BAC Information

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BAC

Clone NameB6Ng01-135P08
Chromosome9 (Build37)
Map Location 109,554,306 - 109,720,385
singlet/doubletdoublet
Overlap geneE330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8
Upstream geneENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106
Downstream gene3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P08.bB6Ng01-135P08.g
ACCDH935866DH935867
length1,072759
definitionDH935866|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P08, 5' end.DH935867|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,719,316 - 109,720,385)(109,554,306 - 109,555,063)
sequence
gaattcactctgtagatcaggctggtctcaagctcaaattcacagagatc
cacctgcccctgcctctgaaatgttgggattaaaggtgtggacaaccatg
tctgacatctacacactcttaatgtactttcttcttgagtcatttatgaa
aatatctattgatatttggcatgggtcatgctatcactgtatctcctacc
attggtgtgtcctactgtgagtctggggacattactgccatataagttat
ctagcttagtttgcagcacacagtaaatatttcttggatatgtaataagc
taattctgtgccctgggaaacccattatggtattaaaaatcttgggagca
atatagatgacgtcttacagtaatttaagctgttactaagcaaacgttct
ctcagaattgagaaaaataattcctattgatgactaatgttctgtttcag
acaaggcatctggcaaatgggccacacaggtagctgccactgatgtggca
aatgctgagaagaaagtctaaatgggaaagaatgtgtggggcagggcccg
acagcctctacagttaactgtggatgctgcatttgctaaacactgtcatt
cattagccagaagaataagagtctcctacagagcctactgaagttctttt
tgtgcttgagatatgtacagatatgaagtgtaggaatgagtgcttcctag
gtgtcttgataaactggtcttttggaaaaccagtggttctggattggaaa
ggctggaatccagctcccagttttgataccagtgacaatatgtgaatctt
ttctttctctggatttctgcttcatttgtaaatgagttaaggatcaaata
aatcaaagtggtgactggggatatggctaaatggtacaatgcttaggcat
aatgcacaaggtattcattctctagcactatgaatgagtgaacaaacgaa
tgaattctattggcatggcatttataccactatatccccatcgattagat
tatattgcagaaaatgttggatagagccagaagtttgttaactcacactg
caagggaaagtccacactgagc
gaattctgatgtcctcagtaggctgctcatgtaaaacacctgcagagagt
attattgcccaggggagtcaatgaagagtaaatctctgcagcctggcaca
tgcacactccacatgaggggctttcaaaataaacccaggagtggccacat
ctgttcttcacccaggacagagtggagcatctcaccatcttcctgcccct
cccatcacattcagagacaaaatggagtgcctgactcaggtcaaaaggca
catcggtcatcctactgcaatggacacatccagcagagcttggttaagta
cattttccctgtgcagaggaccagtccagggctatcctggactaatttta
aaaattggcattgagactgtcatagaggaacccaggctgctttgaaatta
tatcaatgtataaacctaaatgaatatgcttgggccctgaggagtacttg
ggctctgagcagaccatctctcacctaagaaccaggcaccagagagctgg
cacttaagagagaagacagtatataaagcattagattatggtagcactta
gttgaaatttgacatggcatgtcagccagtaatagaaaattgctttgagt
tcagggccagcaaaggtgtctggggactgttatttcacctgccttcgtcc
tttggccgagccacatttcaagaatacttcacaccaggcagtggtggcac
acgccttttaatcccagcacttgggaggcagaggcaggcggatttctgag
tttgatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109719316_109720385
seq2: B6Ng01-135P08.b_48_1119 (reverse)

seq1  GCTCAGTGTGGAC-TTCCCTTGCAGTTGGTGAGTTA--CAACTTCTTGCT  47
      ||||||||||||| ||||||||||||  ||||||||   ||||||| |||
seq2  GCTCAGTGTGGACTTTCCCTTGCAGT--GTGAGTTAACAAACTTCTGGCT  48

