BAC Information

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BAC

Clone NameB6Ng01-138A19
Chromosome9 (Build37)
Map Location 53,112,767 - 53,267,856
singlet/doubletdoublet
Overlap geneExph5, Kdelc2, 4930550C14Rik, Atm
Upstream geneLOC100042876, AI593442, Gm1715, Ddx10
Downstream geneNpat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138A19.bB6Ng01-138A19.g
ACCDH937410DH937411
length1,0151,232
definitionDH937410|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A19, 5' end.DH937411|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,266,830 - 53,267,856)(53,112,767 - 53,114,241)
sequence
gaattctctgttctggctcgaaccttcaagaacacacaggtaaaaagctt
atatttatgttacctcacttcttgggctttttttattactcagataccag
aaggtataatgatgtgaagaagaaatatcactgaaaattggaaatcgttg
tatataaagttattgaagattttaggttgactggggcttgtacttaactt
acaatcctagtcacttgagaggttgaggtaagaggatcacaagttcagag
cctacttgcgaaagacaatgagttcatggtccccttgaaaaacctagtgg
gacctgtcttcaatgtataaaagggttgggactatggatgtatgatagca
cgcttctttgcatagctaatacaacaaggctctgggatcaaaccccagta
tcgagtgagaaaacaaaacaaagctttcatactggaattagacaaaaact
tgagtttaaacattggcaaggcaataattatcatttctcgcccccaattt
cctggttataaaataagattcccaaactactataatgtaatggtaacaat
tcagtgatctctctctctctctctctctctctctctccctctctctctct
ctctctcacacacacacacacacacacacacacacacacacacacttgtc
agactttgtggtctgcagggtgggtaagtaagcaggaaactaatttaaga
tagtcttctgaaaaatgaggttctcagtggatatcttaccagtaaatgta
tttatttccatatgcattttcactgtagctccctgaaagagcaatattca
aaattaagcaatataattcactatttgtggaatttctgagtggcatttgg
aagaacacaagtatctggcaaaaaggagcaagacttgctctgagtattct
caagcagatgatcaaaagttggactccgcttaaagataaagaggtatgtt
gtgctttgtgtcacctcggtggggcgctgcatcggaattgaatgttgtca
caaactttctgcttc
gaattcctatgttagaaattaaaggtgactgttacatgaacgcagggatg
ctctgatatggatgtcagtgctataggaatagttgaggacccaatgtagg
agaaagaactccccaagatctcttaatcatgcagggatgtctcctcatct
tcaccagtactcagcctctttgactttagtttttaggggaggatttgcat
ttaatataacaatgtttctaacatataagacgttcattcaaattctaatc
accaagattcaagttgataaataggcaaaaatcaatcgcatttgaatata
ggtaagcagtaaacgaaataaatgggggcaatgttgagtcacaataataa
tggaaaattaattttgaaatgcccagggcaggcatgttgttagtgacaag
tagatttcaaacttttcctacaagatttgtttttattattttgaactgta
tgtatacgcatatatttgtgtaggcatgtgcatgtgaccatagaaaccaa
aagagggcgtggaatactccagaggttgagttacaggtggttgtaagctg
cctgatgtgggtgctgggaaccacagttgggttctctgcaaacgcagtgt
gcattcttgactgctgagccacctttccagccaactctaaaccttacagt
gatcaagaacagaatttgaataaacctggcctttgacccagttatccatt
tctttgatagttattagtaggagccttgagtaagaggagatagctagagc
agcctttactaagtactaccttttgtaggacaatagtaattattgtccta
ataataacagctagcatttgttaggcacataccatatactgatcattgta
ctaaacatgctgtgcagagttcatgcatctaggcaccctttttagtttcc
atttcacagagaagtaaactacttataaacgttgagtatcttggtaagta
gtagaatcagaagtaaatctaagtctatcttaaaattattttgcctgtca
acattgagtattagtcacagccattccttgggtcaagtattatgacattt
acaatgtcaaggaacttgtctcaggatactataggtccacaaaatacaat
ctaaattgtgagccatagatcattccagcctacaccttttctttcaattc
gaaggttacatacaacagatctttttctatctgctaactatactctctac
taccttctgcttcgtatcatccttctgatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53266830_53267856
seq2: B6Ng01-138A19.b_46_1060 (reverse)

