BAC Information

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BAC

Clone NameB6Ng01-135M16
Chromosome9 (Build37)
Map Location 59,689,954 - 59,830,992
singlet/doubletdoublet
Overlap geneMyo9a, LOC100040361, Nr2e3, EG665389, Thsd4
Upstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135M16.bB6Ng01-135M16.g
ACCDH935741DH935742
length1,1141,128
definitionDH935741|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M16, 5' end.DH935742|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,829,848 - 59,830,992)(59,689,954 - 59,691,082)
sequence
gaattcttgaagaatgggatagtcaggaccacttaaaatggatgaattgt
ttgtttctagagtttcccacgtaacacgtacaaacatgtgtctgtgagta
actaaaaccctagaagacaaaagtaatagatgaggagactcccatcctag
agagtgtactgagtgagaaaaggttgtcagctatgtatagaagaaagcgc
cagaggtcagtgagcccttggcatcatttggaaggatccccagaacctgc
atgggcccccactaatgtgccttccttctgtctcacagtgctcagcggag
tgtggggcaggagtgaggacacgttcagtggtgtgcatgaccaaccacgt
cagcagcctgccgttggaaggctgtgggaacaacaggccagtggaggcta
cgccgtgtgacaatgggccctgcacaggcaaggtggagtggttcactggc
agctggagtcaggtacgtagccagagctgggtacatctgtctgttcctgg
aagaggcaattagcagaggggttagaagacagctttgaatctggctatgc
tactagctgcctgctgtgaccaggaaaagctgctatgttcttggtatatc
attcaggcaccctttctgcgtgctcaccttggtcagccaagaaggttgag
tgtgcacctactgtgtgctcccttaagcaccttgctcagccaacaagatt
caatgtgtacctacgatgtgctcacttaagcatgtgagctacatctgtga
gcaaaacaaatctccgtgcctcagggaatgagtgcatagcctagcataca
gtaaatgcagcagtggctgctgccgccgccgctgtatcgttgccattagc
tggtttgttagtactcaacaatgtcagaaactgcccttttaaaatctgga
gacgggccgggcatggtagctcacaactttaatcccttccctcagagcag
aggcagtggagctatctgagttcagaaaagtctggtctacagatgagttc
aggacagccatgctacacagagaaccctgtcttgaaaacagatataataa
aataaatctgcgtgtgctgaaagattgtcatgataagcatttgtcccagc
tcgaggtccgcatt
gaattccaggaaaggggaccaggaaccaaggaacattagtttcttgaaaa
tatattttatagtcatgagctgggtatcatttcactgatttgaccctgtt
ttcttttagtgatgttttataattctcaatgtagacatctttacttattc
cattaagtttatattattttgattttatgaatggaattactagtctttga
tcatttgtatagaaatagagttgattactccatatcaatttaatttcttt
tatttttactgaatgtattagctataaaaggttttgtagattctctttag
gactgtctctgtgtgattgggccatttttcataaagtcttctgtaaagat
gcttgatttatttttcccaatggatcttaaatgtttatatgcatatatac
attatgaaattgatgaccttatatttactgagtctgtaagaaaaatcggt
tttaaaatattatttttaatatttcaaatatccataaggaaaaaacattc
tttggttttcagtctttatttgtaagataaatagatctctaaagtatatg
ctacatctcagcagtgtatttgttgccaaaaggtgatacaaaggggtcat
gttcattatgttttggtgtcaaaatagatgaattttatatatatttagct
tttggcctgcttactttttatatttcctagtggtaatgcttaaatgaagt
aaataagaattttctgttgaatttcctttttggcttcacttaatcaagtg
ctggtgatagttacagaacttttcttagtatctgacatttatcaaatgtt
taaaacttagtttattaattctatagaatttttttctttagtattttgaa
ggtgcactaatttgtttccattatctatgtttttttttgtttgtttgttt
tttgtgtgtggtaggtattacccgaaaaacccaagaacaccctttctgat
cttcaaggcatgaacactctaatgaaaaaatcaacagttagtttgggtat
ttgtttacaaggcagatgaattaaatacctatctcatatttttagatatt
aggtatatagcctggtagccggtggaatttttctgccccagggtggaggg
ctaggatatagaatttgtgccaacccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59829848_59830992
seq2: B6Ng01-135M16.b_49_1162 (reverse)

seq1  AATGCGGGCCCTCGAGCTTGTGGGACAAATGCTTTATCCATTGACCAATC  50
      ||||| || ||||||||   |||||||||||| |||||   ||| |||||
seq2  AATGC-GGACCTCGAGC---TGGGACAAATGC-TTATC--ATGA-CAATC  42

seq1  TCTCAGGCCACCACCCCCAGATTTTTATTTTTATTTATTTATCTTGTTTT  100
      | ||||     ||| | ||||||| | || |||      |||||   |||
seq2  TTTCAG-----CACACGCAGATTTATTTTATTA------TATCT--GTTT  79

seq1  TCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCAATCTG  150
      ||||||||||| |||||||||||| | |||||||||| |||||| |||||
seq2  TCAAGACAGGG-TTCTCTGTGTAG-CATGGCTGTCCT-GAACTC-ATCTG  125

