BAC Information

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BAC

Clone NameB6Ng01-135H08
Chromosome9 (Build37)
Map Location 121,331,450 - 121,463,368
singlet/doubletdoublet
Overlap geneTrak1, Cck
Upstream geneMyrip, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
Downstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H08.bB6Ng01-135H08.g
ACCDH935488DH935489
length1,083524
definitionDH935488|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H08, 5' end.DH935489|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,462,279 - 121,463,368)(121,331,450 - 121,331,979)
sequence
gaattcactgttccagtgttctgctggaatatgcattccactctttgtag
gaagtggtcttatgcaaactctttacctgtttggttcctctgtttgccca
cactgtaaatggaaatgtgcctaggtcttaggattcttgtgctctgtgcc
tttgaggagagcgcagttaaatcccaggggactgtaggtaatccaggttg
gtttgtttgactgattgattttataaatgttacacactgaacaggcaata
ctttttgtaaaaatattttcatattgaagggaaagaaacagctggacccc
ctggacagtgtctagtgacctgctctgctccacccccatcccccacatgt
agtggtcactttattgtttactttcttgctgtcactgcggctcagtggtc
tctgagacaccacagacggccacagtcagtggagatagctagaccctgtc
cttccttcctctggctcctacattctttcttgtcccttttctatgagctt
tggaggggtgcggcatgcacaggcacagagatgctgtgctgcagcaacaa
tcacttattcttgcaatttggtcagttatgagtctctgcggcaccctcct
attagaaaacacttccctcgactaaggcaatagcagcggtaatgtgagat
tacaagcataagtgccgaggagggaatgtccatttaataagatatcatca
tcagcttctccttgaggcctgggatttctgaaccacaaagctctgccctg
gcctacagttccaagcttgggttcccgtctctggagcctcaaattgttgc
actctcacacttctgctgctgttgcaccagtgatcacacctggcctggca
tgccgatctccagtgaaacagagggtggcagccaagcaggagtcagcctg
ccctgacacacaggtggtttcccctgtctttctgcgttcagcctgaagaa
acattttaaaaggcagcggttcctcagctgtgttcacagaatatttgtta
cactggtccttctactctcgatttaaaacagtagtttgggctgggactgt
agcttagtgttcacacccaggacataaaaacaa
tttgaggggtccatctgttagcttaaaagatagtggtctctggcagttca
tggggaaaacaggtcagtccccccaccacccgtaatagctctaaagacac
tggggtgggctcttctcctagggtggatatcagctatgaaggcgagggta
tgcatacacacttggccaagggccagggcaatggtgcattcccaggaatg
agcaacttgattcattcctcactaaaagccttggggataagtggccacca
taggtcaacacctagagttccagtctggggtgaggtctgcgattactgtg
ttaagtccgtagttacacctcacctgtccttgaaacttggcctcgctctc
tgtttgatttgttatatgggactcctgtttgcattgcaggcttgttctgg
ctataagtggaatagtgtttataaagtgcccagggaacatgttgttaatc
tcagtaatggtcagagtctgtttttcctctctgccgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121462279_121463368
seq2: B6Ng01-135H08.b_45_1127 (reverse)

seq1  TTGTTTTTATGTCACTGGGTGTTGAACCACTAAGCTACAGTCCCAGCCCA  50
      ||||||||||||| ||||||| |||| |||||||||||||||||||||| 
seq2  TTGTTTTTATGTC-CTGGGTG-TGAA-CACTAAGCTACAGTCCCAGCCC-  46

seq1  AAACTACTGTTTTTAAAAATCTGAGAGTAGAGAGAACAGTGTAACAAATA  100
      |||||||||||||   ||||| |||||||||  || ||||||||||||||
seq2  AAACTACTGTTTT---AAATC-GAGAGTAGAAGGACCAGTGTAACAAATA  92

seq1  -TCTGTGAACACAGCTGAGGAA-CGCTGCCTTTTGAAATGTTTCTTCAGG  148
       ||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TTCTGTGAACACAGCTGAGGAACCGCTGCCTTTTAAAATGTTTCTTCAGG  142

seq1  CTGAACGCAGAAAAGACAGGGGAAACCACCTGTGTGTCAGGGCAGGCTGA  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGCAG-AAAGACAGGGGAAACCACCTGTGTGTCAGGGCAGGCTGA  191

seq1  CTCCTGCTTGGCTGCCACCCTCTGTTTCACTGGAGATCGGCATGCCAGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTGGCTGCCACCCTCTGTTTCACTGGAGATCGGCATGCCAGGC  241

seq1  CAGGTGTGATCACTGGTGCAACAGCAGCAGAAGTGTGAGAGTGCAACAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGATCACTGGTGCAACAGCAGCAGAAGTGTGAGAGTGCAACAAT  291

seq1  TTGAGGCTCCAGAGACGGGAACCCAAGCTTGGAACTGTAGGCCAGGGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTCCAGAGACGGGAACCCAAGCTTGGAACTGTAGGCCAGGGCAG  341

seq1  AGCTTTGTGGTTCAGAAATCCCAGGCCTCAAGGAGAAGCTGATGATGATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGGTTCAGAAATCCCAGGCCTCAAGGAGAAGCTGATGATGATA  391

