BAC Information

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BAC

Clone NameB6Ng01-135E17
Chromosome9 (Build37)
Map Location 65,872,362 - 66,028,983
singlet/doubletdoublet
Overlap geneCsnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
Upstream geneDpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135E17.bB6Ng01-135E17.g
ACCDH935370DH935371
length1,135481
definitionDH935370|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E17, 5' end.DH935371|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,872,362 - 65,873,501)(66,028,585 - 66,028,983)
sequence
gaattctttacttagccaaactgccagtcatatgtgaatagcaaaaagat
catttttaaaactcagaattcttggggacagcaagatagcttagcagtta
aagggaccaccaaggcttggtgacttgttctcagaaggagaggactgact
cctgaaagttgtcttcaaatttacacttatatggagggtcttaccctcat
agaaagtacacacatacaatattttttaagagatgaagtacttagaagga
aagtaaggcaactgagtggatgtgtgtgggcgatttttttttaagattta
tttattttatttatatgagtatactgttcctatcttcagacacaacagaa
gagggcattggatcccatttgtagatggttgtgagccaccatgtggttgc
tgggaattgaactcaggacctcaggaagagcagccagtgctcttaaccac
tgagccatctttccagcccctgagtgtggactttttagagacagtttcca
tgaccctggtttgttttgttttgttttaagtagcttaaactttctatact
ttatgtaccttttcttatgaatctacacaggatgtatgttatcaagatgt
gtgaaaataaaaaagaagcatatattggttctagggatcaagacatccaa
cccaacaaagaagcagagtctcgccaatataatgaaaagttaggcgattc
cttgggtgatacctgttgccagttcagaaacttacagtcaggagttttgg
ggagctgtgtcaccaaaatgatgcaaatctagacctagctcagtgtatcc
tgcttgtctagcatgcgcattattctgggtcccatcactagtaatgcaat
aaataatgcatgaatgagcaaataaataagacttgaggtagaattaatga
tttgccataatatataataattaagttagtatataaattattttgttttt
cacttgtttaaaattatgtttagaaattctgtgtctgtatgtatatatat
cacgtattaggtgcccaatgaggacagaaaaagagcacagaatccccgga
attagagtttaatgcagctgttgactacttggatatggtggtgctgggga
ctgaacttggttctagagtagcagtaaggtgctct
gaattcttcttaccacattccacttttatggttacagatgatgaggtaaa
cacactgaaattgggttctgttacacagaatttgtttttgacagctgtgg
tcccacagtgcaagatgcaaagatacctgggtgattctgaaagatccttc
agactctttggaagaaaaatacaatttcattttcaattataaaagatatt
atgggatggagagatggctcagcagttaagagcactgactgctcttccag
agatcctgagttcaattcccagcaaacacatgatggctcacaaccatctg
taatgggatcagatgccctcttctggtgtgtctgaagacagctacagtgt
acccatataaatttaaaaggaggaagaggaggaggaggaggaggaagaac
actaggatggatccttccacacccttggctgagtcttgatcgctgtgtgt
cctgactctcccactcagcgcccctgctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65872362_65873501
seq2: B6Ng01-135E17.b_49_1183

seq1  GAATTCTTTACTTAGCCAAACTGCCAGTCATATGTGAATAGCAAAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTTAGCCAAACTGCCAGTCATATGTGAATAGCAAAAAGAT  50

seq1  CATTTTTAAAACTCAGAATTCTTGGGGACAGCAAGATAGCTTAGCAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAACTCAGAATTCTTGGGGACAGCAAGATAGCTTAGCAGTTA  100

seq1  AAGGGACCACCAAGGCTTGGTGACTTGTTCTCAGAAGGAGAGGACTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCACCAAGGCTTGGTGACTTGTTCTCAGAAGGAGAGGACTGACT  150

seq1  CCTGAAAGTTGTCTTCAAATTTACACTTATATGGAGGGTCTTACCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGTTGTCTTCAAATTTACACTTATATGGAGGGTCTTACCCTCAT  200

seq1  AGAAAGTACACACATACAATATTTTTTAAGAGATGAAGTACTTAGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTACACACATACAATATTTTTTAAGAGATGAAGTACTTAGAAGGA  250

seq1  AAGTAAGGCAACTGAGTGGATGTGTGTGGGCGATTTTTTTTTAAGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGCAACTGAGTGGATGTGTGTGGGCGATTTTTTTTTAAGATTTA  300

seq1  TTTATTTTATTTATATGAGTATACTGTTCCTATCTTCAGACACAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTATATGAGTATACTGTTCCTATCTTCAGACACAACAGAA  350

seq1  GAGGGCATTGGATCCCATTTGTAGATGGTTGTGAGCCACCATGTGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATTGGATCCCATTTGTAGATGGTTGTGAGCCACCATGTGGTTGC  400

seq1  TGGGAATTGAACTCAGGACCTCAGGAAGAGCAGCCAGTGCTCTTAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTGAACTCAGGACCTCAGGAAGAGCAGCCAGTGCTCTTAACCAC  450

