BAC Information

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BAC

Clone NameB6Ng01-135A15
Chromosome9 (Build37)
Map Location 90,817,036 - 90,934,953
singlet/doubletdoublet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A15.bB6Ng01-135A15.g
ACCDH935186DH935187
length1,1491,080
definitionDH935186|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A15, 5' end.DH935187|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,817,036 - 90,818,181)(90,933,859 - 90,934,953)
sequence
gaattctacccgagtggatcctggcttgacatcggaaaagaatgggctgg
gataggtgccctcactgtggcccttgttttggcatgcatgttgtgtgtat
ggtgtatgtgtcagttgcggaatgcccaggtccacactgccgccatggtg
gtgcaagcttttgccacagtggaagcagggcagtcacctcagacttggct
tgttgccatgaagaatgaacaatgaagccattgctccacggggttgtaag
gctaagcactgcacagaggttagtctggaagctgtttggcaatctctggg
aggtatgtctgattgcatgagggttgagtgtcctagtgtcctccccccag
gaaaaacagcacgggagcaggtcggggttgctctgggtaaaaacctgtga
gcctaagagtcaatcctgtacatggcccctatttctgcacactggggatc
agacctctatcctcacccatggagcttgcttcaaaagaatataaagggga
attgtgggaagccattctgggctccctggccagcgggatggaaatctgtg
ccaggcagtaaaacaagcccatatttggtggatggctcgcccttaatccc
tgattggctgagcaagcctacctagtgaggtgatgtgacctgtggtgatt
ggttgaggcgtggttatgacttgagtgcataaaaactcttgtaccctggg
gctcgggggagttgaagagagaagctgcctgagtatactgctttaagaag
aaccggtggttgtgttttccttgctggtcgagttggacacaacagagagc
tactgtaccaaccactctgagaatacatgcccactagcataatagtgaca
tgaatgtcataaggataatcaaacatttgctgattggatttgaggaccag
gccacaaaatcaaacccatatctggcactattattagagctaaggacttg
tgactagataggccgtagtcctagagagagccaaacattctaatctgatc
agtctatttctgtttcagtattttttttacaaccttgccaagagtaaatc
ttagcatttataaagttaaagtggaaaataggggtactagaattcgcagc
ctaggatggattttatgtaaatctgatttcctagcctagactgtatttt
gaattctcagaagattgttaaaaatattaataaaaatccaaaattgctct
aaaaaggattctttttctgagcacatacatctcaatgaaattaagcaggc
tgtggttgttatttcttctagtggtttgggacagtgaaataagacataag
ccccagtattaagcgctaccaggggtccaatttctggaaaccctgatgtc
taatgcctaagccatagctgtactgattaaggcagtgactggccaattcc
acactgctttcactaatgagcctacagaaaactaggaattatcagttaag
gctattcctaagatgtttccccgcccccagtgtatcagctacatgactcc
cctctctaacctgtagttctgtgcagcatccctcaaaatagtcagattct
agttaacacacatttgctgtagagggaaaaggaaatgaaaaaaagaggcc
atcttaaatagtgcatgctgtcaaatgtcatccatttactgtatgtacat
ggaagtttctagaaatatacttcaagtaaatgatttctcatgtccttcca
ttttctgtgtatcttagcttcccaaagtaaaacaggtcaggtgccctgac
actgtgaaacaatggggccagcaatgctgacttcactgatgaaaattcca
gaaaaacatagaattctaactaaattcacccagggaattagtggcaaatg
actcacaagcatcttatcaaagagaaatgcaacagtaaataaaacaaaat
taatgtgtatggagaattacaataacaagatctttagattattttcatgg
attatcactaactttaaagtttcaacaacacatattgtcttttttttttt
tttcaaaatggttcttagtacgtttgggcaagtgctccatcagccttcaa
agttctctgctccttactttcatttttgtttctctttttttcccaatctg
tactctttctgtcttattttttctattgtagtaaatatgcagatgcatgg
tgggtagaaaccttgagtcctgaagctgaaacaacttcaagggcatgttg
gaacatgcttctcttacgactgtgtgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90817036_90818181
seq2: B6Ng01-135A15.b_64_1194

seq1  TCCTGGCTTGACATCGGAAAAGAATGGGCTGGGATAGGTGCCCTCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTTGACATCGGAAAAGAATGGGCTGGGATAGGTGCCCTCACTGT  50

seq1  GGCCCTTGTTTTGGCATGCATGTTGTGTGTATGGTGTATGTGTCAGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGTTTTGGCATGCATGTTGTGTGTATGGTGTATGTGTCAGTTGC  100

seq1  GGAATGCCCAGGTCCACACTGCCGCCATGGTGGTGCAAGCTTTTGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCCCAGGTCCACACTGCCGCCATGGTGGTGCAAGCTTTTGCCACA  150

seq1  GTGGAAGCAGGGCAGTCACCTCAGACTTGGCTTGTTGCCATGAAGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCAGGGCAGTCACCTCAGACTTGGCTTGTTGCCATGAAGAATGA  200

