaaactggcctaatggcaggtcatctttcaca
tctagtttggtttggactttattaaagacaaactttctagatcttaatac
attgcatgctagaactgtacaggctatattcataggatgccag
gaattctcaggttttcatagacatgttaccttctaggaggctgttatttt
ctgtgaagcgttgttaccagagatctctgtctctgagagatataaaatta
gccagagctgcattcctatttatccctggagtaacaggctggctcagatg
ccacacagggcaggacagacctttctctctgccccaaggtagcaataaaa
gagttatcaactcatcttgatcctcctctaggactcaaaaagaaagaaac
aacaacaacaaaaaatctaagtctggcacctagtttctttcctgagtggg
ttgtcatggcaacaggatatagcaactgttttcagtattctggggccttg
gcaatcctcacgagtttctctgcctcagcttctatgtatgcgcagacata
tggacaccagaacccgtgccagcatggaagagagggacggaaattcatgc
caggatccctctggggtgctcgcgacctcagctgaccttagagtttagct
cactgcacaccagtgctctgagcaggacccatctggttcctggcctggag
gaatttgacagcttttgctatgaagtgagggactgagttcattgagctca
aaggtcaatgccagctccagaggcattgaatccagagtccgaatctcagt
agttcaatttcattccagagggccacggttttgtcttgatcgtacttgtt
ctaataaaaggaaaatttccttcattgtgaatattgttgatactactatt
gactcatgatgagtggcttcattttaactcacaaatacatgatgttctgc
attcaatacacatttaagaaggcaagattttgtgcctgtgtgtgtgtgta
tgtgtgtcttgtgtacttccatataaggatctttataaatggcaattaag
attttaaactgtctcatttggatatttgaaagtgcaaggcgaccttgcat
attcacatgtcacattcgatgtccacatattttctgtttttccctgtttt
cactctcattatcgatgtctatgtggcatgttgtctgtattatttactca
tatttcttggtgtctctgcatgtctggtgaatgttatctaataaaataaa
cctcattgtgtgggcctatgtttcctgggtaatgtctttatatgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112218893_112220102
seq2: B6Ng01-134L16.b_44_1236

seq1  GAATTCATGTCCTCAGACTTCATGGTAGGTATATGATGCACAGGCTTTGG  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCATGTCCTCAGACTTCATGGTAGGTATAAGATGCACAGGCTTTGG  50

seq1  CTCTCTCTCCCATTCATTCTTTCTCTTTAGGACACACCTGCCTTCTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCCCATTCATTCTTTCTCTTTAGGACACACCTGCCTTCTGCTC  100

seq1  AGAGGACCAGATTATTTGTTCATTGAACCAAAACAATTCTTATCTCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCAGATTATTTGTTCATTGAACCAAAACAATTCTTATCTCAGTC  150

seq1  ACCACACAACCAACTGTTGTATTCATTCTCATAACCCATCCCTCTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAACCAACTGTTGTATTCATTCTCATAACCCATCCCTCTCTTTG  200

seq1  CATTTCTAAAGAACTAGGAATCAAACCCATAGATCCTGTTAATAGCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAAAGAACTAGGAATCAAACCCATAGATCCTGTTAATAGCAAAA  250

seq1  GCATGCTACTCATACTCAAATCTTGTGTGTGTGTGTGTAAATAATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTACTCATACTCAAATCTTGTGTGTGTGTGTGTAAATAATATATA  300

seq1  ATATAAATACATAATATATATGTGTTTATAATATATAATATTATTATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATACATAATATATATGTGTTTATAATATATAATATTATTATACA  350

seq1  CACACTTTAGTTCTGTTACAGATATAATGTGATGTGGTTTTATTCTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTAGTTCTGTTACAGATATAATGTGATGTGGTTTTATTCTTAAT  400

seq1  TTGTTATTACTATCCTCTTCTTCTTCCTCCCTCCTTTCTCCTCCTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTACTATCCTCTTCTTCTTCCTCCCTCCTTTCTCCTCCTTTTCT  450

seq1  ATCCCCCTCCTTCTCTGCCTTTCCTTCTCCTTGGTAATTCTAAGACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCTCCTTCTCTGCCTTTCCTTCTCCTTGGTAATTCTAAGACAGGG  500

seq1  TCTCATTATGCAGTCTAGGCTGGCCTCACAGTTCTTTGATAATCTCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTATGCAGTCTAGGCTGGCCTCACAGTTCTTTGATAATCTCCCAA  550

