BAC Information

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BAC

Clone NameB6Ng01-136L03
Chromosome9 (Build37)
Map Location 22,029,395 - 22,194,824
singlet/doubletdoublet
Overlap geneZfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln
Upstream geneKeap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik
Downstream gene9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L03.bB6Ng01-136L03.g
ACCDH936402DH936403
length1,135795
definitionDH936402|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L03, 5' end.DH936403|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,193,449 - 22,194,824)(22,029,395 - 22,030,170)
sequence
gaattcttagaagttgctcttgaagaagttcttattccatgccccaaatt
cagtttattacaatctatacatttttaaattctttattacttagaaaaac
atcattaatttatttcctgtgtgtgtgtgtgccggtcaaaggacaatttg
ctggaactggttctgggtctagaattcaggtcccaagacttggtagcaag
cgccctcatatctaggatgtgctctgtcgctggccccaagcttcctattt
ttatttagctttgattctggacttgacccttcaacactttcagtttttct
gttcaataagcacagttgatcctgttatggactcatttaggacacataga
ctcaaccataaaccttgctaccatacatctgttttacacaatctcgtaag
gactttagctctcacagcaccaacctaggcacagagattttggtgctttg
tcgaccttttgacgtataaaggcaaacagttctactaccagaggtttggc
aacccatctttttagacacattcttggaaagcctagcagaatgtcaaatg
gtaagacactgtgagggtctccaaaagaccctcccaggaagaggaaaagg
aaagtcagattaaaagttactcgtgcaatagtttgtcctgctttctgcct
gttaaacgggaacttttattaaatatggactttccgattgtaccttctct
caaagtgttctcactgctggctttgggtagttgactgggatttaaaaccg
aagggtctgttactgtcatctcttttccccaccaaacaaagaactagtca
ctggctgagagtgtggggacccgccagagtggtctctcacgaggtcaagc
tggctgtctagtcccacttctggtggcaggatcagcccaaaggccagagg
gccggaccgggttcgtaagcccacggagatgatgcaggcggcgggagctg
acagagtcagacggaccgctacgcgtgcgtgggtgcgtgcggatgcaggc
cttctcctagcagttcacagacgaacgtctccaccaagcgaggagagaca
agcgtgttcgcagcatccggacagtcccacttggccgcatcacttgacct
agtctcagggcgagcaagcggcgtcagccgtccac
gaattccacgacagtcagggctacacagagaaaccctgtctcgaaaaaaa
ccaaaaaaaaaaaaaaaaaaatgcttctcatgtaaagcccctgaggggct
ttacctgctggaagaccccaagtgagacaaaatctatgtttattttttct
ggtgcgcagggatcgatcttcagcagtctctcaagcaagagaaagggggc
gatcccggttctagcttacaagcaccgtatacgtttttttttttttttag
agggcatattacattttcagattctaagctcttggtgagggatggctaga
ccttttggctggttggctgggtgatatcgggtcatccttggggagtacct
tcgttccccagagggaccaagaaaccttcagccagcactttttttttttt
ttttttttttttttttttccgggaatgagttttgtcaaaatcggtctggg
tggggtcaaaattgcttaattttttcatttttccccaggtcagaaccccc
ctcccaccccccgggccatcaacacacaagaaaaaacactgagaccctcc
ccgagacccttccttatattcccagaaaaaaaacttcccgggaattaaaa
taaattattggaatacgctttttctgtccgatcaaactgtccttattatc
taaaagccttatgccctttgctacgcccccccttccgaatggattgggga
ctttgactgtcactccgccccctgtgacaggccccctctaaaatgaggaa
atggggtggatttaaaaattcagagaagtgttaacctccttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22193449_22194824
seq2: B6Ng01-136L03.b_42_1176 (reverse)

seq1  GTGGACGGCTAGACGGTGGGTCCGACGGTTCAAACTCAGGAAGAGGAAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTGAGTGCAGGCTCGGCGCAGCTCCTGGAGGAGGACTGCAGTCGAGGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGCGGGCGCTCTCACACCCAGTCGGCTCTGCCCTCCGCACCCACGGAGTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGTAGGCTACCACGGCCGTTCAAAATTTGAATTTCAGCGCCCCGGACGAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACGCATGCGCGCGGGGTGGGCGGGGCCGGGCGGGCCGCTTGCCCCCGCCC  250
                     |||| |||   | | |  ||||||||| |    ||
seq2  ---------------GTGGACGG---CTGAC--GCCGCTTGCTC---GCC  27

seq1  CTGAG-CTAGGTCACGTGATGCGGCCAAGTTGGGACTGGTCCGGA-GCTG  298
      ||||| |||||||| |||||||||||||| ||||||| ||||||| ||||
seq2  CTGAGACTAGGTCAAGTGATGCGGCCAAG-TGGGACT-GTCCGGATGCTG  75