seq1  ACAATGAAGCCATTGCTCCACGGGGTTGTAAGGCTAAGCACTGCACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGCCATTGCTCCACGGGGTTGTAAGGCTAAGCACTGCACAGAG  250

seq1  GTTAGTCTGGAAGCTGTTTGGCAATCTCTGGGAGGTATGTCTGATTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTGGAAGCTGTTTGGCAATCTCTGGGAGGTATGTCTGATTGCAT  300

seq1  GAGGGTTGAGTGTCCTAGTGTCCTCCCCCCAGGAAAAACAGCACGGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTGAGTGTCCTAGTGTCCTCCCCCCAGGAAAAACAGCACGGGAGC  350

seq1  AGGTCGGGGTTGCTCTGGGTAAAAACCTGTGAGCCTAAGAGTCAATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGGGGTTGCTCTGGGTAAAAACCTGTGAGCCTAAGAGTCAATCCTG  400

seq1  TACATGGCCCCTATTTCTGCACACTGGGGATCAGACCTCTATCCTCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCCCCTATTTCTGCACACTGGGGATCAGACCTCTATCCTCACCC  450

seq1  ATGGAGCTTGCTTCAAAAGAATATAAAGGGGAATTGTGGGAAGCCATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTTGCTTCAAAAGAATATAAAGGGGAATTGTGGGAAGCCATTCT  500

seq1  GGGCTCCCTGGCCAGCGGGATGGAAATCTGTGCCAGGCAGTAAAACAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCTGGCCAGCGGGATGGAAATCTGTGCCAGGCAGTAAAACAAGC  550

seq1  CCATATTTGGTGGATGGCTCGCCCTTAATCCCTGATTGGCTGAGCAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTGGTGGATGGCTCGCCCTTAATCCCTGATTGGCTGAGCAAGCC  600

seq1  TACCTAGTGAGGTGATGTGACCTGTGGTGATTGGTTGAGGCGTGGTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGTGAGGTGATGTGACCTGTGGTGATTGGTTGAGGCGTGGTTATG  650

seq1  ACTTGAGTGCATAAAAACTCTTGTACCCTGGGGCTCGGGGGAGTTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTGCATAAAAACTCTTGTACCCTGGGGCTCGGGGGAGTTGAAGA  700

seq1  GAGAAGCTGCCTGAGTATACTGCTTTAAGAAGAACCGGTGGTTGTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTGCCTGAGTATACTGCTTTAAGAAGAACCGGTGGTTGTGTTTT  750

seq1  CCTTGCTGGTCGAGTTGGACACAACAGAGAGCTACTGTACCAACCACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGTCGAGTTGGACACAACAGAGAGCTACTGTACCAACCACTCT  800

seq1  GAGAATACATGCCCACTAGCATAATAGTGACATGAATGTCATAAGGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACATGCCCACTAGCATAATAGTGACATGAATGTCATAAGGATAA  850

seq1  TCAAACATTTGCTGATTGGATTTGAGGACCAGGCCACAAAATCAAACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATTTGCTGATTGGATTTGAGGACCAGGCCACAAAATCAAACCCA  900

seq1  TATCTGGCACTATTATTAGAGCTAAGGACTTGTGACTAGATAGGCCGTAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATCTGGCACTATTATTAGAGCTAAGGACTTGTGACTAGATAGGCCGT-A  949

seq1  GTCCTAGAGGAGAGCCAAACATTTCTAATCTGATCAGTCTTATTTCTGTT  1000
      |||||||| |||||||||||| ||||||||||||||||| ||||||||||
seq2  GTCCTAGA-GAGAGCCAAACA-TTCTAATCTGATCAGTC-TATTTCTGTT  996

seq1  TTCAAGTATTTTTTTTACAACTTTGCAAAGAGTAAATCTATAGCATTTAT  1050
      |   ||||||||||||||||| |||| |||||||||||| ||||||||||
seq2  T--CAGTATTTTTTTTACAACCTTGCCAAGAGTAAATCT-TAGCATTTAT  1043

seq1  ACAGTAAAAAGTGG-AAATAGGGGTTACTAAGAATTTCCGCAGCCCTAAG  1099
      | |||  ||||||| ||||||||| |||| ||||||  ||||| |||| |
seq2  AAAGT-TAAAGTGGAAAATAGGGG-TACT-AGAATT--CGCAG-CCTAGG  1087

seq1  ATGGATATTATGTAAGATCTGATTTTCCTAGCTCTAAGACTG-ATTTT  1146
      |||||| |||||||| |||||| ||||||||| || |||||| |||||
seq2  ATGGATTTTATGTAA-ATCTGA-TTTCCTAGC-CT-AGACTGTATTTT  1131

seq1: chr9_90933859_90934953
seq2: B6Ng01-135A15.g_65_1144 (reverse)

