BAC Information

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BAC

Clone NameB6Ng01-139E24
Chromosome9 (Build37)
Map Location 8,841,685 - 9,032,017
singlet/doubletdoublet
Overlap genePgr, 9030420J04Rik
Upstream geneBirc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139E24.bB6Ng01-139E24.g
ACCDH938330DH938331
length1,076171
definitionDH938330|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E24, 5' end.DH938331|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,030,940 - 9,032,017)(8,841,685 - 8,841,855)
sequence
gaattcactttgtagactaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccgagtgctggaattaaaggcgtgtgccaccacgcccggcta
ttccagctttttaatcatttcatataagtagtgaaagttcccagtgtttt
gcaggggaattatgggtttatatcaattcttgtacatgagctaatctata
agttttatatcaccctcaactcccctttatttggtgccttcttttatctg
gaaatatatccttaagtaatttttcacagtgactgcatggaagaaatttg
gggacattgtcgagacaggatcttattttgtagtccaagtctggactcag
actcattgtgtaagccatgctggccttgggcttgtgattctctggtctca
gcctaccagtgcagacatacacagcatgcctggcgtgagaattattttgg
ggacttcattttaatactgtgatcacggtgcagaaaaacgctatggacca
ttggctagttgtgagctaagtcattgttagtgactgactggtcccatgtc
aggctcatgagcttaatcactctctgttgaatagcaggtgactgagtaac
agtggatatgcatttgccatctttttgaccttttcgggggaaactttgaa
ttaattccttcagataaccctgtactcaatacattcatgacttatctgtc
atcatttaaatttaaaaagtgtgtgcgcatgtgtgtgcttgtaagtgtgt
atatgtgtgtctgtctatgggtgtccacatgtgtagatgtgtatgagtat
ctgggtttccacgtatgtatgtgagcagtatgtgtttgagagtatatgtg
tgtatgcatgcgtgtgagtgcacgtatgggtgtgagtgtcatgtgtgtca
tgtgtgagtgtctgtcatgtgtgagtgacatgtgtgagtgtcatgcatga
cttttcctggaaaggactgtaaaacaaaccttcaggttttcttttttcat
tttcttcttctttctattctttctttcaaatgtggacctttgatgtaaat
aatccagggacatgaaaaataacaaa

tatgaacattgtagagacaaccactgactaccaaagcaatccagtgagca
tagaaagggaaggaaggaaagatggaaggggaaaaggaagagatggagaa
cgggaggaaggaaggaaggaaggaaggaaggaaggaatgaaggactgaag
gaaggaaggaaggaaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9030940_9032017
seq2: B6Ng01-139E24.b_46_1121 (reverse)

seq1  TTTGTTAATTTTCATGT-CCTTGATTAATTAATTATAAAGTCATAATTTG  49
      ||||||| ||||||||| ||| ||||| |||  |  || |||   |||| 
seq2  TTTGTTATTTTTCATGTCCCTGGATTATTTACATCAAAGGTCCACATTT-  49

seq1  GAAAGAAAAGATTAGAAGAATGAAGAAAATGGAAAAAGAAAACTTGAAGG  99
      ||||| ||||| |||||  | |||||||||| ||||||||||| ||||||
seq2  GAAAG-AAAGAATAGAAAGAAGAAGAAAATGAAAAAAGAAAACCTGAAGG  98

seq1  TTTGTTTTACAGCCCTTTTCAGGAAAAGTCATGCATGACACTCACACATG  149
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTTGTTTTACAGTCCTTTCCAGGAAAAGTCATGCATGACACTCACACATG  148

seq1  TCACTCACACATGACAGACACTCACACATGACACACATGACACTCACACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACACATGACAGACACTCACACATGACACACATGACACTCACACC  198

seq1  CATACGTGCACTCACACGCATGCATACACACATATACTCTCAAACACATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGTGCACTCACACGCATGCATACACACATATACTCTCAAACACATA  248

seq1  CCTGCTCACATACATACGTGGAAACCCAGATACTCATACACATCTACACA  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGCTCACATACATACGTGGAAACCCAGATACTCATACACATCTACACA  297

