BAC Information

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BAC

Clone NameB6Ng01-135B14
Chromosome9 (Build37)
Map Location 96,217,659 - 96,347,765
singlet/doubletdoublet
Overlap geneTfdp2, 1110029I05Rik, Atp1b3, BC043934
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream geneRnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B14.bB6Ng01-135B14.g
ACCDH935226DH935227
length1,2341,085
definitionDH935226|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B14, 5' end.DH935227|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,346,508 - 96,347,765)(96,217,659 - 96,218,755)
sequence
gaattctctatgtagactgggctggcctcaaactcatagagatctgtcta
tctctggtttccgggtgctaggattaaaaggcatgtgccactacacccag
ctacagtgccccctttttaatgtcctaaagggctcagtaaaactcagaag
gttgggccagtgagatgactccatagaggcacttaccactgagcctgaca
acctgagttctaagaactgacacagtcaatggaatgactgtgtgcacatg
cgcgcacgcgctcatacacacacacacaaacacaaaaaaacaaactcaaa
aggctctctctgcacagaagaagggcaagtggaggaggcaggcttgtgtg
ggctacagcacaagaagagaaagaggcagccaaggtccaagtcacttgct
tgtgtgtgcacccacagaggagctgagacaggaatgcaggcagtgggaac
cctggcacacgtccttgggctgtgtgatgctgtgcaaagctggcctcttg
cttgacctacaacttggcctaccaccggactgatgaaaccattttccacc
atgccctcaccaaaacactacagctagccggtcctctgtctctgaattct
cagttcctggttggcagagtatatagtatatatattataaagcacctccc
ttccttcccctctctctctccttaacgattacctatgcagtacagggtga
ttttgaatttgggatccttctactttggctacttctactgatataatttt
aaagagagagagagagagagagaaagagagagagagagcaagcaaagctc
agataaaaaggctaggtatggtgacataagcatgcaattctagcatttag
gaggcaggtcaagagtccaaggacagccccagcaacggagagatggctca
gcagacaacagcactggcttctcttccagaggatctgggttcaactccca
acccctatatggcaagctcacaactgtaactggaatccagggggatctga
caccctcaccagacatacgctggcaaaacagcaacacccataaatcaagt
aaatagatattaaaaccaatgataaggctaatggatggctcctggtagaa
ctctggactgctctcgaggtcttggagtcaatttcagcaaatccatatgc
acacagcgcatccttataggaatctgagtcctctggtgtgtggaaagggc
cacaccatattcatttctctttagaataaataaa
gaattctttctctctggagtctgcctttctatagttttttgggttttttt
tcctcattcttgttcaaaattttattgtgcctgccctgcctcccaaataa
ccaatgaagaacactaatttcttcacggggcaggataattgtccagctgt
caccaagacataaaacccagtttacttcagaccacaacagaacagtcaca
agagtttgctatagtgtttgtttgtttggtcttgcagatatctccacagg
accttcttggttaaatcagggactacttttgaactctacccaatcagttt
caaatttagacccgaccaccggtgccactgtaccccaatcaaggtatgta
gttttttcaaggtgagaaaagcaagccacagagagagacctgacgctgct
gtgttgctgctgcaacaagtggctcgggttgagagcaagcagaccttgcc
agcagcacctccttagttcttattcctatgttgtgcagaaagaaaagcgc
tgtctcccctgaattaacgagcctgtgtgttcttaacttgcttgctagtg
taaaccaagggttgtgcttggatgctgaagtggccttagcaactgggcag
ctccctgcctcaaacagtcaccagtccagcagtgcagcctctcacttctc
ggagtcccgcggcgagaccccctgttcattcaacgatgaagatgaggaag
atgaagaggaggatccctcctccccagaataaagacaggagagaactcat
gttttaatatttgatgctcatatgtgtctttagtgtgagctcttgtgttt
tgaaatgattgcttcagtctttgcctttgtttgcatttgtgtttagtgaa
aactagagaaacacaataaagcaaatcacttgaaggctgagatgattgaa
ctgaaagttcccatagcgtgatgaaaccgagcagcagagcagcagacatg
tccaacaaagcgtgctttcttgaggacgtgagagtgcagtgacgaagtca
tttgtttcaggaggtagggttaagaccccatgggaggcattagatgcagc
cgcttgcaagagctctgcatggtacagcttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96346508_96347765
seq2: B6Ng01-135B14.b_45_1278 (reverse)

