BAC Information

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BAC

Clone NameB6Ng01-138M02
Chromosome9 (Build37)
Map Location 73,993,001 - 74,140,156
singlet/doubletdoublet
Overlap genenone
Upstream geneEG436081, Unc13c, Wdr72
Downstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138M02.bB6Ng01-138M02.g
ACCDH937924DH937925
length1,0581,079
definitionDH937924|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M02, 5' end.DH937925|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,993,001 - 73,994,066)(74,139,071 - 74,140,156)
sequence
gaattcaaggtaacggtgggcaccttggcgtctaagatggtgcagcggcc
ggtgagatactactgaaactgtcaagcaagagttgagatcactgttagtg
ttctccttgtcctggggcagctcttaaaaccatggcagggggaaacccag
atctcctccaccagtgggtcaaggtattaggaagccagcaggaggtggag
acatgcaaaagagaatctgtttctatgatccagttctcagttctgcttgc
tgagagggacaggcagttgggctgtttgtgtgttctctctctggctttcc
ttcctcttcccctggtcttccccttcttttcttttgtctgtctctctgtc
tgtctctgtctctgtctctctgtctctctctctctctctctgtgtgtgtg
tgtgtgtgtaggtgtggggcactttttctggatataccactgaaactctg
tttctgtagttggtaatgcccaagtaaaatgtgaattgcttctacattcc
cacctataacaggttcagcacaaccattgcctgacaggcgccatggctct
tcttttagctgtattctgcacacacatagggtagaacctggaatggaatc
attcccttaacaaaaatcaaagctgagtatatcccgctgactcagtcctg
tgcagtctttgagtaactatgaggtaatactgaaaacatgcaggtccacc
ggctcacagctcatatgtgacctcccttcttttcacagaagattctctct
tggttgtgtccataaccggcgaactcaaagtatgggacctctcctcgtcc
atcaacagcattcagttgccttggaaaccactcttttttattattattat
tatttcaatcactattcattgaaaatttcaaaccatgagagttgatgcat
gttcacagttgaaggtttaaatgatatctttccagggtgggcaccgaggc
atctgaattgcatccttcaaccgtgactccaaacataatctaataagatt
tattacacaaacaggggaggagtagggaggaggaaaatttattttttact
caaaatga
gaattccctcagtctcctccttatggttcttgaacatattaataattgct
gattaaagtttttttcttgttcttcagctgagttgcgttcctcatagaat
attataaatggggttcttggtttctggagaaagcatattgtctcagttgt
tcatgtttgtgtttgtgtgatgggttggagctgtaattctgtgatgttct
tgtgaggctatctcatcttacctttgttaggtcaggagattgggtcttta
tttgctgctactccaacctgtcagattgtgtatcagctgactgatatgtg
gtgtttagtattgggaacttctgggttttgaagttcaggctctactggtc
ccagattggtgcaatgatgtgcttaatattctgattggaactcttagctc
aaactccaggcagtcctgaatctgcgcaaggaggatggatggtaggtgac
ctggcaaaggaagggcactgactctggcgtctcttaagtagagtaatttt
tgttagtaatagtcactttgtaattactgctatatggtcagaactgggcc
acacaatacactgattgtgtttgttctctaggttttcatttgcttattgt
cctgtcacttcgtctgccaactcttcttactgctatgacctaaaatgcag
caagaaaccatttaaagcagggagggtttcttctgtcttagagaatgggg
gagggaatcatttcaccatggtgggcactatacagaagctggtggaaggg
aacagcagacaaggcaggaggcagctgatcctgttacacttccaaacggc
aagcagagactaggcaggacagtggatggactacaaagcctcaaggctct
ctccaaagatgtacttcctccaacaaggcttcactttttagagttttcac
accttcctaaacagctctcccagcccagaccaagtgttcaagcatacaaa
ccttatgaagactatcgagctcaaccacaacccatagctgacaaggatca
tcaccactccatcacagaatgtttctgaatcatcccagccttaacaggta
gcttaataaccttctccttcatccaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73993001_73994066
seq2: B6Ng01-138M02.b_47_1104

seq1  GAATTCAAGGTAACGGTGGGCACCTTGGCGTCTAAGATGGTGCAGCGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTAACGGTGGGCACCTTGGCGTCTAAGATGGTGCAGCGGCC  50

seq1  GGTGAGATACTACTGAAACTGTCAAGCAAGAGTTGAGATCACTGTTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATACTACTGAAACTGTCAAGCAAGAGTTGAGATCACTGTTAGTG  100

seq1  TTCTCCTTGTCCTGGGGCAGCTCTTAAAACCATGGCAGGGGGAAACCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGTCCTGGGGCAGCTCTTAAAACCATGGCAGGGGGAAACCCAG  150

