BAC Information

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BAC

Clone NameB6Ng01-135E21
Chromosome9 (Build37)
Map Location 67,602,511 - 67,751,844
singlet/doubletdoublet
Overlap gene3300001A09Rik, EG244911, Vps13c
Upstream geneCar12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135E21.bB6Ng01-135E21.g
ACCDH935378DH935379
length1,1311,083
definitionDH935378|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E21, 5' end.DH935379|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,750,700 - 67,751,844)(67,602,511 - 67,603,537)
sequence
gaattcacagcccaactgtagtttgaaaaaaaaaaaaaaaatgaaaggag
ctggtggggggaggtaatatatacatacatacatagagacaaaaatctta
ttcagagatgcaaatcctaattaagagacctgagttttcccagaatagat
tacactcactgattcccccaaaaccattttttaaaataatttctatggtt
tcgaaattgcatgtgcatttgtgtacactcacatgtaccagaaaagaaac
taggatacacatttttaatgcacttgagctgaggccagctcccagtccag
aagactgacaagagcgtgctcagggacagaaacacatacctctttaatct
caaacttgagcaggagactaaccagctcctcatttggaacttcagcagct
tttttcagttctgaggctttgacagttctagcagcctgcgagtctccgtc
ctcagcatcaaagaactcctcgtcagactctaaaggacagagacactcgt
taacccagacagcatccactgagaacccacatggacacagagcctagatt
taacacagtaaactccatccacacatagaactttcatattcagacagaat
actttcaatgtacttttcaagtcccaaagggacttgaactggcatgtact
aaaacttaaaccaaacttatttttcactttagttcattcgttcaatatcc
agtaaaatatttactgggcatcatctatcatcaagatgtgactacccact
atggacaccagagtggccaggccttaaccttgttagattcacctatatct
acaagttgacattctatattgtaatctgaaattgtaaagcatcacttagc
cctagctagagaaaagtattacagagaaatacataccttatttgaatatt
tgggaaacactgtcaagtcccattatccacccttaagacaaacaacatac
aactctttactatccaacagagatgtgaacatcaaagactaaatgccctg
aagtcagtgtggttggcagccacagatagagactccttactctccgcaac
acctcactacataacaacgcatagttcgtgtccgaagaaacgcgtatgca
tcttcacttgatcactccatctagcacaatg
gaattcacagagatttgcctttccttactttcccgctgattgctgttgga
gagatgaggcactgtgttatgatgcctggtcgtgcccctgcccctttgtt
tatggggaggtgtctcagccttctgcttgcgtgcagcagccaacctaagg
ctgcattttggcaagccacaaatgcagagcatgaattcccatagaacata
attgggccaacctgccaagtttgaaggaacttgaaggggcttattctgca
gctgtggtctccaggaagtctctatccactgtggtattggctgcatttag
cctgtgtgtaaacagatggcctgtctgtgggagaagccccaactttagtg
ttttgcttttaagttgagtaggggcttctttcaaaagccttcttccatac
tatctctctgtaggttcttgctcttggctgggaatttacttccctgccat
tcatcttgtgctgttttgggaagctttggtctgtttttgtattttagaga
ccagacttcttcttctgttagcccgacttttccacaggcctttttggatg
taagcttggggtttaactgacataagttagggactgttttgttgtagtta
aacctgggtcttcctcccagccccacgctcccagaaataagactcagact
caaaatatatttataagtaactttggccatatatctaggctctattctga
gtagataataaccaaaataacccaattattttaacctacattctgccaca
tggctggttacctgtgcccagtaccatgagtctgtctcgtcagttctctt
cagtgactctctcaccttctctcttcagaattctttctcctccaagatat
cccacctctatttcatgcctaagctgcaggccataggctttttaattgac
aggtgatgaatccatacacactcagatatctctctacaatgtatggttta
ccacatgtatgtatacgttcaacatgcatgcttgatacacttgggaaaca
cagagggaatcaaaatccctcgggataacattagatggggtggagcctca
tggtgggagctataaaaaaactggatcccctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67750700_67751844
seq2: B6Ng01-135E21.b_47_1177 (reverse)

seq1  CATTGTTGCTAGATGGAGTGGAATCAGGTGAAGATTGGCATACGCTGTTT  50
      ||||| ||||||||||||||  |||| ||||||||  |||||||| ||||
seq2  CATTG-TGCTAGATGGAGTG--ATCAAGTGAAGAT--GCATACGC-GTTT  44

seq1  CTCTGTGACACGAAACCTATGCGTTGTTATGTAGTGAGGGTGTTTGCGGA  100
      || |  ||||||||  ||||||||||||||||||||| |||| |||||||
seq2  CT-TCGGACACGAA--CTATGCGTTGTTATGTAGTGA-GGTG-TTGCGGA  89