seq1  TTTATTTATTCATAAAATGAATATGAGTATGGTGTTGCTGCCTTCACACA  50
      ||||||||||| ||||  ||| |||| |||||||| ||  ||||  ||||
seq2  TTTATTTATTC-TAAAGAGAA-ATGAATATGGTGTGGC--CCTTTCCACA  46

seq1  CACCAGAAGAGGACATCAGATCCCATTAAAGATG-GCTGTGAGCCACTAT  99
      ||||   ||||||| |||||| ||  ||| |||| |||||| ||   |||
seq2  CACC---AGAGGAC-TCAGATTCCTATAAGGATGCGCTGTGTGC--ATAT  90

seq1  GTGATTGCTGAAAATTGAACTCAGGACCTCTGGAAGAGCAGT-CAGAGTT  148
      |   |||||| |||||||   || ||||||    |||||||| |||||||
seq2  GGATTTGCTG-AAATTGACTCCAAGACCTC---GAGAGCAGTCCAGAGTT  136

seq1  CTTAACCAGGGAGCCATCCATCTAGCCCTTATTCATTTGTTTTAATAATC  198
      ||  |||| |||||||||||| ||| ||||| ||||| |||||||| |||
seq2  CT--ACCA-GGAGCCATCCAT-TAG-CCTTA-TCATTGGTTTTAAT-ATC  179

seq1  TATTTACTTTGATTTTATGGGTGTTGCTGTTTTGCCAGCCGTTATGTCTG  248
      ||||||| |||| ||||||||||||||||||||||||||   ||||||||
seq2  TATTTAC-TTGA-TTTATGGGTGTTGCTGTTTTGCCAGC--GTATGTCTG  225

seq1  TGTGAGGGTGTCAGATCCCCCTGGAATTCCAGTTACAGTTGTGAGCTTGC  298
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  -GTGAGGGTGTCAGATCCCCCTGG-ATTCCAGTTACAGTTGTGAGCTTGC  273

seq1  CATATAGGGGTTGGGAGTTGAACCCAGATCCTCTGGAAGAGAAGCCAGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGGGTTGGGAGTTGAACCCAGATCCTCTGGAAGAGAAGCCAGTG  323

seq1  CTGTTGTCTGCTGAGCCATCTCTCCGTTGCTGGGGCTGTCCTTGGACTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCTGCTGAGCCATCTCTCCGTTGCTGGGGCTGTCCTTGGACTCT  373

seq1  TGACCTGCCTCCTAAATGCTAGAATTGCATGCTTATGTCACCATACCTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGCCTCCTAAATGCTAGAATTGCATGCTTATGTCACCATACCTAG  423

seq1  CCTTTTTATCTGAGC-TTGCTTGCTCTCTCTCTCTCTTTCTCTCTCTCTC  497
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATCTGAGCTTTGCTTGCTCTCTCTCTCTCTTTCTCTCTCTCTC  473

seq1  TCTCTCTCTTTAAAATTATATCAGTAGAAGTAGCCAAAGTAGAAGGATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTAAAATTATATCAGTAGAAGTAGCCAAAGTAGAAGGATCC  523

seq1  CAAATTCAAAATCACCCTGTACTGCATAGGTAATCGTTAAGGAGAGAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAAAATCACCCTGTACTGCATAGGTAATCGTTAAGGAGAGAGAG  573

seq1  AGGGGAAGGAAGGGAGGTGCTTTATAATATATATACTATATACTCTGCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGGAAGGGAGGTGCTTTATAATATATATACTATATACTCTGCCA  623

seq1  ACCAGGAACTGAGAATTCAGAGACAGAGGACCGGCTAGCTGTAGTGTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAACTGAGAATTCAGAGACAGAGGACCGGCTAGCTGTAGTGTTTT  673