seq1  TGTGGACACCCATAGACAGACACACATATACACACTTACAAGCACACACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACACCCATAGACAGACACACATATACACACTTACAAGCACACACA  347

seq1  TGCGCACACACTTTTTAAATTTAAATGATGACAGATAAGTCATGAATGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACACACTTTTTAAATTTAAATGATGACAGATAAGTCATGAATGTA  397

seq1  TTGAGTACAGGGTTATCTGAAGGAATTAATTCAAAGTTTCCCCCGAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTACAGGGTTATCTGAAGGAATTAATTCAAAGTTTCCCCCGAAAAG  447

seq1  GTCAAAAAGATGGCAAATGCATATCCACTGTTACTCAGTCACCTGCTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAAGATGGCAAATGCATATCCACTGTTACTCAGTCACCTGCTATT  497

seq1  CAACAGAGAGTGATTAAGCTCATGAGCCTGACATGGGACCAGTCAGTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGAGTGATTAAGCTCATGAGCCTGACATGGGACCAGTCAGTCAC  547

seq1  TAACAATGACTTAGCTCACAACTAGCCAATGGTCCATAGCGTTTTTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGACTTAGCTCACAACTAGCCAATGGTCCATAGCGTTTTTCTGC  597

seq1  ACCGTGATCACAGTATTAAAATGAAGTCCCCAAAATAATTCTCACGCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGATCACAGTATTAAAATGAAGTCCCCAAAATAATTCTCACGCCAG  647

seq1  GCATGCTGTGTATGTCTGCACTGGTAGGCTGAGACCAGAGAATCACAAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGTGTATGTCTGCACTGGTAGGCTGAGACCAGAGAATCACAAGC  697

seq1  CCAAGGCCAGCATGGCTTACACAATGAGTCTGAGTCCAGACTTGGACTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCAGCATGGCTTACACAATGAGTCTGAGTCCAGACTTGGACTAC  747

seq1  AAAATAAGATCCTGTCTCGACAATGTCCCCAAATTTCTTCCATGCAGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGATCCTGTCTCGACAATGTCCCCAAATTTCTTCCATGCAGTCA  797

seq1  CTGTGAAAAATTACTTAAGGATATATTTCCAGATAAAAGAAGGCACCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAAATTACTTAAGGATATATTTCCAGATAAAAGAAGGCACCAAA  847

seq1  TAAAGGGGAGTTGAGGGTGATATAAAACTTATAGATTAGCTCATGTACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGAGTTGAGGGTGATATAAAACTTATAGATTAGCTCATGTACAA  897

seq1  GAATTGATATAAACCCATAATTCCCCTGCAAAACACTGGGAACTTTCACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATATAAACCCATAATTCCCCTGCAAAACACTGGGAACTTTCACT  947

seq1  ACTTATATGAAATGATTAAAAAGCTGGAATAGCCGGGCGTGGTGGCACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATGAAATGATTAAAAAGCTGGAATAGCCGGGCGTGGTGGCACAC  997

seq1  GCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  1047

seq1  GAGGCCAGCCTAGTCTACAAAGTGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTAGTCTACAAAGTGAATTC  1076


seq1: chr9_8841685_8841855
seq2: B6Ng01-139E24.g_73_243

seq1  TATGAACATTGTAGAGACAACCACTGACTACCAAAGCAATCCAGTGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACATTGTAGAGACAACCACTGACTACCAAAGCAATCCAGTGAGCA  50

seq1  TAGAAAGGGAAGGAAGGAAAGATGGAAGGGGAAAAGGAAGAGATGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGGAAGGAAGGAAAGATGGAAGGGGAAAAGGAAGAGATGGAGAA  100

seq1  CGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  150
      ||||||||||||||||||||||||||||||||||||| ||||||  ||||
seq2  CGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATGAAGGACTGAAG  150

seq1  GAAGGAAGGAAGGAAGGAAGA  171
      |||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGA  171


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