seq1  GAGTAAGGAGTCTCTTATCTGT-GCTGCCAACCAACACTGACTTCAGGGC  149
      |||||||||||||| ||||||| |||||||||| ||||||||||||||||
seq2  GAGTAAGGAGTCTC-TATCTGTGGCTGCCAACC-ACACTGACTTCAGGGC  137

seq1  ATTTTAGTCTTTGATGTTCACATCTCTGTTGGATAAGTAAAGAGTTGTAT  199
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  A-TTTAGTCTTTGATGTTCACATCTCTGTTGGAT-AGTAAAGAGTTGTAT  185

seq1  GTTGTTTGTCTTAAGGGTGGATAATGGGACTTGACAGTGTTTTCCAAATA  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTGTTTGTCTTAAGGGTGGATAATGGGACTTGACAGTGTTTCCCAAATA  235

seq1  TTCAAATAAGGTATTGTATTTCTCTGTAATACTTTTCTCTAGCTAGGGCT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAAGGTA-TGTATTTCTCTGTAATACTTTTCTCTAGCTAGGGCT  284

seq1  AAGTGATGCTTTACAATTTCAGATTACAATATAGAATGTCAACTTGTAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGCTTTACAATTTCAGATTACAATATAGAATGTCAACTTGTAGA  334

seq1  TATAGGTGAATCTAACAAGGTTAAGGCCTGGCCACTCTGGTGTCCATAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGAATCTAACAAGGTTAAGGCCTGGCCACTCTGGTGTCCATAGT  384

seq1  -GGTAGTCACATCTTGATGATAGATGATGCCCAGTAAATATTTTACTGGA  448
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTCACATCTTGATGATAGATGATGCCCAGTAAATATTTTACTGGA  434

seq1  TATTGAACGAATGAACTAAAGTGAAAAATAAGTTTGGTTTAAGTTTTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACGAATGAACTAAAGTGAAAAATAAGTTTGGTTTAAGTTTTAGT  484

seq1  ACATGCCAGTTCAAGTCCCTTTGGGACTTGAAAAGTACATTGAAAGTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCAGTTCAAGTCCCTTTGGGACTTGAAAAGTACATTGAAAGTATT  534

seq1  CTGTCTGAATATGAAAGTTCTATGTGTGGATGGAGTTTACTGTGTTAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAATATGAAAGTTCTATGTGTGGATGGAGTTTACTGTGTTAAAT  584

seq1  CTAGGCTCTGTGTCCATGTGGGTTCTCAGTGGATGCTGTCTGGGTTAACG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCTGTGTCCATGTGGGTTCTCAGTGGATGCTGTCTGGGTTAACG  634

seq1  AGTGTCTCTGTCCTTTAGAGTCTGACGAGGAGTTCTTTGATGCTGAGGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCTGTCCTTTAGAGTCTGACGAGGAGTTCTTTGATGCTGAGGAC  684

seq1  GGAGACTCGCAGGCTGCTAGAACTGTCAAAGCCTCAGAACTGAAAAAAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCGCAGGCTGCTAGAACTGTCAAAGCCTCAGAACTGAAAAAAGC  734

seq1  TGCTGAAGTTCCAAATGAGGAGCTGGTTAGTCTCCTGCTCAAGTTTGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGTTCCAAATGAGGAGCTGGTTAGTCTCCTGCTCAAGTTTGAGA  784

seq1  TTAAAGAGGTATGTGTTTCTGTCCCTGAGCACGCTCTTGTCAGTCTTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGGTATGTGTTTCTGTCCCTGAGCACGCTCTTGTCAGTCTTCTG  834

seq1  GACTGGGAGCTGGCCTCAGCTCAAGTGCATTAAAAATGTGTATCCTAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAGCTGGCCTCAGCTCAAGTGCATTAAAAATGTGTATCCTAGTT  884

seq1  TCTTTTCTGGTACATGTGAGTGTACACAAATGCACATGCAATTTCGAAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGGTACATGTGAGTGTACACAAATGCACATGCAATTTCGAAAC  934

seq1  CATAGAAATTATTTTAAAAAATGGTTTTGGGGGAATCAGTGAGTGTAATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAATTATTTTAAAAAATGGTTTTGGGGGAATCAGTGAGTGTAATC  984

seq1  TATTCTGGGAAAACTCAGGTCTCTTAATTAGGATTTGCATCTCTGAATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGGAAAACTCAGGTCTCTTAATTAGGATTTGCATCTCTGAATAA  1034

seq1  GATTTTTGTCTCTATGTATGTATGTATATATTACCTCCCCCCACCAGCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTCTCTATGTATGTATGTATATATTACCTCCCCCCACCAGCTC  1084

seq1  CTTTCATTTTTTTTTTTTTTTTCAAACTACAGTTGGGCTGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTTTTTTTTTTTTTTCAAACTACAGTTGGGCTGTGAATTC  1131

seq1: chr9_67602511_67603537
seq2: B6Ng01-135E21.g_69_1151

seq1  GAATTCACAGAGATTTGCCTTTCCTTACTTTCCCGCTGATTGCTGTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATTTGCCTTTCCTTACTTTCCCGCTGATTGCTGTTGGA  50