seq1  GGTGAGGGCATGGTGGAAAATGGTTTCATCAGTCCGGTGGTAGGCCAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGCATGGTGGAAAATGGTTTCATCAGTCCGGTGGTAGGCCAAGT  723

seq1  TGTAGGTCAAGCAAGAGGCCAGCTTTGCACAGCATCACACAGCCCAAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTCAAGCAAGAGGCCAGCTTTGCACAGCATCACACAGCCCAAGGA  773

seq1  CGTGTGCCAGGGTTCCCACTGCCTGCATTCCTGTCTCAGCTCCTCTGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCCAGGGTTCCCACTGCCTGCATTCCTGTCTCAGCTCCTCTGTGG  823

seq1  GTGCACACACAAGCAAGTGACTTGGACCTTGGCTGCCTCTTTCTCTTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACACAAGCAAGTGACTTGGACCTTGGCTGCCTCTTTCTCTTCTT  873

seq1  GTGCTGTAGCCCACACAAGCCTGCCTCCTCCACTTGCCCTTCTTCTGTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTAGCCCACACAAGCCTGCCTCCTCCACTTGCCCTTCTTCTGTGC  923

seq1  AGAGAGAGCCTTTTGAGTTTGTTTTTTTGTGTTTGTGTGTGTGTGTATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCCTTTTGAGTTTGTTTTTTTGTGTTTGTGTGTGTGTGTATGA  973

seq1  GCGCGTGCGCGCATGTGCACACAGTCATTCCATTGACTGTGTCAGTTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGTGCGCGCATGTGCACACAGTCATTCCATTGACTGTGTCAGTTCTT  1023

seq1  AGAACTCAGGTTGTCAGGCTCAGTGGTAAGTGCCTCTATGGAGTCATCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGGTTGTCAGGCTCAGTGGTAAGTGCCTCTATGGAGTCATCTC  1073

seq1  ACTGGCCCAACCTTCTGAGTTTTACTGAGCCCTTTAGGACATTAAAAAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCAACCTTCTGAGTTTTACTGAGCCCTTTAGGACATTAAAAAGG  1123

seq1  GGGCACTGTAGCTGGGTGTAGTGGCACATGCCTTTTAATCCTAGCACCCG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGTAGCTGGGTGTAGTGGCACATGCCTTTTAATCCTAGCACCCG  1173

seq1  GAAACCAGAGATAGACAGATCTCTATGAGTTTGAGGCCAGCCCAGTCTAC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGAGATAGACAGATCTCTATGAGTTTGAGGCCAGCCCAGTCTAC  1223

seq1  ATAGAGAATTC  1258
      |||||||||||
seq2  ATAGAGAATTC  1234

seq1: chr9_96217659_96218755
seq2: B6Ng01-135B14.g_69_1153

seq1  GAATTCTTTCTCTCTGGAGTCTGCCTTTCTATAGTTTTTTGGGTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTCTGGAGTCTGCCTTTCTATAGTTTTTTGGGTTTTTTT  50

seq1  TCCTCATTCTTGTTCAAAATTTTATTGTGCCTGCCCTGCCTCCCAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTCTTGTTCAAAATTTTATTGTGCCTGCCCTGCCTCCCAAATAA  100

seq1  CCAATGAAGAACACTAATTTCTTCACGGGGCAGGATAATTGTCCAGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAAGAACACTAATTTCTTCACGGGGCAGGATAATTGTCCAGCTGT  150

seq1  CACCAAGACATAAAACCCAGTTTACTTCAGACCACAGCAGAACAGTCACA  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACCAAGACATAAAACCCAGTTTACTTCAGACCACAACAGAACAGTCACA  200

seq1  AGAGTTTGCTATAGTGTTTGTTTGTTTGGTCTTGCAGATATCTCCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGCTATAGTGTTTGTTTGTTTGGTCTTGCAGATATCTCCACAGG  250

