BAC Information

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BAC

Clone NameB6Ng01-136I14
Chromosome9 (Build37)
Map Location 88,261,463 - 88,317,663
singlet/doubletdoublet
Overlap geneNt5e, Snx14, LOC100039601
Upstream geneLOC671706, Tbx18, LOC671731, LOC100039580, LOC384962, EG272633
Downstream geneSyncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136I14.bB6Ng01-136I14.g
ACCDH936284DH936285
length1,0581,096
definitionDH936284|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I14, 5' end.DH936285|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,261,463 - 88,262,522)(88,316,560 - 88,317,663)
sequence
gaattctcatatatagtcacacagatgcaggcaccaagcttagtcaaacc
caagctttctctaaatttctggcttgcaaagctattgtttctgttttata
aaaagtattggacatttttacttctgtaataagaaagatcaatgcattaa
ttttctatgctgaagacacactttatatatctacatatccgaggtcctat
tatacattaaaacaaatccactggacagatactgaagttcttctgcaatc
ttccctaacatactgtcaaacccctttagtataggactccaagatcattt
tagacaatagggcaggtggctagaacacactgcctgtgtagaattacgta
atgtttaaccaagcactgaagattcagcccaaaccaggcaatctgaagct
gaggacagtggacttggtcctttgcgagctcaacccccttgcccagtagt
gaacagcagggcagaagctttcaatgtgctccctcccaaaactaaacaca
ggcgctgtgacttccctcccctctttcttccctcagcccaaagggtctct
gggtatgcgtattcttaggcttttttcccttcctgcttcacttctaacca
cctaaggtaccatcacctgggagaacctggctgctgtgctgccctttgga
gggacatttgacctcgtccaattaaaagggtccaccctgaagaaggcttt
tgagcacagcgtgcatcgctatggccagtccaccggagagttcctgcaag
tgggtggtaagtgacacatcttgtggggcacattgttcacccctctaccg
ctgggctgctttggattttctcccagtcaaccccatctttcaatgacaac
tgactcctggagtcactgaggttagattgaggtcaaaggtccaaggctct
ggaaatgagtagtatttggccaaccttcatttggacatcagaaaaggtat
ctatccatgggagcgacctactaaacactagtcagataggctgacatgga
gtctttctgcagaatctacttgtgggtggatgcagaaacatctttggttg
tttttttt
gaattcactctgtagaccaggctggcctcaaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattacaggcatgcgccaccactgcccagct
gtgtttttaaattttgaacttagacatttttaaatatatgtgtataggtg
tatgtctatgtgagcatatcttgcagaatgcagtacccctggaggcctga
agggagcagtagatcccctggagctggtggtacaggcagttgtgataccc
acactgggtgctgagacctgatcttcagtccctaggaaaagcagccggca
tacttactcccgaactctctctccagccctgtgatttttatttttaaaag
tcagtttatgtgactctatgctagttaaaatttattactaaaagcattgt
aaagcagagattttaaaaatctacttactgtcattttataatggactata
tgaaaaaatttaaaatgagcattatgtgtatttacctatatttgcctgta
taaatacacaggcacatattataattttattttattttttagtgctgagg
gttgaacccaggcccttgcatgtaatctcccaccgagctgcacctgtagt
tctgcctttaaggtttacagttctaataacaattataaaaggataatacg
gtcccctcagaaagttgcagttcatcctgtgagcttgttgtcccttaggt
gcgtggtccacaaaggccattaatctagaacagaggttgtcaaagctgcc
tggagaagagaccctccttgggaatcaccaacagtatggattgttggact
taggcccagattttgatgagaaagttctaggctactgccctgtaaatagt
attgttaaaaactttcccgggtagttctgcagcagagacatgaaaagggt
ccctgggtaaatagtaatccatcggctgttgctttcatgtgcaggctgca
gtgagtggcccatgctgagggttgacccagagccggtgcctgacttagca
agtgcttctaatcctggagctaacccaccttccactccggaaagctctta
atgcatatgtgtaacatagattcaaactcattagcattgtttaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88261463_88262522
seq2: B6Ng01-136I14.b_47_1104

seq1  GAATTCTCATATATAGTCACACAGATGCAGGCACCAAGCTTAGTCAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATATAGTCACACAGATGCAGGCACCAAGCTTAGTCAAACC  50

seq1  CAAGCTTTCTCTAAATTTCTGGCTTGCAAAGCTATTGTTTCTGTTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTCTCTAAATTTCTGGCTTGCAAAGCTATTGTTTCTGTTTTATA  100

seq1  AAAAGTATTGGACATTTTTACTTCTGTAATAAGAAAGATCAATGCATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATTGGACATTTTTACTTCTGTAATAAGAAAGATCAATGCATTAA  150