seq1  AATGCACACAGCTGTTAAAAGAG-AGCATGTTTCACAACCATGCCCTTGA  49
      |||||||||||  ||   ||||| ||||||||   | | |||||||||||
seq2  AATGCACACAGTCGT---AAGAGAAGCATGTT---CCAACATGCCCTTGA  44

seq1  AGTTTGGTTCCAGCCTTCAGGAACCTCCAGGTTTCTACCCACCATGCCAT  99
      ||||  ||| ||| ||||||||  ||| |||||||||||||||||| |||
seq2  AGTT--GTTTCAG-CTTCAGGA--CTCAAGGTTTCTACCCACCATG-CAT  88

seq1  CTGCCATTATTTAACCTACAATAG-AAAAATAAGACAGAAAGAGGTACAG  148
      ||||   ||||||  ||||||||| |||||||||||||||||| ||||||
seq2  CTGC--ATATTTA--CTACAATAGAAAAAATAAGACAGAAAGA-GTACAG  133

seq1  ATTGGGAAAAAAAGAGAAACAAAAATGAAAGTAAGGAGCAGAGAACTTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAAAAAGAGAAACAAAAATGAAAGTAAGGAGCAGAGAACTTTG  183

seq1  AAGGCTGATGGAGCACTTGCCCAAACGTACTAAGAACCATTTTGAAAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGATGGAGCACTTGCCCAAACGTACTAAGAACCATTTTGAAAAAA  233

seq1  AAAAAAAAGACAATATGTGTTGTTGAAACTTTAAAGTTAGTGATAATCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGACAATATGTGTTGTTGAAACTTTAAAGTTAGTGATAATCCA  283

seq1  TGAAAATAATCTAAAGATCTTGTTATTGTAATTCTCCATACACATTAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAATCTAAAGATCTTGTTATTGTAATTCTCCATACACATTAATT  333

seq1  TTGTTTTATTTACTGTTGCATTTCTCTTTGATAAGATGCTTGTGAGTCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTTACTGTTGCATTTCTCTTTGATAAGATGCTTGTGAGTCAT  383

seq1  TTGCCACTAATTCCCTGGGTGAATTTAGTTAGAATTCTATGTTTTTCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTAATTCCCTGGGTGAATTTAGTTAGAATTCTATGTTTTTCTGG  433

seq1  AATTTTCATCAGTGAAGTCAGCATTGCTGGCCCCATTGTTTCACAGTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATCAGTGAAGTCAGCATTGCTGGCCCCATTGTTTCACAGTGTC  483

seq1  AGGGCACCTGACCTGTTTTACTTTGGGAAGCTAAGATACACAGAAAATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCTGACCTGTTTTACTTTGGGAAGCTAAGATACACAGAAAATGG  533

seq1  AAGGACATGAGAAATCATTTACTTGAAGTATATTTCTAGAAACTTCCATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATGAGAAATCATTTACTTGAAGTATATTTCTAGAAACTTCCATG  583

seq1  TACATACAGTAAATGGATGACATTTGACAGCATGCACTATTTAAGATGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAGTAAATGGATGACATTTGACAGCATGCACTATTTAAGATGGC  633

seq1  CTCTTTTTTTCATTTCCTTTTCCCTCTACAGCAAATGTGTGTTAACTAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTCATTTCCTTTTCCCTCTACAGCAAATGTGTGTTAACTAGA  683

seq1  ATCTGACTATTTTGAGGGATGCTGCACAGAACTACAGGTTAGAGAGGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTATTTTGAGGGATGCTGCACAGAACTACAGGTTAGAGAGGGGA  733

seq1  GTCATGTAGCTGATACACTGGGGGCGGGGAAACATCTTAGGAATAGCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTAGCTGATACACTGGGGGCGGGGAAACATCTTAGGAATAGCCTT  783

seq1  AACTGATAATTCCTAGTTTTCTGTAGGCTCATTAGTGAAAGCAGTGTGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAATTCCTAGTTTTCTGTAGGCTCATTAGTGAAAGCAGTGTGGA  833

seq1  ATTGGCCAGTCACTGCCTTAATCAGTACAGCTATGGCTTAGGCATTAGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCAGTCACTGCCTTAATCAGTACAGCTATGGCTTAGGCATTAGAC  883

seq1  ATCAGGGTTTCCAGAAATTGGACCCCTGGTAGCGCTTAATACTGGGGCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGTTTCCAGAAATTGGACCCCTGGTAGCGCTTAATACTGGGGCTT  933

seq1  ATGTCTTATTTCACTGTCCCAAACCACTAGAAGAAATAACAACCACAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTATTTCACTGTCCCAAACCACTAGAAGAAATAACAACCACAGCC  983

seq1  TGCTTAATTTCATTGAGATGTATGTGCTCAGAAAAAGAATCCTTTTTAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATTTCATTGAGATGTATGTGCTCAGAAAAAGAATCCTTTTTAGA  1033

seq1  GCAATTTTGGATTTTTATTAATATTTTTAACAATCTTCTGAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTGGATTTTTATTAATATTTTTAACAATCTTCTGAGAATTC  1080