seq1  ACCTTCTTGGTTAAATCAGGGACTACTTTTGAACTCTACCCAATCAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTGGTTAAATCAGGGACTACTTTTGAACTCTACCCAATCAGTTT  300

seq1  CAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAGGTATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAGGTATGTA  350

seq1  GTTTTTTCAAGGTGAGAAAAGCAAGCCACAGAGAGAGACCTGACGCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCAAGGTGAGAAAAGCAAGCCACAGAGAGAGACCTGACGCTGCT  400

seq1  GTGTTGCTGCTGCAACAAGTGGCTCGGGTTGAGAGCAAGCAGACCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTGCTGCAACAAGTGGCTCGGGTTGAGAGCAAGCAGACCTTGCC  450

seq1  AGCAGCACCTCCTTAGTTCTTATTCCTATGTTGTGCAGAAAGAAAAGCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACCTCCTTAGTTCTTATTCCTATGTTGTGCAGAAAGAAAAGCGC  500

seq1  TGTCTCCCCTGAATTAACGAGCCTGTGTGTTCTTAACTTGCTTGCTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCCTGAATTAACGAGCCTGTGTGTTCTTAACTTGCTTGCTAGTG  550

seq1  TAAACCAAGGGTTGTGCTTGGATGCTGAAGTGGCCTTAGCAACTGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAGGGTTGTGCTTGGATGCTGAAGTGGCCTTAGCAACTGGGCAG  600

seq1  CTCCCTGCCTCAAACAGTCACCAGTCCAGCAGTGCAGCCTCTCACTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCCTCAAACAGTCACCAGTCCAGCAGTGCAGCCTCTCACTTCTC  650

seq1  GGAGTCCCGCGGCGAGACCCCCTGTTCATTCAACGATGAAGATGAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCGCGGCGAGACCCCCTGTTCATTCAACGATGAAGATGAGGAAG  700

seq1  ATGAAGAGGAGGATCCCTCCTCCCCAGAATAAAGACAGGAGAGAACTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGGAGGATCCCTCCTCCCCAGAATAAAGACAGGAGAGAACTCAT  750

seq1  GTTTTAATATTTGATGCTCATATGTGTCTTTAGTGTGAGCTCTTGTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATATTTGATGCTCATATGTGTCTTTAGTGTGAGCTCTTGTGTTT  800

seq1  TGAAATGATTGCTTCAGTCTTTGCCTTTGTTTGCATTTGTGTTTAGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATTGCTTCAGTCTTTGCCTTTGTTTGCATTTGTGTTTAGTGAA  850

seq1  AACTAGAGAAACACAAT-AAGCAAATCACTTGAAGGCTGAGATGATTGAA  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACTAGAGAAACACAATAAAGCAAATCACTTGAAGGCTGAGATGATTGAA  900

seq1  CTGAAAGTTCCCATAGCGTGGATGAAACCGAGCAGCAGAGCAGCAGGACA  949
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  CTGAAAGTTCCCATAGCGT-GATGAAACCGAGCAGCAGAGCAGCA-GACA  948

seq1  TGGCCAACAAAGCGTGCTTTC-TGAGGACGTGGAGAGTGGCAGTGACGAA  998
      || |||||||||||||||||| ||||||||| |||||| |||||||||||
seq2  TGTCCAACAAAGCGTGCTTTCTTGAGGACGT-GAGAGT-GCAGTGACGAA  996

seq1  GGTCATTTGTTTTCAGGGAGGTAGGGTTTAAAGACCCCCAGTGGGAGCAT  1048
       |||||||| ||||| ||||||||||||  ||||||||   ||||||   
seq2  -GTCATTTG-TTTCA-GGAGGTAGGGTT--AAGACCCC--ATGGGAGGCA  1039

seq1  TTAGATGGCAGGCGGCTGCAAGGAGTCTGCAGTGGTAACAGCTTCTCTC  1097
      |||||| |||| ||  ||||||   |||||| |||| ||||||||||||
seq2  TTAGAT-GCAGCCGCTTGCAAGAGCTCTGCA-TGGT-ACAGCTTCTCTC  1085