seq1  GAGATGAGGCACTGTGTTATGATGCCTGGTCGTGCCCCTGCCCCTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGCACTGTGTTATGATGCCTGGTCGTGCCCCTGCCCCTTTGTT  100

seq1  TATGGGGAGGTGTCTCAGCCTTCTGCTTGCGTGCAGCAGCCAACCTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGAGGTGTCTCAGCCTTCTGCTTGCGTGCAGCAGCCAACCTAAGG  150

seq1  CTGCATTTTGGCAAGCCACAAATGCAGAGCATGAATTCCCATAGAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTTGGCAAGCCACAAATGCAGAGCATGAATTCCCATAGAACATA  200

seq1  ATTGGGCCAACCTGCCAAGTTTGAAGGAACTTGAAGGGGCTTATTCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCAACCTGCCAAGTTTGAAGGAACTTGAAGGGGCTTATTCTGCA  250

seq1  GCTGTGGTCTCCAGGAAGTCTCTATCCACTGTGGTATTGGCTGCATTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTCTCCAGGAAGTCTCTATCCACTGTGGTATTGGCTGCATTTAG  300

seq1  CCTGTGTGTAAACAGATGGCCTGTCTGTGGGAGAAGCCCCAACTTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTAAACAGATGGCCTGTCTGTGGGAGAAGCCCCAACTTTAGTG  350

seq1  TTTTGCTTTTAAGTTGAGTAGGGGCTTCTTTCAAAAGCCTTCTTCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTTAAGTTGAGTAGGGGCTTCTTTCAAAAGCCTTCTTCCATAC  400

seq1  TATCTCTCTGTAGGTTCTTGCTCTTGGCTGGGAATTTACTTCCCTGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTGTAGGTTCTTGCTCTTGGCTGGGAATTTACTTCCCTGCCAT  450

seq1  TCATCTTGTGCTGTTTTGGGAAGCTTTGGTCTGTTTTTGTATTTTAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGTGCTGTTTTGGGAAGCTTTGGTCTGTTTTTGTATTTTAGAGA  500

seq1  CCAGACTTCTTCTTCTGTTAGCCCGACTTTTCCACAGGCCTTTTTGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTCTTCTTCTGTTAGCCCGACTTTTCCACAGGCCTTTTTGGATG  550

seq1  TAAGCTTGGGGTTTAACTGACATAAGTTAGGGACTGTTTTGTTGTAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTGGGGTTTAACTGACATAAGTTAGGGACTGTTTTGTTGTAGTTA  600

seq1  AACCTGGGTCTTCCTCCCAGCCCCACGCTCCCAGAAATAAGACTCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGTCTTCCTCCCAGCCCCACGCTCCCAGAAATAAGACTCAGACT  650

seq1  CAAAATATATTTATAAGTAAC-TTGGCCATATATCTAGGCTCTATTCTGA  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAAATATATTTATAAGTAACTTTGGCCATATATCTAGGCTCTATTCTGA  700

seq1  GTAGATAATAACCAAAATAACCCAATTATTTTAACCTACATTCTGCCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAATAACCAAAATAACCCAATTATTTTAACCTACATTCTGCCACA  750

seq1  TGGCTGGTTACCTGTGCCCAGTACCATGAGTCTGTCTCGTCAGTTCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTTACCTGTGCCCAGTACCATGAGTCTGTCTCGTCAGTTCTCTT  800

seq1  CAGTGACTCTCTCACCTTCTCTCTTCCAGAATTCTTTCTCCTCCAAGATA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGTGACTCTCTCACCTTCTCTCTT-CAGAATTCTTTCTCCTCCAAGATA  849

seq1  TCCCACCTCTATTTCATGCCTAAGCTGCAGGCCATAGGCTTTTTAATTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTCTATTTCATGCCTAAGCTGCAGGCCATAGGCTTTTTAATTGA  899

seq1  CAGGTGATGAATCCATACAACACTCAAGATATTCTCTCTACAATGTATGG  949
      |||||||||||||||||| |||||| ||||| ||||||||||||||||||
seq2  CAGGTGATGAATCCATAC-ACACTC-AGATA-TCTCTCTACAATGTATGG  946

seq1  TTTACCCACATGTATGTATACGTACAACATGCATGCTTGATACACTTGGA  999
      |||| |||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TTTA-CCACATGTATGTATACGTTCAACATGCATGCTTGATACACTTGG-  994

seq1  GACACACAGAGGGAATCAGATCCCCTGG----------------------  1027
      || ||||||||||||||| |  |||| |                      
seq2  GAAACACAGAGGGAATCAAAATCCCTCGGGATAACATTAGATGGGGTGGA  1044

seq1  ---------------------------------------  1027
                                             
seq2  GCCTCATGGTGGGAGCTATAAAAAAACTGGATCCCCTGG  1083