seq1  GTTCTGGGGTTACAGTCATGTGACATCATACCAATCTTAACCCTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGGTTACAGTCATGTGACATCATACCAATCTTAACCCTATATTT  600

seq1  AAAGATTTATTTATTTTTTTTAACAAGGAGGAGCATAAGTCAACAGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTATTTTTTTTAACAAGGAGGAGCATAAGTCAACAGCAGG  650

seq1  TTTCTGAAGGGTAGTTTGGAAATCTGTGTTCACAGTCTTCATGTGATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGGGTAGTTTGGAAATCTGTGTTCACAGTCTTCATGTGATATG  700

seq1  AGTGCTTTGAAAGTCTTCTTGTAACAACACACCAACTCCCCAGTGATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTGAAAGTCTTCTTGTAACAACACACCAACTCCCCAGTGATGAC  750

seq1  TGACTATATCCTTTTTAAAACTGTGAGTCTGAGTAAGTCCCTCCTTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATATCCTTTTTAAAACTGTGAGTCTGAGTAAGTCCCTCCTTCTTA  800

seq1  TCTGACTTCCCTTCAGGTATTTTGTCCTTATAATGAGGCAGTAACAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTCCCTTCAGGTATTTTGTCCTTATAATGAGGCAGTAACAATTT  850

seq1  ACAGAGTTTAAAATGTAGATCTGATTTCAATTTTGGTGATATCTGCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTTAAAATGTAGATCTGATTTCAATTTTGGTGATATCTGCAGAA  900

seq1  ACTGATTTTTTTTTTTAAATAGATAGACCCATATAACGGTCCACAATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTTTTTTTTAAATAGATAGACCCATATAACGGTCCACAATTAT  950

seq1  TTTTATTTAACTCTTTATTTGGAAAAAGTTTCAAAGAAGAAGGAATAGCA  1000
      ||||| |||||||||||||||||||||||||||||| |||  | ||||||
seq2  TTTTA-TTAACTCTTTATTTGGAAAAAGTTTCAAAG-AGA--GGATAGCA  996

seq1  GAACCTTCATATGTACTGCATATAGATACAAGGCAAATATGTAGCCATTT  1050
      | |||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  G-ACCTTCATTTGTACTGCATATAGATAC-AGGCAAATATGTAGCCATTT  1044

seq1  GTGTTCTTTC-TGAAATATAGCATGAAACTGGCCTAATGGCAGGTCATCC  1099
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GTGTTCTTTCTTGAAATATAGCATGAAACTGGCCTAATGGCAGGTCAT-C  1093

seq1  TTTCACATCTTAGTTTGTGTTTGACTTATATAAGGACAATCTTTTCTAAG  1149
      ||||||||| |||||||  || |||||   ||| ||||| | ||||| ||
seq2  TTTCACATC-TAGTTTGGTTTGGACTTTATTAAAGACAAAC-TTTCT-AG  1140

seq1  ATCTTAATACCATTGCCAAATGCTAAGACTGTCACCAGGCTATA-TCATA  1198
      ||||||||| ||||||   ||||||  |||||   ||||||||| |||||
seq2  ATCTTAATA-CATTGC---ATGCTAGAACTGT--ACAGGCTATATTCATA  1184

seq1  AGGAAATGCCAG  1210
       |   |||||||
seq2  GG---ATGCCAG  1193

seq1: chr9_112356702_112357841
seq2: B6Ng01-134L16.g_67_1213 (reverse)

seq1  GCACATACAAAGACACATACCAGG-AACATA-GCCCACACACTGAGGTTC  48
      ||||||| |||||||    ||||| |||||| ||||||||| ||||||| 
seq2  GCACATATAAAGACATTACCCAGGAAACATAGGCCCACACAATGAGGTTT  50

seq1  ATTT--ATAGATAAACATTCA-CAGACATGCAGAGACA-CAAG-AATATG  93
      ||||   ||||| |||||||| |||||||||||||||| |||| ||||||
seq2  ATTTTATTAGAT-AACATTCACCAGACATGCAGAGACACCAAGAAATATG  99

seq1  AGTAAATAATACAGAC-ACATGCCACATAGACATCGATAATGAGAGGTGA  142
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  AGTAAATAATACAGACAACATGCCACATAGACATCGATAATGAGA-GTGA  148