seq1  GAAGCAGAAATGCTTTCTGACAACATTCAATCACGGATGCAGCCACCCCA  50
      ||||||||||   ||| ||||||||||||||  | ||||||| | |||||
seq2  GAAGCAGAAA--GTTTGTGACAACATTCAAT-TCCGATGCAG-CGCCCCA  46

seq1  CCGACGTGCACACAAAGCACATACATACCTCTTTATCTTTAAAGCTGGAG  100
      |||| ||| |||||||||||| |||||||||||||||||| |||| ||||
seq2  CCGAGGTG-ACACAAAGCACA-ACATACCTCTTTATCTTT-AAGC-GGAG  92

seq1  TCCAACTTCTTGATCATCTGCTTGAGAATACTCAGAGCAAGACTCTGCTC  150
      |||||||| |||||||||||||||||||||||||||||||| || |||||
seq2  TCCAACTT-TTGATCATCTGCTTGAGAATACTCAGAGCAAGTCT-TGCTC  140

seq1  CTTTTTTGCCCAGAATACTTGTGCTTCTTCCAAATGCCACTCAGAAATTC  200
      ||||||   |||| ||||||||| ||||||||||||||||||||||||||
seq2  CTTTTT--GCCAG-ATACTTGTG-TTCTTCCAAATGCCACTCAGAAATTC  186

seq1  CACAAATAGCTGAATTATATTGCTTAATTTTGAATATTGCTCTTTCAGGG  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAG-TGAATTATATTGCTTAATTTTGAATATTGCTCTTTCAGGG  235

seq1  AGCTACAGTGAAAATGCATATGGAAATAAATACATTTACTGGTAAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGTGAAAATGCATATGGAAATAAATACATTTACTGGTAAGATAT  285

seq1  CCACTGAGAACCTCATTTTTCAG-AGACTATCTT-AATTAGTTTCCTGCT  348
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  CCACTGAGAACCTCATTTTTCAGAAGACTATCTTAAATTAGTTTCCTGCT  335

seq1  TACTTA-CCAACCTGCAGACCACAAAGTCTGACAAGTGTGTGTGTGTGTG  397
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  TACTTACCCACCCTGCAGACCACAAAGTCTGACAAGTGTGTGTGTGTGTG  385

seq1  TGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGGGAGAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGGGAGAGAG  435

seq1  AGAGAGAGAGAGAGAGAGAGAGATCACTGAATTGTTACCATTACATTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGATCACTGAATTGTTACCATTACATTATA  485

seq1  GTAGTTTGGGAATCTTATTTTATAACCAGGAAATTGGGGGCGAGAAATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGGGAATCTTATTTTATAACCAGGAAATTGGGGGCGAGAAATGA  535

seq1  TAATTATTGCCTTGCCAATGTTTAAACTCAAGTTTTTGTCTAATTCCAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTGCCTTGCCAATGTTTAAACTCAAGTTTTTGTCTAATTCCAGT  585

seq1  ATGAAAGCTTTGTTTTGTTTTCTCACTCGATACTGGGGTTTGATCCCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCTTTGTTTTGTTTTCTCACTCGATACTGGGGTTTGATCCCAGA  635

seq1  GCCTTGTTGTATTAGCTATGCAAAGAAGCGTGCTATCATACATCCATAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGTATTAGCTATGCAAAGAAGCGTGCTATCATACATCCATAGT  685

seq1  CCCAACCCTTTTATACATTGAAGACAGGTCCCACTAGGTTTTTCAAGGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCTTTTATACATTGAAGACAGGTCCCACTAGGTTTTTCAAGGGG  735

seq1  ACCATGAACTCATTGTCTTTCGCAAGTAGGCTCTGAACTTGTGATCCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAACTCATTGTCTTTCGCAAGTAGGCTCTGAACTTGTGATCCTCT  785