seq1  CGAGCACTGCTCTCTCTCCTCCGCTTGGGTGGAGACGGTTCTGCCGTTGA  348
      ||| |||   | |||||||| ||||| ||||||||| |||| | |  |||
seq2  CGAACACGCTTGTCTCTCCT-CGCTT-GGTGGAGAC-GTTC-GTCTGTGA  121

seq1  ACTGCCTAGGGAGAGGGCCCTGCCATCCCGCACGCACCCACGCACGCCGT  398
      |||| ||| ||||| || |||| ||| ||||||||||||||||||| |||
seq2  ACTG-CTA-GGAGAAGG-CCTG-CAT-CCGCACGCACCCACGCACG-CGT  165

seq1  AGCGGGTCCCTTCCTGACTCTGTCAGCTCCCGCCGCCCTGCCTTCTTCCT  448
      ||| ||||| |  |||||||||||||||||||||| ||||| |  |  ||
seq2  AGC-GGTCCGT--CTGACTCTGTCAGCTCCCGCCG-CCTGCATCAT--CT  209

seq1  CCGTGGGCCTTACGAACCCGGTCCGGCCCTCTGGCCTTTGGGCCTGATCC  498
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  CCGTGGG-CTTACGAACCCGGTCCGGCCCTCTGGCCTTTGGG-CTGATCC  257

seq1  TGCCACCAGAAGTGGGACTAGACAGCCAGCTTGACCTCCTGAGAGACCAC  548
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCCACCAGAAGTGGGACTAGACAGCCAGCTTGACCTCGTGAGAGACCAC  307

seq1  TCTGGCGGGTCCCCACACTCTCAGCCAGTGACTAGTTCTTTGTTTGGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGGGTCCCCACACTCTCAGCCAGTGACTAGTTCTTTGTTTGGTGG  357

seq1  GGAAAAGAGATGACAGTAACAGACCCTTCGGTTTTAAATCCCAGTCAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGATGACAGTAACAGACCCTTCGGTTTTAAATCCCAGTCAACT  407

seq1  ACCCAAAGCCAGCAGTGAGAACACTTTGAGAGAAGGGACAATCGGAAAGT  698
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCCAAAGCCAGCAGTGAGAACACTTTGAGAGAAGGTACAATCGGAAAGT  457

seq1  CCATATTTAATAAAAGTTCCCGTTTAACAGGCAGAAAGCAGGACAAACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTAATAAAAGTTCCCGTTTAACAGGCAGAAAGCAGGACAAACTA  507

seq1  TTGCACGAGTAACTTTTAATCTGACTTTCCTTTTCCTCTTCCTGGGAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACGAGTAACTTTTAATCTGACTTTCCTTTTCCTCTTCCTGGGAGGG  557

seq1  TCTTTTGGAGACCCTCACAGTGTCTTACCATTTGACATTCTGCTAGGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGAGACCCTCACAGTGTCTTACCATTTGACATTCTGCTAGGCTT  607

seq1  TCCAAGAATGTGTCTAAAAAGATGGGTTGCCAAACCTCTGGTAGTAGAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAATGTGTCTAAAAAGATGGGTTGCCAAACCTCTGGTAGTAGAAC  657

seq1  TGTTTGCCTTTATACGTCAAAAGGTCGACAAAGCACCAAAATCTCTGTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTTATACGTCAAAAGGTCGACAAAGCACCAAAATCTCTGTGC  707

seq1  CTAGGTTGGTGCTGTGAGAGCTAAAGTCCTTACGAGATTGTGTAAAACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGGTGCTGTGAGAGCTAAAGTCCTTACGAGATTGTGTAAAACAG  757

seq1  ATGTATGGTAGCAAGGTTTATGGTTGAGTCTCTGTGTCCTAAATGAGTCC  1048
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTATGGTAGCAAGGTTTATGGTTGAGTCTATGTGTCCTAAATGAGTCC  807

seq1  ATAACAGGATCAACTGTGCTTATTGAACAGAAAAACTGAAAGTGTTGAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGGATCAACTGTGCTTATTGAACAGAAAAACTGAAAGTGTTGAAG  857

seq1  GGTCAAGTCCAGAATCAAAGCTAAATAAAAATAGGAAGCTTGGGGCCAGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGTCCAGAATCAAAGCTAAATAAAAATAGGAAGCTTGGGGCCAGC  907

seq1  GACAGAGCACATGCTAGCTATGAGGGCGCTTGCTACCAAGTCTTGGGACC  1198
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  GACAGAGCACATCCTAGATATGAGGGCGCTTGCTACCAAGTCTTGGGACC  957

seq1  TGAATTCTAGACCCAGAACCAGTTCCAGCAAATTGTCCTCTGACCTGCAC  1248
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TGAATTCTAGACCCAGAACCAGTTCCAGCAAATTGTCCTTTGACCGGCAC  1007

seq1  ACACACACACAGGAAATAAATTAATGATGTTTTTCTAAGTAATAAAGAAT  1298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGGAAATAAATTAATGATGTTTTTCTAAGTAATAAAGAAT  1057