seq1  ATCTCCTCCACCAGTGGGTCAAGGTATTAGGAAGCCAGCAGGAGGTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCCACCAGTGGGTCAAGGTATTAGGAAGCCAGCAGGAGGTGGAG  200

seq1  ACATGCAAAAGAGAATCTGTTTCTATGATCCAGTTCTCAGTTCTGCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAAAGAGAATCTGTTTCTATGATCCAGTTCTCAGTTCTGCTTGC  250

seq1  TGAGAGGGACAGGCAGTTGGGCTGTTTGTGTGTTCTCTCTCTGGCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGACAGGCAGTTGGGCTGTTTGTGTGTTCTCTCTCTGGCTTTCC  300

seq1  TTCCTCTTCCCCTGGTCTTCCCCTTCTTTTCTTTTGTCTGTCTCTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCCCCTGGTCTTCCCCTTCTTTTCTTTTGTCTGTCTCTCTGTC  350

seq1  TGTCTCTGTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCTGTGTGTGTG  400

seq1  TGTGTGTGTAGGTGTGGGGCACTTTTTCTGGATATACCACTGAAACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAGGTGTGGGGCACTTTTTCTGGATATACCACTGAAACTCTG  450

seq1  TTTCTGTAGTTGGTAATGCCCAAGTAAAATGTGAATTGCTTCTACATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGTTGGTAATGCCCAAGTAAAATGTGAATTGCTTCTACATTCC  500

seq1  CACCTATAACAGGTTCAGCACAACCATTGCCTGACAGGCGCCATGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATAACAGGTTCAGCACAACCATTGCCTGACAGGCGCCATGGCTCT  550

seq1  TCTTTTAGCTGTATTCTGCACACACATAGGGTAGAACCTGGAATGGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGCTGTATTCTGCACACACATAGGGTAGAACCTGGAATGGAATC  600

seq1  ATTCCCTTAACAAAAATCAAAGCTGAGTATATCCCGCTGACTCAGTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTAACAAAAATCAAAGCTGAGTATATCCCGCTGACTCAGTCCTG  650

seq1  TGCAGTCTTTGAGTAACTATGAGGTAATACTGAAAACATGCAGGTCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTTTGAGTAACTATGAGGTAATACTGAAAACATGCAGGTCCACC  700

seq1  GGCTCACAGCTCATATGTGACCTCCCTTCTTTTCACAGAAGATTCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAGCTCATATGTGACCTCCCTTCTTTTCACAGAAGATTCTCTCT  750

seq1  TGGTTGTGTCCATAACCGGCGAACTCAAAGTATGGGACCTCTCCTCGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGTCCATAACCGGCGAACTCAAAGTATGGGACCTCTCCTCGTCC  800

seq1  ATCAACAGCATTCAGGTTGCCTTGGAAACCACTCTTTTTTATTATTATTA  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCAACAGCATTCA-GTTGCCTTGGAAACCACTCTTTTTTATTATTATTA  849

seq1  TTATTTCAATCACTATTCATTGAAAATTTCAAACCATGAGAGTTGATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAATCACTATTCATTGAAAATTTCAAACCATGAGAGTTGATGCA  899

seq1  TGTTCACAGTTGAAGGTTTAAATGATATCTTTCCAGGGGTGGGCACCGAG  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTCACAGTTGAAGGTTTAAATGATATCTTTCCA-GGGTGGGCACCGAG  948

seq1  GCATCTGAATTGCATCCTTCCAACCGTGACTCCATACATAATCTAAATAG  1000
      ||||||||||||||||||| |||||||||||||| |||||||||||  ||
seq2  GCATCTGAATTGCATCCTT-CAACCGTGACTCCAAACATAATCTAATAAG  997

seq1  ATTTATTTACACACACAGGGGAGGAGTAGGGA-GAGGAAAAGATTATATT  1049
      ||||| ||||||| |||||||||||||||||| ||||||||   | ||||
seq2  ATTTA-TTACACAAACAGGGGAGGAGTAGGGAGGAGGAAAA---TTTATT  1043

seq1  TTTAATTTAAAAAATGA  1066
      ||| | |   |||||||
seq2  TTTTACT--CAAAATGA  1058

seq1: chr9_74139071_74140156
seq2: B6Ng01-138M02.g_68_1146 (reverse)

seq1  CTTTTGGATGAAGAAGAA-GCTACTAAGCTACCTGGTAAAGCTGGGATGA  49
      ||||||||||||| |||| | || ||||||||||| ||| ||||||||||
seq2  CTTTTGGATGAAGGAGAAGGTTATTAAGCTACCTGTTAAGGCTGGGATGA  50