seq1  TTTTCTATGCTGAAGACACACTTTATATATCTACATATCCGAGGTCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATGCTGAAGACACACTTTATATATCTACATATCCGAGGTCCTAT  200

seq1  TATACATTAAAACAAATCCACTGGACAGATACTGAAGTTCTTCTGCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTAAAACAAATCCACTGGACAGATACTGAAGTTCTTCTGCAATC  250

seq1  TTCCCTAACATACTGTCAAACCCCTTTAGTATAGGACTCCAAGATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAACATACTGTCAAACCCCTTTAGTATAGGACTCCAAGATCATTT  300

seq1  TAGACAATAGGGCAGGTGGCTAGAACACACTGCCTGTGTAGAATTACGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATAGGGCAGGTGGCTAGAACACACTGCCTGTGTAGAATTACGTA  350

seq1  ATGTTTAACCAAGCACTGAAGATTCAGCCCAAACCAGGCAATCTGAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAACCAAGCACTGAAGATTCAGCCCAAACCAGGCAATCTGAAGCT  400

seq1  GAGGACAGTGGACTTGGTCCTTTGCGAGCTCAACCCCCTTGCCCAGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGTGGACTTGGTCCTTTGCGAGCTCAACCCCCTTGCCCAGTAGT  450

seq1  GAACAGCAGGGCAGAAGCTTTCAATGTGCTCCCTCCCAAAACTAAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGGGCAGAAGCTTTCAATGTGCTCCCTCCCAAAACTAAACACA  500

seq1  GGCGCTGTGACTTCCCTCCCCTCTTTCTTCCCTCAGCCCAAAGGGTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGTGACTTCCCTCCCCTCTTTCTTCCCTCAGCCCAAAGGGTCTCT  550

seq1  GGGTATGCGTATTCTTAGGCTTTTTTCCCTTCCTGCTTCACTTCTAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGCGTATTCTTAGGCTTTTTTCCCTTCCTGCTTCACTTCTAACCA  600

seq1  CCTAAGGTACCATCACCTGGGAGAACCTGGCTGCTGTGCTGCCCTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTACCATCACCTGGGAGAACCTGGCTGCTGTGCTGCCCTTTGGA  650

seq1  GGGACATTTGACCTCGTCCAATTAAAAGGGTCCACCCTGAAGAAGGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTTGACCTCGTCCAATTAAAAGGGTCCACCCTGAAGAAGGCTTT  700

seq1  TGAGCACAGCGTGCATCGCTATGGCCAGTCCACCGGAGAGTTCCTGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGCGTGCATCGCTATGGCCAGTCCACCGGAGAGTTCCTGCAAG  750

seq1  TGGGTGGTAAGTGACACATCTTGTGGGGCACATTGTTCACCCCTCTACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTAAGTGACACATCTTGTGGGGCACATTGTTCACCCCTCTACCG  800

seq1  CTGGGCTGCTTTGGATTTTCTCCCAGTCAACCCCATCTTTCAATGACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGCTTTGGATTTTCTCCCAGTCAACCCCATCTTTCAATGACAAC  850

seq1  TGACTCCTGGAGTCACTGAGGTTAGATTGAGGTCAAAGGTCCAAGGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTGGAGTCACTGAGGTTAGATTGAGGTCAAAGGTCCAAGGCTCT  900

seq1  GGAAATGAGTAGTATTT-GCCAACCTTCATTTGGACATCAGAAAAGGTAT  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAAATGAGTAGTATTTGGCCAACCTTCATTTGGACATCAGAAAAGGTAT  950

seq1  CTATCCATGGGAGGCGACCTACTAAACACTAGTCAGATAGGCTGACATGA  999
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  CTATCCATGGGA-GCGACCTACTAAACACTAGTCAGATAGGCTGACATGG  999

seq1  GGTCTTTCTGCAGAAATCTTACTTGTGGGTGGATGCAAGAAACATTCTTT  1049
       |||||||||||| |||| ||||||||||||||||| ||||||| |||||
seq2  AGTCTTTCTGCAG-AATC-TACTTGTGGGTGGATGC-AGAAACA-TCTTT  1045

seq1  --TTGTTTGTTTT  1060
        |||||| ||||
seq2  GGTTGTTTTTTTT  1058

seq1: chr9_88316560_88317663
seq2: B6Ng01-136I14.g_70_1165 (reverse)

seq1  AGTTAAACAAATTGCCTAATGAGTTTTGATTTCTATGGTACACATATGCA  50
      ||||||||||  || |||||||||||  |  |||||| ||||||||||||
seq2  AGTTAAACAA--TG-CTAATGAGTTTGAA--TCTATGTTACACATATGCA  45