seq1  TAGACCAGACTTTTCTTGAACTCAGATAGCTCCACCTGCCTCTGCCTCCT  200
      ||||||||||||||| |||||||||||||||||| ||||||||||   ||
seq2  TAGACCAGACTTTTC-TGAACTCAGATAGCTCCA-CTGCCTCTGC--TCT  171

seq1  GAGGGAGGGGATTAAAGTTGTGAGCTACCATGCCCGGCCCCGTCTCCAGA  250
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGGGAAGGGATTAAAGTTGTGAGCTACCATGCCCGG-CCCGTCTCCAGA  220

seq1  TTTTTAAAGGGCAGTTTCTGACATTGTTGAGTACTAACAAACCAGCTAAT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGGGCAGTTTCTGACATTGTTGAGTACTAACAAACCAGCTAAT  270

seq1  GGCAACGATACAGCGGCGGCGGCAGCAGCCACCTGCTGCATTTACTGTAT  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCAACGATACAGCGGCGGCGGCAGCAGCCA-CTGCTGCATTTACTGTAT  319

seq1  GCTAGGCTATGCACTCATTCCCTGAGGCACGGAGATTTGTTTTGCTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTATGCACTCATTCCCTGAGGCACGGAGATTTGTTTTGCTCACA  369

seq1  GATGTAGCTCACATGCTTAAGTGAGCACATCGTAGGTACACATTGAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGCTCACATGCTTAAGTGAGCACATCGTAGGTACACATTGAATCT  419

seq1  TGTTGGCTGAGCAAGGTGCTTAAGGGAGCACACAGTAGGTGCACACTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTGAGCAAGGTGCTTAAGGGAGCACACAGTAGGTGCACACTCAA  469

seq1  CCTTCTTGGCTGACCAAGGTGAGCACGCAGAAAGGGTGCCTGAATGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGGCTGACCAAGGTGAGCACGCAGAAAGGGTGCCTGAATGATAT  519

seq1  ACCAAGAACATAGCAGCTTTTCCTGGTCACAGCAGGCAGCTAGTAGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAACATAGCAGCTTTTCCTGGTCACAGCAGGCAGCTAGTAGCATA  569

seq1  GCCAGATTCAAAGCTGTCTTCTAACCCCTCTGCTAATTGCCTCTTCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTCAAAGCTGTCTTCTAACCCCTCTGCTAATTGCCTCTTCCAGG  619

seq1  AACAGACAGATGTACCCAGCTCTGGCTACGTACCTGACTCCAGCTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGATGTACCCAGCTCTGGCTACGTACCTGACTCCAGCTGCCAG  669

seq1  TGAACCACTCCACCTTGCCTGTGCAGGGCCCATTGTCACACGGCGTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACTCCACCTTGCCTGTGCAGGGCCCATTGTCACACGGCGTAGCC  719

seq1  TCCACTGGCCTGTTGTTCCCACAGCCTTCCAACGGCAGGCTGCTGACGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGCCTGTTGTTCCCACAGCCTTCCAACGGCAGGCTGCTGACGTG  769

seq1  GTTGGTCATGCACACCACTGAACGTGTCCTCACTCCTGCCCCACACTCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCATGCACACCACTGAACGTGTCCTCACTCCTGCCCCACACTCCG  819

seq1  CTGAGCACTGTGAGACAGAAGGAAGGCACATTAGTGGGGGCCCATGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACTGTGAGACAGAAGGAAGGCACATTAGTGGGGGCCCATGCAGG  869

seq1  TTCTGGGGATCCTTCCAAATGATGCCAAGGGCTCACTGACCTCTGGCGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGATCCTTCCAAATGATGCCAAGGGCTCACTGACCTCTGGCGCT  919

seq1  TTCTTCTATACATAGCTGACAACCTTTTCTCACTCAGTACACTCTCTAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTATACATAGCTGACAACCTTTTCTCACTCAGTACACTCTCTAGG  969

seq1  ATGGGAGTCTCCTCATCTATTACTTTTGTCTTCTAGGGTTTTAGTTACTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTCTCCTCATCTATTACTTTTGTCTTCTAGGGTTTTAGTTACTC  1019

seq1  ACAGACACATGTTTGTACGTGTTACGTGGGAAACTCTAGAAACAAACAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACATGTTTGTACGTGTTACGTGGGAAACTCTAGAAACAAACAAT  1069

seq1  TCATCCATTTTAAGTGGTCCTGACTATCCCATTCTTCAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATTTTAAGTGGTCCTGACTATCCCATTCTTCAAGAATTC  1114

seq1: chr9_59689954_59691082
seq2: B6Ng01-135M16.g_68_1195

seq1  GAATTCCAGGAAAGGGGACCAGGAACCAAGGAACATTAGTTTCTTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAAGGGGACCAGGAACCAAGGAACATTAGTTTCTTGAAAA  50

seq1  TATATTTTATAGTCATGAGCTGGGTATCATTTCACTGATTTGACCCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTATAGTCATGAGCTGGGTATCATTTCACTGATTTGACCCTGTT  100