seq1  AAACAGGGAAAAACAG-AAATATGTGGACATCGAATGTGACATGTGAATA  191
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAACAGGGAAAAACAGAAAATATGTGGACATCGAATGTGACATGTGAATA  198

seq1  TGCAAGGTCGCCTTGCACTTTCAAATATCCAAATGAGACAGTTTAAAATC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTCGCCTTGCACTTTCAAATATCCAAATGAGACAGTTTAAAATC  248

seq1  TTAATTGCCATTTATAAAGATCCTTATATGGAAGTACACAAGACACACAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCCATTTATAAAGATCCTTATATGGAAGTACACAAGACACACAT  298

seq1  ACACACACACACAGGCACAAAATCTTGCCTTCTTAAATGTGTATTGAATG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGGCACAAAATCTTGCCTTCTTAAATGTGTATTGAATG  348

seq1  CAGAACATCATGTATTTGTGAGTTAAAATGAAGCCACTCATCATGAGTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATCATGTATTTGTGAGTTAAAATGAAGCCACTCATCATGAGTCA  398

seq1  ATAGTAGTATCAACAATATTCACAATGAAGGAAATTTTCCTTTTATTAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGTATCAACAATATTCACAATGAAGGAAATTTTCCTTTTATTAGA  448

seq1  ACAAGTACGATCAAGACAAAACCGTGGCCCTCTGGAATGAAATTGAACTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACGATCAAGACAAAACCGTGGCCCTCTGGAATGAAATTGAACTA  498

seq1  CTGAGATTCGGACTCTGGATTCAATGCCTCTGGAGCTGGCATTGACCTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTCGGACTCTGGATTCAATGCCTCTGGAGCTGGCATTGACCTTT  548

seq1  GAGCTCAATGAACTCAGTCCCTCACTTCATAGCAAAAGCTGTCAAATTCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAATGAACTCAGTCCCTCACTTCATAGCAAAAGCTGTCAAATTCC  598

seq1  TCCAGGCCAGGAACCAGATGGGTCCTGCTCAGAGCACTGGTGTGCAGTGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCCAGGAACCAGATGGGTCCTGCTCAGAGCACTGGTGTGCAGTGA  648

seq1  GCTAAACTCTAAGGTCAGCTGAGGTCGCGAGCACCCCAGAGGGATCCTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACTCTAAGGTCAGCTGAGGTCGCGAGCACCCCAGAGGGATCCTGG  698

seq1  CATGAATTTCCGTCCCTCTCTTCCATGCTGGCACGGGTTCTGGTGTCCAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTTCCGTCCCTCTCTTCCATGCTGGCACGGGTTCTGGTGTCCAT  748

seq1  ATGTCTGCGCATACATAGAAGCTGAGGCAGAGAAACTCGTGAGGATTGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCGCATACATAGAAGCTGAGGCAGAGAAACTCGTGAGGATTGCC  798

seq1  AAGGCCCCAGAATACTGAAAACAGTTGCTATATCCTGTTGCCATGACAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCCAGAATACTGAAAACAGTTGCTATATCCTGTTGCCATGACAAC  848

seq1  CCACTCAGGAAAGAAACTAGGTGCCAGACTTAGATTTTTTGTTGTTGTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGGAAAGAAACTAGGTGCCAGACTTAGATTTTTTGTTGTTGTTG  898

seq1  TTTCTTTCTTTTTGAGTCCTAGAGGAGGATCAAGATGAGTTGATAACTCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTGAGTCCTAGAGGAGGATCAAGATGAGTTGATAACTCT  948

seq1  TTTATTGCTACCTTGGGGCAGAGAGAAAGGTCTGTCCTGCCCTGTGTGGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTACCTTGGGGCAGAGAGAAAGGTCTGTCCTGCCCTGTGTGGC  998

seq1  ATCTGAGCCAGCCTGTTACTCCAGGGATAAATAGGAATGCAGCTCTGGCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCCAGCCTGTTACTCCAGGGATAAATAGGAATGCAGCTCTGGCT  1048

seq1  AATTTTATATCTCTCAGAGACAGAGATCTCTGGTAACAACGCTTCACAGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATATCTCTCAGAGACAGAGATCTCTGGTAACAACGCTTCACAGA  1098

seq1  AAATAACAGCCTCCTAGAAGGTAACATGTCTATGAAAACCTGAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGCCTCCTAGAAGGTAACATGTCTATGAAAACCTGAGAATTC  1147