seq1  TTTAAGAGCTTTCCGGAGTGGGAGGGTTGGGGTTAGCT-CAGGGATAG-A  98
       |||||||||||||||||||| |||    ||||||||| ||||  ||| |
seq2  -TTAAGAGCTTTCCGGAGTGGAAGG---TGGGTTAGCTCCAGGATTAGAA  91

seq1  GCACTTGCTAAGTCAGGCACCGGCTCTGGGTTCAACCCTCAGCATGTGGC  148
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GCACTTGCTAAGTCAGGCACCGGCTCTGGG-TCAACCCTCAGCATG-GGC  139

seq1  CACTCACCTGCAGCCTGCACATGAAAGCAACAG-CGATGGATTACTATTT  197
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  CACTCA-CTGCAGCCTGCACATGAAAGCAACAGCCGATGGATTACTATTT  188

seq1  AACCAGGGACCCTTTTCATGTCTCTGCTGCAGAACTACCC-GGAAAGTTT  246
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCCAGGGACCCTTTTCATGTCTCTGCTGCAGAACTACCCGGGAAAGTTT  238

seq1  TTAACAATACTATTTACAGGGCAGTAGCCTAGAACTTTCTCATCAAAATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATACTATTTACAGGGCAGTAGCCTAGAACTTTCTCATCAAAATC  288

seq1  TGGGCCTAAGTCCAACAATCCATACTGTTGGTGATTCCCAAGGAGGGTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTAAGTCCAACAATCCATACTGTTGGTGATTCCCAAGGAGGGTCT  338

seq1  CTTCTCCAGGCAGCTTTGACAACCTCTGTTCTAGATTAATGGCCTTTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAGGCAGCTTTGACAACCTCTGTTCTAGATTAATGGCCTTTGTG  388

seq1  GACCACGCACCTAAGGGACAACAAGCTCACAGGATGAACTGCAACTTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGCACCTAAGGGACAACAAGCTCACAGGATGAACTGCAACTTTCT  438

seq1  GAGGGGACCGTATTATCCTTTTATAATTGTTATTAGAACTGTAAACCTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACCGTATTATCCTTTTATAATTGTTATTAGAACTGTAAACCTTA  488

seq1  AAGGCAGAACTACAGGTGCAGCTCGGTGGGAGATTACATGCAAGGGCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAACTACAGGTGCAGCTCGGTGGGAGATTACATGCAAGGGCCTG  538

seq1  GGTTCAACCCTCAGCACTAAAAAATAAAATAAAATTATAATATGTGCCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAACCCTCAGCACTAAAAAATAAAATAAAATTATAATATGTGCCTG  588

seq1  TGTATTTATACAGGCAAATATAGGTAAATACACATAATGCTCATTTTAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATACAGGCAAATATAGGTAAATACACATAATGCTCATTTTAAA  638

seq1  TTTTTTCATATAGTCCATTATAAAATGACAGTAAGTAGATTTTTAAAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATATAGTCCATTATAAAATGACAGTAAGTAGATTTTTAAAATC  688

seq1  TCTGCTTTACAATGCTTTTAGTAATAAATTTTAACTAGCATAGAGTCACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTACAATGCTTTTAGTAATAAATTTTAACTAGCATAGAGTCACA  738

seq1  TAAACTGACTTTTAAAAATAAAAATCACAGGGCTGGAGAGAGAGTTCGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGACTTTTAAAAATAAAAATCACAGGGCTGGAGAGAGAGTTCGGG  788

seq1  AGTAAGTATGCCGGCTGCTTTTCCTAGGGACTGAAGATCAGGTCTCAGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATGCCGGCTGCTTTTCCTAGGGACTGAAGATCAGGTCTCAGCA  838

seq1  CCCAGTGTGGGTATCACAACTGCCTGTACCACCAGCTCCAGGGGATCTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGGGTATCACAACTGCCTGTACCACCAGCTCCAGGGGATCTAC  888

seq1  TGCTCCCTTCAGGCCTCCAGGGGTACTGCATTCTGCAAGATATGCTCACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTTCAGGCCTCCAGGGGTACTGCATTCTGCAAGATATGCTCACA  938

seq1  TAGACATACACCTATACACATATATTTAAAAATGTCTAAGTTCAAAATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATACACCTATACACATATATTTAAAAATGTCTAAGTTCAAAATTT  988

seq1  AAAAACACAGCTGGGCAGTGGTGGCGCATGCCTGTAATCCCAGCACTTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACAGCTGGGCAGTGGTGGCGCATGCCTGTAATCCCAGCACTTGG  1038

seq1  GAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGA  1088

seq1  GTGAATTC  1104
      ||||||||
seq2  GTGAATTC  1096