seq1  TTCTTTTAGTGATGTTTTATAATTCTCAATGTAGACATCTTTACTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAGTGATGTTTTATAATTCTCAATGTAGACATCTTTACTTATTC  150

seq1  CATTAAGTTTATATTATTTTGATTTTATGAATGGAATTACTAGTCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTTTATATTATTTTGATTTTATGAATGGAATTACTAGTCTTTGA  200

seq1  TCATTTGTATAGAAATAGAGTTGATTACTCCATATCAATTTAATTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTATAGAAATAGAGTTGATTACTCCATATCAATTTAATTTCTTT  250

seq1  TATTTTTACTGAATGTATTAGCTATAAAAGGTTTTGTAGATTCTCTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACTGAATGTATTAGCTATAAAAGGTTTTGTAGATTCTCTTTAG  300

seq1  GACTGTCTCTGTGTGATTGGGCCATTTTTCATAAAGTCTTCTGTAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTCTGTGTGATTGGGCCATTTTTCATAAAGTCTTCTGTAAAGAT  350

seq1  GCTTGATTTATTTTTCCCAATGGATCTTAAATGTTTATATGCATATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTTATTTTTCCCAATGGATCTTAAATGTTTATATGCATATATAC  400

seq1  ATTATGAAATTGATGACCTTATATTTACTGAGTCTGTAAGAAAAATCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAATTGATGACCTTATATTTACTGAGTCTGTAAGAAAAATCGGT  450

seq1  TTTAAAATATTATTTTTAATATTTCAAATATCCATAAGGAAAAAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATTATTTTTAATATTTCAAATATCCATAAGGAAAAAACATTC  500

seq1  TTTGGTTTTCAGTCTTTATTTGTAAGATAAATAGATCTCTAAAGTATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTCAGTCTTTATTTGTAAGATAAATAGATCTCTAAAGTATATG  550

seq1  CTACATCTCAGCAGTGTATTTGTTGCCAAAAGGTGATACAAAGGGGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTCAGCAGTGTATTTGTTGCCAAAAGGTGATACAAAGGGGTCAT  600

seq1  GTTCATTATGTTTTGGTGTCAAAATAGATGAATTTTATATATATTTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTATGTTTTGGTGTCAAAATAGATGAATTTTATATATATTTAGCT  650

seq1  TTTGGCCTGCTTAC-TTTTATATTTCCTAGTGGTAATGCTTAAATGAAGT  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTGCTTACTTTTTATATTTCCTAGTGGTAATGCTTAAATGAAGT  700

seq1  AAATAAGAATTTTCTGTTGAATTTCCTTTTTGGCTTCACTTAATCAAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAATTTTCTGTTGAATTTCCTTTTTGGCTTCACTTAATCAAGTG  750

seq1  CTGGTGATAGTTACAGAACTTTTCTTAGTATCTGACATTTATCAAATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATAGTTACAGAACTTTTCTTAGTATCTGACATTTATCAAATGTT  800

seq1  TAAAACTTAGTTTATTAATTCTATAGAATTTTTTTCTTTAGTATTTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAGTTTATTAATTCTATAGAATTTTTTTCTTTAGTATTTTGAA  850

seq1  AGTGCACTAATTTGTTTCCATTATCTATGTTTTTTTTTGTTTGTTTGTTT  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTAATTTGTTTCCATTATCTATGTTTTTTTTTGTTTGTTTGTTT  900

seq1  TTTGTTGTTGTTGTTAGGTATAACCCGAAAAAACCCAAGAACACCCCTTT  949
      |||| |||   || ||||||| ||||| ||||||||||||||| ||||||
seq2  TTTG-TGT--GTGGTAGGTATTACCCG-AAAAACCCAAGAACA-CCCTTT  945

seq1  CTGATCTTCAAGGCATGAACACTCTAAATGAAAAAAATCAACAGTAAGTT  999
      ||||||||||||||||||||||||| |||| |||||||||||||| ||||
seq2  CTGATCTTCAAGGCATGAACACTCT-AATG-AAAAAATCAACAGTTAGTT  993

seq1  T-GGTATATGTTTACAAGGCAAGATGAAATAAATAACTATCTCATATTTT  1048
      | ||||| |||||||||||| ||||||| |||||| ||||||||||||||
seq2  TGGGTATTTGTTTACAAGGC-AGATGAATTAAATACCTATCTCATATTTT  1042

seq1  TAGATATTA-GTATATAGCCTGGTAGCCTGTG--ATTTTTCTGCCTCAGG  1095
      ||||||||| |||||||||||||||||| |||  ||||||||||| ||||
seq2  TAGATATTAGGTATATAGCCTGGTAGCCGGTGGAATTTTTCTGCCCCAGG  1092

seq1  CT-GAGTGCTAGGATTATAG-ATATGTG-CAACCCAC  1129
       | ||| ||||||| ||||| || |||| ||||||||
seq2  GTGGAGGGCTAGGA-TATAGAATTTGTGCCAACCCAC  1128