seq1  TCTTATTAAATGGACATTCCCTCCTCGGCACTTATGCTTGTAATCTCACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTAAATGGACATTCCCTCCTCGGCACTTATGCTTGTAATCTCACA  441

seq1  TTACCGCTGCTATTGCCTTAGTCGAGGGAAGTGTTTTCTAATAGGAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGCTGCTATTGCCTTAGTCGAGGGAAGTGTTTTCTAATAGGAGGGT  491

seq1  GCCGCAGAGACTCATAACTGACCAAATTGCAAGAATAAGTGATTGTTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAGAGACTCATAACTGACCAAATTGCAAGAATAAGTGATTGTTGCT  541

seq1  GCAGCACAGCATCTCTGTGCCTGTGCATGCCGCACCCCTCCAAAGCTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACAGCATCTCTGTGCCTGTGCATGCCGCACCCCTCCAAAGCTCAT  591

seq1  AGAAAAGGGACAAGAAAGAATGTAGGAGCCAGAGGAAGGAAGGACAGGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGACAAGAAAGAATGTAGGAGCCAGAGGAAGGAAGGACAGGGT  641

seq1  CTAGCTATCTCCACTGACTGTGGCCGTCTGTGGTGTCTCAGAGACCACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATCTCCACTGACTGTGGCCGTCTGTGGTGTCTCAGAGACCACTG  691

seq1  AGCCGCAGTGACAGCAAGAAAGTAAACAATAAAGTGACCACTACATGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCAGTGACAGCAAGAAAGTAAACAATAAAGTGACCACTACATGTGG  741

seq1  GGGATGGGGGTGGAGCAGAGCAGGTCACTAGACACTGTCCAGGGGGTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGGGTGGAGCAGAGCAGGTCACTAGACACTGTCCAGGGGGTCCA  791

seq1  GCTGTTTCTTTCCCTTCAATATGAAAATATTTTTACAAAAAGTATTGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTTTCCCTTCAATATGAAAATATTTTTACAAAAAGTATTGCCT  841

seq1  GTTCAGTGTGTAACATTTATAAAATCAATCAGTCAAACAAACCAACCTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTGTAACATTTATAAAATCAATCAGTCAAACAAACCAACCTGG  891

seq1  ATTACCTACAGTCCCCTGGGATTTAACTGCGCTCTCCTCAAAGGCACAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTACAGTCCCCTGGGATTTAACTGCGCTCTCCTCAAAGGCACAGA  941

seq1  GCACAAGAATCCTAAGACCTAGGCACATTTCCATTTACAGTGTGGGCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGAATCCTAAGACCTAGGCACATTTCCATTTACAGTGTGGGCAAA  991

seq1  CAGAGGAACCAAACAGGTAAAGAGTTTGCATAAGACCACTTCCTACAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAACCAAACAGGTAAAGAGTTTGCATAAGACCACTTCCTACAAAG  1041

seq1  AGTGGAATGCATATTCCAGCAGAACACTGGAACAGTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATGCATATTCCAGCAGAACACTGGAACAGTGAATTC  1083

seq1: chr9_121331450_121331979
seq2: B6Ng01-135H08.g_69_598

seq1  GAATTCTTTGAGGGGTCCATCTGTTAGCTTAAAAGATAGTGGTCTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGGGGTCCATCTGTTAGCTTAAAAGATAGTGGTCTCTGGC  50

seq1  AGTTCATGGGGAAAACAGGTCAGTCCCCCCACCACCCGTAATAGCTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGGGAAAACAGGTCAGTCCCCCCACCACCCGTAATAGCTCTAA  100

seq1  AGACACTGGGGTGGGCTCTTCTCCTAGGGTGGATATCAGCTATGAAGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGGGGTGGGCTCTTCTCCTAGGGTGGATATCAGCTATGAAGGCG  150

seq1  AGGGTATGCATACACACTTGGCCAAGGGCCAGGGCAATGGTGCATTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATGCATACACACTTGGCCAAGGGCCAGGGCAATGGTGCATTCCCA  200

seq1  GGAATGAGCAACTTGATTCATTCCTCACTAAAAGCCTTGGGGATAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGCAACTTGATTCATTCCTCACTAAAAGCCTTGGGGATAAGTGG  250

seq1  CCACCATAGGTCAACACCTAGAGTTCCAGTCTGGGGTGAGGTCTGCGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATAGGTCAACACCTAGAGTTCCAGTCTGGGGTGAGGTCTGCGATT  300

seq1  ACTGTGTTAAGTCCGTAGTTACACCTCACCTGTCCTTGAAACTTGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTAAGTCCGTAGTTACACCTCACCTGTCCTTGAAACTTGGCCTC  350

seq1  GCTCTCTGTTTGATTTGTTATATGGGACTCCTGTTTGCATTGCAGGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGTTTGATTTGTTATATGGGACTCCTGTTTGCATTGCAGGCTTG  400

seq1  TTCTGGCTATAAGTGGAATAGTGTTTATAAAGTGCCCAGGGAACATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTATAAGTGGAATAGTGTTTATAAAGTGCCCAGGGAACATGTTG  450

seq1  TTAATCTCAGTAATGGTCAGAGTCTGTTTTTCCTCTCTGCCGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCAGTAATGGTCAGAGTCTGTTTTTCCTCTCTGCCGTGTGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  530
      ||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  530