seq1  TGAGCCATCTTTCCAGCCCCTGAGTGTGGACTTTTTAGAGACAGTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTTTCCAGCCCCTGAGTGTGGACTTTTTAGAGACAGTTTCCA  500

seq1  TGACCCTGGTTTGTTTTGTTTTGTTTTAAGTAGCTTAAACTTTCTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGGTTTGTTTTGTTTTGTTTTAAGTAGCTTAAACTTTCTATACT  550

seq1  TTATGTACCTTTTCTTATGAATCTACACAGGATGTATGTTATCAAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACCTTTTCTTATGAATCTACACAGGATGTATGTTATCAAGATGT  600

seq1  GTGAAAATAAAAAAGAAGCATATATTGGTTCTAGGGATCAAGACATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATAAAAAAGAAGCATATATTGGTTCTAGGGATCAAGACATCCAA  650

seq1  CCCAACAAAGAAGCAGAGTCTCGCCAATATAATGAAAAGTTAGGCGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAAGAAGCAGAGTCTCGCCAATATAATGAAAAGTTAGGCGATTC  700

seq1  CTTGGGTGATACCTGTTGCCAGTTCAGAAACTTACAGTCAGGAG-TTTGG  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGGGTGATACCTGTTGCCAGTTCAGAAACTTACAGTCAGGAGTTTTGG  750

seq1  GGAGCTGTGTCACCAAAATGATGCAAATCTAGACCTAGCTCAGTGTATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGTCACCAAAATGATGCAAATCTAGACCTAGCTCAGTGTATCC  800

seq1  TGCTTGTCTAGCATGCGCATTATTCTGGGTCCCATCACTAGTAATGCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCTAGCATGCGCATTATTCTGGGTCCCATCACTAGTAATGCAAT  850

seq1  AAATAATGCATGAATGAGCAAATAAATAAGACTTGAGGTAGAATTAATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGCATGAATGAGCAAATAAATAAGACTTGAGGTAGAATTAATGA  900

seq1  TTTGCCATAAATATATAATAATTAAGTTAGTATATAAAATTATTTTGTTT  949
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  TTTGCCAT-AATATATAATAATTAAGTTAGTATAT-AAATTATTTTGTTT  948

seq1  TTCACTTGTTTAAAATTATGTTTTAGAAATTCTGTGTCTGTATGTATATA  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCACTTGTTTAAAATTATG-TTTAGAAATTCTGTGTCTGTATGTATATA  997

seq1  TATCACGTATTAGGGTGCCCAAAGAGGACAG-AAAAGAGCACAGAATCCC  1048
      |||||||||||| ||||||||| |||||||| ||||||||||||||||||
seq2  TATCACGTATTA-GGTGCCCAATGAGGACAGAAAAAGAGCACAGAATCCC  1046

seq1  CGGAATTAGAGTTAAATGCAGCTGTGAACTACTT-GATATGGGTGGGTGC  1097
      ||||||||||||| |||||||||||  ||||||| |||||||   |||||
seq2  CGGAATTAGAGTTTAATGCAGCTGTTGACTACTTGGATATGG--TGGTGC  1094

seq1  TGGGGACTGAACTTGGGTTCATAGGAGTAGCAGTAA-GTGCTCT  1140
      |||||||||||||| ||||| || |||||||||||| |||||||
seq2  TGGGGACTGAACTT-GGTTC-TA-GAGTAGCAGTAAGGTGCTCT  1135

seq1: chr9_66028585_66028983
seq2: B6Ng01-135E17.g_68_466 (reverse)

seq1  TTCTTCCTCCTCCTCCTCCTCCTCTTCCTCCTTTTAAATTTATATGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCCTCCTCCTCCTCCTCTTCCTCCTTTTAAATTTATATGGGTA  50

seq1  CACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCTGATCCCATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCTGATCCCATTAC  100

seq1  AGATGGTTGTGAGCCATCATGTGTTTGCTGGGAATTGAACTCAGGATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGAGCCATCATGTGTTTGCTGGGAATTGAACTCAGGATCTC  150

seq1  TGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCATCCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCATCCCATA  200

seq1  ATATCTTTTATAATTGAAAATGAAATTGTATTTTTCTTCCAAAGAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTATAATTGAAAATGAAATTGTATTTTTCTTCCAAAGAGTCTG  250

seq1  AAGGATCTTTCAGAATCACCCAGGTATCTTTGCATCTTGCACTGTGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTTTCAGAATCACCCAGGTATCTTTGCATCTTGCACTGTGGGAC  300

seq1  CACAGCTGTCAAAAACAAATTCTGTGTAACAGAACCCAATTTCAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGTCAAAAACAAATTCTGTGTAACAGAACCCAATTTCAGTGTGT  350

seq1  TTACCTCATCATCTGTAACCATAAAAGTGGAATGTGGTAAGAAGAATTC  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCATCATCTGTAACCATAAAAGTGGAATGTGGTAAGAAGAATTC  399