seq1  TTAAAAATGTATAGATTGTAATAAACTGAATTTGGGGCATGGAATAAGAA  1348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGTATAGATTGTAATAAACTGAATTTGGGGCATGGAATAAGAA  1107

seq1  CTTCTTTAAGAGCAACTTCTAAGAATTC  1376
      |||||| |||||||||||||||||||||
seq2  CTTCTTCAAGAGCAACTTCTAAGAATTC  1135

seq1: chr9_22029395_22030170
seq2: B6Ng01-136L03.g_67_841

seq1  GAATTCCAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGACAGTCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAA  50

seq1  CCAAAAAAAAAAAAAAAAAAATGCTTCTCATGTAAAGCCCCAGAGGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAAAAAAAAAAAAAAAAAAATGCTTCTCATGTAAAGCCCCTGAGGGGCT  100

seq1  TTACCTGCTGGAAGACCCCAAGTGAGACAAGATCTATGTTTATTTTTTCT  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTACCTGCTGGAAGACCCCAAGTGAGACAAAATCTATGTTTATTTTTTCT  150

seq1  GGTGCGCAGGGATCGATCTTCAGCAGTCTCTCAAGCAAGAGACAGGGGGC  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTGCGCAGGGATCGATCTTCAGCAGTCTCTCAAGCAAGAGAAAGGGGGC  200

seq1  GATCCCGGTTCTAGCTTACAAGCACCGTATACATTTTTTTTTTTTTTTAG  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATCCCGGTTCTAGCTTACAAGCACCGTATACGTTTTTTTTTTTTTTTAG  250

seq1  AGGGCAGATTACAGTAACAGCTTCTAGGCACTTGGTGATGGATGGCTAGA  300
      |||||| |||||| |  ||| ||||| || |||||||| |||||||||||
seq2  AGGGCATATTACATTTTCAGATTCTAAGCTCTTGGTGAGGGATGGCTAGA  300

seq1  CCTTTTGTCTGGTTGGCTGGGTGATATCGGGTCATCCTTGGAGAGTACCT  350
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTTTGGCTGGTTGGCTGGGTGATATCGGGTCATCCTTGGGGAGTACCT  350

seq1  TCGTTCCCCAGAGGGCCCAGGTAGCCTTCAGCCAGCACTTTTTTTTTTTT  400
      ||||||||||||||| ||| | | ||||||||||||||||||||||||||
seq2  TCGTTCCCCAGAGGGACCAAGAAACCTTCAGCCAGCACTTTTTTTTTTTT  400

seq1  TTTTTTTTTTTTTTTTTTTCTGGTATGTGTTTTGTCAGAGTCGGTCTGGG  450
      |||||||||||||||||| | || ||| ||||||||| | ||||||||||
seq2  TTTTTTTTTTTTTTTTTTCCGGGAATGAGTTTTGTCAAAATCGGTCTGGG  450

seq1  TTGGGTCAGAGTTGCTTAATCTTATCATTTATCCACAGGTCAGCACCCCC  500
      | |||||| | ||||||||| || |||||| ||| |||||||| ||||||
seq2  TGGGGTCAAAATTGCTTAATTTTTTCATTTTTCCCCAGGTCAGAACCCCC  500

seq1  CACCCACCCCCCGCGCCACACACACACACAGAGAAACACAGAGACACACA  550
      | ||||||||||| ||||   |||||||   | |||||| ||||| | | 
seq2  CTCCCACCCCCCGGGCCATCAACACACAAGAAAAAACACTGAGACCCTCC  550

seq1  CAGAGACACATACATCACATCACAGTAAGAAAACTTCACGGGAATTAAAA  600
      | ||||| | | | |    || ||| || |||||||| ||||||||||||
seq2  CCGAGACCCTTCCTTATATTCCCAGAAAAAAAACTTCCCGGGAATTAAAA  600

seq1  TAAATTATTGTGATACCGTTTTTCTGTCCGCTAAGACTTTCCGTATGATC  650
      ||||||||||  ||||  |||||||||||| | | ||| ||| ||| |||
seq2  TAAATTATTGGAATACGCTTTTTCTGTCCGATCAAACTGTCCTTATTATC  650

seq1  AGACAGCCTTATGCCCTTTGCTACGCCCCGCCTTCCGTCATCGATTGGTG  700
        | ||||||||||||||||||||||||| |||||||  || |||||| |
seq2  TAAAAGCCTTATGCCCTTTGCTACGCCCCCCCTTCCG-AATGGATTGGGG  699

seq1  ACTTTGACTGTCACTCAG-GCCCTGTGACAGGACCGCTCTGAAATGAGGA  749
      |||||||||||||||| |  |||||||||||| || |||| |||||||||
seq2  ACTTTGACTGTCACTCCGCCCCCTGTGACAGGCCCCCTCTAAAATGAGGA  749

seq1  AGTGGGGTGGATTTAGAAAGTTCAGAG  776
      | ||||||||||||| ||| |||||||
seq2  AATGGGGTGGATTTA-AAAATTCAGAG  775