seq1  TACCTCAACCTCTCAAGTGACTAGGATTGTAAGTTAAGTACAAGCCCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAACCTCTCAAGTGACTAGGATTGTAAGTTAAGTACAAGCCCCAG  835

seq1  TCAACCTAAAATCTTCAATAACTTTATATACAACGATTTCCAATTTTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTAAAATCTTCAATAACTTTATATACAACGATTTCCAATTTTCAG  885

seq1  TGATATTTCTTCTTCACATCATTATACCTTCTGGTATCTGAGTAATAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTCTTCTTCACATCATTATACCTTCTGGTATCTGAGTAATAAAA  935

seq1  AAAGCCCAAGAAGTGAGGTAACATAAATATAAGCTTTTTACCTGTGTGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAAGAAGTGAGGTAACATAAATATAAGCTTTTTACCTGTGTGTT  985

seq1  CTTGAAGGTTCGAGCCAGAACAGAGAATTC  1027
      ||||||||||||||||||||||||||||||
seq2  CTTGAAGGTTCGAGCCAGAACAGAGAATTC  1015

seq1: chr9_53112767_53114241
seq2: B6Ng01-138A19.g_67_1298

seq1  GAATTCCTATGTTAGAAATTAAAGGTGACTGTTACATGAACGCAGGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTTAGAAATTAAAGGTGACTGTTACATGAACGCAGGGATG  50

seq1  CTCTGATATGGATGTCAGTGCTATAGGAATAGTTGAGGACCCAATGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATATGGATGTCAGTGCTATAGGAATAGTTGAGGACCCAATGTAGG  100

seq1  AGAAAGAACTCCCCAAGATCTCTTAATCATGCAGGGATGTCTCCTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACTCCCCAAGATCTCTTAATCATGCAGGGATGTCTCCTCATCT  150

seq1  TCACCAGTACTCAGCCTCTTTGACTTTAGTTTTTAGGGGAGGATTTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTACTCAGCCTCTTTGACTTTAGTTTTTAGGGGAGGATTTGCAT  200

seq1  TTAATATAACAATGTTTCTAACATATAAGACGTTCATTCAAATTCTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATAACAATGTTTCTAACATATAAGACGTTCATTCAAATTCTAATC  250

seq1  ACCAAGATTCAAGTTGATAAATAGGCAAAAATCAATCGCATTTGAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATTCAAGTTGATAAATAGGCAAAAATCAATCGCATTTGAATATA  300

seq1  GGTAAGCAGTAAACGAAATAAATGGGGGCAATGTTGAGTCACAATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCAGTAAACGAAATAAATGGGGGCAATGTTGAGTCACAATAATAA  350

seq1  TGGAAAATTAATTTTGAAATGCCCAGGGCAGGCATGTTGTTAGTGACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTAATTTTGAAATGCCCAGGGCAGGCATGTTGTTAGTGACAAG  400

seq1  TAGATTTCAAACTTTTCCTACAAGATTTGTTTTTATTATTTTGAACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCAAACTTTTCCTACAAGATTTGTTTTTATTATTTTGAACTGTA  450

seq1  TGTATACGCATATATTTGTGTAGGCATGTGCATGTGACCATAGAAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACGCATATATTTGTGTAGGCATGTGCATGTGACCATAGAAACCAA  500

seq1  AAGAGGGCGTGGAATACTCCAGAGGTTGAGTTACAGGTGGTTGTAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCGTGGAATACTCCAGAGGTTGAGTTACAGGTGGTTGTAAGCTG  550

seq1  CCTGATGTGGGTGCTGGGAACCACAGTTGGGTTCTCTGCAAACGCAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTGGGTGCTGGGAACCACAGTTGGGTTCTCTGCAAACGCAGTGT  600

seq1  GCATTCTTGACTGCTGAGCCACCTTTCCAGCCAACTCTAAACCTTACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTGACTGCTGAGCCACCTTTCCAGCCAACTCTAAACCTTACAGT  650