seq1  CTATCC-ACATTTTCTGCAATAT-ATCTAATCGATGGGGATATTAGTGGT  95
      |||||| |||||||||||||||| |||||||||||||||||| |||||||
seq2  CTATCCAACATTTTCTGCAATATAATCTAATCGATGGGGATA-TAGTGGT  97

seq1  ATAAATGCCATGCCATTAG-ATTCATTCGTTTGTTCACTCATTCATAGTG  144
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  ATAAATGCCATGCCAATAGAATTCATTCGTTTGTTCACTCATTCATAGTG  147

seq1  CTAGAGATTGAATACCTTGTGCATATTGCCTAAGCATTGTACCATTTAGC  194
      ||||||| ||||||||||||||||  ||||||||||||||||||||||||
seq2  CTAGAGAATGAATACCTTGTGCATTATGCCTAAGCATTGTACCATTTAGC  197

seq1  CATATCCCCAGTCACCACTTTGATTTATTTGATCCTTAACTCATTTTACA  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATATCCCCAGTCACCACTTTGATTTATTTGATCCTTAACTCA-TTTACA  246

seq1  AATGAAGCAGAAATCCAGAGAAAGAAAAGATTCACATATTGTCACTGGTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCAGAAATCCAGAGAAAGAAAAGATTCACATATTGTCACTGGTA  296

seq1  TCAAAACTGGGAGCTGGATTCCAGCCTTTCCAATCCAGAACCACTGGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTGGGAGCTGGATTCCAGCCTTTCCAATCCAGAACCACTGGTTT  346

seq1  TCCAAAAGACCAGTTTATCAAGACACCTAGGAAGCACTCATTCCTACACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGACCAGTTTATCAAGACACCTAGGAAGCACTCATTCCTACACT  396

seq1  TCATATCTGTACATATCTCAAGCACAAAAAGAACTTCAGTAGGCTCTGTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTGTACATATCTCAAGCACAAAAAGAACTTCAGTAGGCTCTGTA  446

seq1  GGAGACTCTTATTCTTCTGGCTAATGAATGACAGTGTTTAGCAAATGCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCTTATTCTTCTGGCTAATGAATGACAGTGTTTAGCAAATGCAG  496

seq1  CATCCACAGTTAACTGTAGAGGCTGTCGGGCCCTGCCCCACACATTCTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAGTTAACTGTAGAGGCTGTCGGGCCCTGCCCCACACATTCTTT  546

seq1  CCCATTTAGACTTTCTTCTCAGCATTTGCCACATCAGTGGCAGCTACCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAGACTTTCTTCTCAGCATTTGCCACATCAGTGGCAGCTACCTG  596

seq1  TGTGGCCCATTTGCCAGATGCCTTGTCTGAAACAGAACATTAGTCATCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCATTTGCCAGATGCCTTGTCTGAAACAGAACATTAGTCATCAA  646

seq1  TAGGAATTATTTTTCTCAATTCTGAGAGAACGTTTGCTTAGTAACAGCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTATTTTTCTCAATTCTGAGAGAACGTTTGCTTAGTAACAGCTT  696

seq1  AAATTACTGTAAGACGTCATCTATATTGCTCCCAAGATTTTTAATACCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTGTAAGACGTCATCTATATTGCTCCCAAGATTTTTAATACCAT  746

seq1  AATGGGTTTCCCAGGGCACAGAATTAGCTTATTACATATCCAAGAAATAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTTCCCAGGGCACAGAATTAGCTTATTACATATCCAAGAAATAT  796

seq1  TTACTGTGTGCTGCAAACTAAGCTAGATAACTTATATGGCAGTAATGTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTGCTGCAAACTAAGCTAGATAACTTATATGGCAGTAATGTCC  846

seq1  CCAGACTCACAGTAGGACACACCAATGGTAGGAGATACAGTGATAGCATG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCACAGTAGGACACACCAATGGTAGGAGATACAGTGATAGCATG  896

seq1  ACCCATGCCAAATATCAATAGATATTTTCATAAATGACTCAAGAAGAAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCCAAATATCAATAGATATTTTCATAAATGACTCAAGAAGAAAG  946