seq1  TTTCAG-AACA-TCTGTGGATGGAGTTGGTGATGAATCCTTGTCAGCTAT  97
       ||||| |||| ||||| ||||||| |||||||| |||||||||||||||
seq2  -TTCAGAAACATTCTGT-GATGGAG-TGGTGATG-ATCCTTGTCAGCTAT  96

seq1  TGGTGTTGTGGTTTGAGCTCGATATGTCTTCCATAGGTTTGTATGCTTGA  147
        | ||||||| |||||||||||| ||||||   ||||||||||||||||
seq2  --GGGTTGTGG-TTGAGCTCGATA-GTCTTCATAAGGTTTGTATGCTTGA  142

seq1  ACACTTGGTCCTGGGCTGGGAGAGCTGTTTAGGAAGGTTGTGAAAACTCT  197
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  ACACTTGGT-CTGGGCTGGGAGAGCTGTTTAGGAAGG-TGTGAAAACTCT  190

seq1  AAAAAGTGAAGCCTTGTTGGAGGAAGTACATCTTTGGAGAGAGCCTTGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAAGCCTTGTTGGAGGAAGTACATCTTTGGAGAGAGCCTTGAG  240

seq1  GCTTTGTAGTCCATCCACTGTCCTGCCTAGTCTCTGCTTGCCGTTTGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAGTCCATCCACTGTCCTGCCTAGTCTCTGCTTGCCGTTTGGAA  290

seq1  GTGTAACAGGATCAGCTGCCTCCTGCCTTGTCTGCTGTTCCCTTCCACCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACAGGATCAGCTGCCTCCTGCCTTGTCTGCTGTTCCCTTCCACCA  340

seq1  GCTTCTGTATAGTGCCCACCATGGTGAAATGATTCCCTCCCCCATTCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTATAGTGCCCACCATGGTGAAATGATTCCCTCCCCCATTCTCT  390

seq1  AAGACAGAAGAAACCCTCCCTGCTTTAAATGGTTTCTTGCTGCATTTTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAGAAACCCTCCCTGCTTTAAATGGTTTCTTGCTGCATTTTAG  440

seq1  GTCATAGCAGTAAGAAGAGTTGGCAGACGAAGTGACAGGACAATAAGCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGCAGTAAGAAGAGTTGGCAGACGAAGTGACAGGACAATAAGCAA  490

seq1  ATGAAAACCTAGAGAACAAACACAATCAGTGTATTGTGTGGCCCAGTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACCTAGAGAACAAACACAATCAGTGTATTGTGTGGCCCAGTTCT  540

seq1  GACCATATAGCAGTAATTACAAAGTGACTATTACTAACAAAAATTACTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATATAGCAGTAATTACAAAGTGACTATTACTAACAAAAATTACTCT  590

seq1  ACTTAAGAGACGCCAGAGTCAGTGCCCTTCCTTTGCCAGGTCACCTACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAGACGCCAGAGTCAGTGCCCTTCCTTTGCCAGGTCACCTACCA  640

seq1  TCCATCCTCCTTGCGCAGATTCAGGACTGCCTGGAGTTTGAGCTAAGAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTCCTTGCGCAGATTCAGGACTGCCTGGAGTTTGAGCTAAGAGT  690

seq1  TCCAATCAGAATATTAAGCACATCATTGCACCAATCTGGGACCAGTAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCAGAATATTAAGCACATCATTGCACCAATCTGGGACCAGTAGAG  740

seq1  CCTGAACTTCAAAACCCAGAAGTTCCCAATACTAAACACCACATATCAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTTCAAAACCCAGAAGTTCCCAATACTAAACACCACATATCAGT  790

seq1  CAGCTGATACACAATCTGACAGGTTGGAGTAGCAGCAAATAAAGACCCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATACACAATCTGACAGGTTGGAGTAGCAGCAAATAAAGACCCAA  840

seq1  TCTCCTGACCTAACAAAGGTAAGATGAGATAGCCTCACAAGAACATCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGACCTAACAAAGGTAAGATGAGATAGCCTCACAAGAACATCACA  890

seq1  GAATTACAGCTCCAACCCATCACACAAACACAAACATGAACAACTGAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGCTCCAACCCATCACACAAACACAAACATGAACAACTGAGAC  940

seq1  AATATGCTTTCTCCAGAAACCAAGAACCCCATTTATAATATTCTATGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTTTCTCCAGAAACCAAGAACCCCATTTATAATATTCTATGAGG  990

seq1  AACGCAACTCAGCTGAAGAACAAGAAAAAAACTTTAATCAGCAATTATTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAACTCAGCTGAAGAACAAGAAAAAAACTTTAATCAGCAATTATTA  1040

seq1  ATATGTTCAAGAACCATAAGGAGGAGACTGAGGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCAAGAACCATAAGGAGGAGACTGAGGGAATTC  1079