seq1  GATCAAGAACAGAATTTGAATAAACCTGGCCTTTGACCCAGTTATCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGAACAGAATTTGAATAAACCTGGCCTTTGACCCAGTTATCCATT  700

seq1  TCTTTGATAGTTATTAGTAGGAGCCTTGAGTAAGAGGAGATAGCTAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATAGTTATTAGTAGGAGCCTTGAGTAAGAGGAGATAGCTAGAGC  750

seq1  AGCCTTTACTAAGTACTACCTTTTGTAGGACAATAGTAATTATTGTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTACTAAGTACTACCTTTTGTAGGACAATAGTAATTATTGTCCTA  800

seq1  ATAATAACAGCTAGCATTTGTTAGGCACATACCATATACTGATCATTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACAGCTAGCATTTGTTAGGCACATACCATATACTGATCATTGTA  850

seq1  CTAAACATGCTGTGCAGAGTTCATGCATCTAGGCACCCTTTTTAGTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATGCTGTGCAGAGTTCATGCATCTAGGCACCCTTTTTAGTTTCC  900

seq1  ATTTCACAGAGAAGTAAACTACTTATAAACGTTGAGTATCTTGGTAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAGAGAAGTAAACTACTTATAAACGTTGAGTATCTTGGTAAGTA  950

seq1  GTAGAATCAGAAGTTAAATCTAAGTCTATCTTAAAATTATTTTGCCTGTC  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCAGAAG-TAAATCTAAGTCTATCTTAAAATTATTTTGCCTGTC  999

seq1  AACATTGAGTAATAGTCACAGCCATTCCTTGGGTCAAGTATTATGACATT  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAGTATTAGTCACAGCCATTCCTTGGGTCAAGTATTATGACATT  1049

seq1  TAACAATGTCAAGGAACTTG-CCCAGGATACTATA-GTCCACAAAATACA  1098
      | |||||||||||||||||| | |||||||||||| ||||||||||||| 
seq2  T-ACAATGTCAAGGAACTTGTCTCAGGATACTATAGGTCCACAAAATAC-  1097

seq1  AATCTAAAATGTGAGCCAT-GATCAATCCAGCTCTAAACAACTTTTATCT  1147
      |||||||| |||||||||| ||||| |||||| ||  ||| ||||  |||
seq2  AATCTAAATTGTGAGCCATAGATCATTCCAGC-CT--ACACCTTT--TCT  1142

seq1  TTCCCATATCGAATGTATACATACATACATATCTATCTATCTATCTATCT  1197
      ||  ||  ||||| || |||||||| ||| |||  | | |||||||  ||
seq2  TT--CAATTCGAAGGT-TACATACA-ACAGATC--TTTTTCTATCT-GCT  1185

seq1  ATCTAT-CTATCTATCTATCTATCTATCTATCTATCTATCTATCTG-TTT  1245
      | |||| || |||| ||| || |||  ||   |||| |||  |||| |||
seq2  AACTATACTCTCTA-CTACCT-TCT-GCTTCGTATC-ATCCTTCTGATTT  1231

seq1  ACATATGTGTGGACTTTTATGTATTTGTTTTTATTTTCATCCTAAATCTG  1295
                                                        
seq2  C-------------------------------------------------  1232

seq1  ACCAACAGAAATTTTTGTTTTTCTTTCTTAAAAGCTAGCAGTAGGGGCTG  1345
                                                        
seq2  --------------------------------------------------  1232

seq1  GAGAGTTGGCTCAGTAATGAGCAATGACTTTTCCTGTGGAAGATCTGGGT  1395
                                                        
seq2  --------------------------------------------------  1232

seq1  TCAATTCCCTGCATCCCCCTGGTGGCTCACAAACATCTGTTACTCCAGTT  1445
                                                        
seq2  --------------------------------------------------  1232

seq1  TCAGGGTAGCTGACACCTCCTTCTGATTTC  1475
                                    
seq2  ------------------------------  1232