seq1  TACATTAAGAGTGTGTAGATGTCAGACATGGTTGTCCACACCTTTAATCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAGAGTGTGTAGATGTCAGACATGGTTGTCCACACCTTTAATCC  996

seq1  CAACATTTCAGAGGCAGGGGCAGGTGGATCTCTGTGAATTTGAGCTTGAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTCAGAGGCAGGGGCAGGTGGATCTCTGTGAATTTGAGCTTGAG  1046

seq1  ACCAGCCTGATCTACAGAGTGAATTC  1070
      ||||||||||||||||||||||||||
seq2  ACCAGCCTGATCTACAGAGTGAATTC  1072

seq1: chr9_109554306_109555063
seq2: B6Ng01-135P08.g_72_830

seq1  GAATTCTGATGTCCTCAGTAGGCTGCTCATGTAAAACACCTGCAGAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGTCCTCAGTAGGCTGCTCATGTAAAACACCTGCAGAGAGT  50

seq1  ATTATTGCCCAGGGGAGTCAATGAAGAGTAAATCTCTGCAGCCTGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCCCAGGGGAGTCAATGAAGAGTAAATCTCTGCAGCCTGGCACA  100

seq1  TGCACACTCCACATGAGGGGCTTTCAAAATAAACCCAGGAGTGGCCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTCCACATGAGGGGCTTTCAAAATAAACCCAGGAGTGGCCACAT  150

seq1  CTGTTCTTCACCCAGGACAGAGTGGAGCATCTCACCATCTTCCTGCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCACCCAGGACAGAGTGGAGCATCTCACCATCTTCCTGCCCCT  200

seq1  CCCATCACATTCAGAGACAAAATGGAGTGCCTGACTCAGGTCAAAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCACATTCAGAGACAAAATGGAGTGCCTGACTCAGGTCAAAAGGCA  250

seq1  CATCGGTCATCCTACTGCAATGGACACATCCAGCAGAGCTTGGTTAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGTCATCCTACTGCAATGGACACATCCAGCAGAGCTTGGTTAAGTA  300

seq1  CATTTTCCCTGTGCAGAGGACCAGTCCAGGGCTATCCTGGACTAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCTGTGCAGAGGACCAGTCCAGGGCTATCCTGGACTAATTTTA  350

seq1  AAAATTGGCATTGAGACTGTCATAGAGGAACCCAGGCTGCTTTGAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGCATTGAGACTGTCATAGAGGAACCCAGGCTGCTTTGAAATTA  400

seq1  TATCAATGTATAAACCTAAATGAATATGCTTGGGCCCTGAGGAGTACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGTATAAACCTAAATGAATATGCTTGGGCCCTGAGGAGTACTTG  450

seq1  GGCTCTGAGCAGACCATCTCTCACCTAAGAACCAGGCACCAGAGAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGCAGACCATCTCTCACCTAAGAACCAGGCACCAGAGAGCTGG  500

seq1  CACTTAAGAGAGAAGACAGTATATAAAGCATTAGATTATGGTAGCACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGAGAGAAGACAGTATATAAAGCATTAGATTATGGTAGCACTTA  550

seq1  GTTGAAATTTGACATGGCATGTCAGCCAGTAATAGAAAATTGCTTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATTTGACATGGCATGTCAGCCAGTAATAGAAAATTGCTTTGAGT  600

seq1  TCAGGGCCAGCAAAGGTGTCTGGGGACTGTTATTTCACCTGCCTTCGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCAGCAAAGGTGTCTGGGGACTGTTATTTCACCTGCCTTCGTCC  650

seq1  TTTGGCCGAGCCACATTTCAAGAATACTTCACACCAGGCAGTGGTGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCGAGCCACATTTCAAGAATACTTCACACCAGGCAGTGGTGGCAC  700

seq1  ACGCC-TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG  750

seq1  TTTGAGGCC  758
      ||||| |||
seq2  TTTGATGCC  759